Invoking:
  getsize ../meme_out/tye7_nit_idr/tye7.nit.idr.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.080466
Invoking:
  fasta-most -min 50 < ../meme_out/tye7_nit_idr/tye7.nit.idr.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.102236
Invoking:
  fasta-center -dna -len 100 < ../meme_out/tye7_nit_idr/tye7.nit.idr.fa 1> ../meme_out/tye7_nit_idr/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.151665
Invoking:
  fasta-shuffle-letters ../meme_out/tye7_nit_idr/seqs-centered ../meme_out/tye7_nit_idr/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.057125
Invoking:
  fasta-subsample ../meme_out/tye7_nit_idr/seqs-centered 600 -rest ../meme_out/tye7_nit_idr/seqs-discarded -seed 1 1> ../meme_out/tye7_nit_idr/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.133912
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 ../meme_out/tye7_nit_idr/tye7.nit.idr.fa ../meme_out/tye7_nit_idr/background
Finished invoke:
  name: bg  status: 0  time: 0.031311
Invoking:
  meme ../meme_out/tye7_nit_idr/seqs-sampled -oc ../meme_out/tye7_nit_idr/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile ../meme_out/tye7_nit_idr/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 824.416274
Invoking:
  dreme -v 1 -oc ../meme_out/tye7_nit_idr/dreme_out -png -dna -p ../meme_out/tye7_nit_idr/seqs-centered -n ../meme_out/tye7_nit_idr/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 97.059094
Invoking:
  centrimo -seqlen 150 -verbosity 1 -oc ../meme_out/tye7_nit_idr/centrimo_out -bfile ../meme_out/tye7_nit_idr/background ../meme_out/tye7_nit_idr/tye7.nit.idr.fa ../meme_out/tye7_nit_idr/meme_out/meme.xml ../meme_out/tye7_nit_idr/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.203073
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 ../meme_out/tye7_nit_idr/combined.meme ../meme_out/tye7_nit_idr/combined.meme 1> ../meme_out/tye7_nit_idr/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.054523
Invoking:
  spamo -verbosity 1 -oc ../meme_out/tye7_nit_idr/spamo_out_1 -bgfile ../meme_out/tye7_nit_idr/background -primary GADGAMGA ../meme_out/tye7_nit_idr/tye7.nit.idr.fa ../meme_out/tye7_nit_idr/dreme_out/dreme.xml ../meme_out/tye7_nit_idr/meme_out/meme.xml ../meme_out/tye7_nit_idr/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.435712
Invoking:
  spamo -verbosity 1 -oc ../meme_out/tye7_nit_idr/spamo_out_2 -bgfile ../meme_out/tye7_nit_idr/background -primary CSAAG ../meme_out/tye7_nit_idr/tye7.nit.idr.fa ../meme_out/tye7_nit_idr/dreme_out/dreme.xml ../meme_out/tye7_nit_idr/meme_out/meme.xml ../meme_out/tye7_nit_idr/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.671064
Invoking:
  spamo -verbosity 1 -oc ../meme_out/tye7_nit_idr/spamo_out_3 -bgfile ../meme_out/tye7_nit_idr/background -primary HGGTA ../meme_out/tye7_nit_idr/tye7.nit.idr.fa ../meme_out/tye7_nit_idr/dreme_out/dreme.xml ../meme_out/tye7_nit_idr/meme_out/meme.xml ../meme_out/tye7_nit_idr/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.657073
Invoking:
  spamo -verbosity 1 -oc ../meme_out/tye7_nit_idr/spamo_out_4 -bgfile ../meme_out/tye7_nit_idr/background -primary ATATH ../meme_out/tye7_nit_idr/tye7.nit.idr.fa ../meme_out/tye7_nit_idr/dreme_out/dreme.xml ../meme_out/tye7_nit_idr/meme_out/meme.xml ../meme_out/tye7_nit_idr/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.704881
Invoking:
  spamo -verbosity 1 -oc ../meme_out/tye7_nit_idr/spamo_out_5 -bgfile ../meme_out/tye7_nit_idr/background -primary TGGCMA ../meme_out/tye7_nit_idr/tye7.nit.idr.fa ../meme_out/tye7_nit_idr/dreme_out/dreme.xml ../meme_out/tye7_nit_idr/meme_out/meme.xml ../meme_out/tye7_nit_idr/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.410027
Invoking:
  spamo -verbosity 1 -oc ../meme_out/tye7_nit_idr/spamo_out_6 -bgfile ../meme_out/tye7_nit_idr/background -primary ASTAC ../meme_out/tye7_nit_idr/tye7.nit.idr.fa ../meme_out/tye7_nit_idr/dreme_out/dreme.xml ../meme_out/tye7_nit_idr/meme_out/meme.xml ../meme_out/tye7_nit_idr/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.652028
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc ../meme_out/tye7_nit_idr/fimo_out_1 --bgfile ../meme_out/tye7_nit_idr/background --motif GADGAMGA ../meme_out/tye7_nit_idr/dreme_out/dreme.xml ../meme_out/tye7_nit_idr/tye7.nit.idr.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.456882
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc ../meme_out/tye7_nit_idr/fimo_out_2 --bgfile ../meme_out/tye7_nit_idr/background --motif CSAAG ../meme_out/tye7_nit_idr/dreme_out/dreme.xml ../meme_out/tye7_nit_idr/tye7.nit.idr.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.244006
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc ../meme_out/tye7_nit_idr/fimo_out_3 --bgfile ../meme_out/tye7_nit_idr/background --motif HGGTA ../meme_out/tye7_nit_idr/dreme_out/dreme.xml ../meme_out/tye7_nit_idr/tye7.nit.idr.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.234843
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc ../meme_out/tye7_nit_idr/fimo_out_4 --bgfile ../meme_out/tye7_nit_idr/background --motif ATATH ../meme_out/tye7_nit_idr/dreme_out/dreme.xml ../meme_out/tye7_nit_idr/tye7.nit.idr.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.287974
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc ../meme_out/tye7_nit_idr/fimo_out_5 --bgfile ../meme_out/tye7_nit_idr/background --motif TGGCMA ../meme_out/tye7_nit_idr/dreme_out/dreme.xml ../meme_out/tye7_nit_idr/tye7.nit.idr.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.26251
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc ../meme_out/tye7_nit_idr/fimo_out_6 --bgfile ../meme_out/tye7_nit_idr/background --motif ASTAC ../meme_out/tye7_nit_idr/dreme_out/dreme.xml ../meme_out/tye7_nit_idr/tye7.nit.idr.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.235032
Writing output
Invoking:
  meme-chip_html_to_tsv ../meme_out/tye7_nit_idr/meme-chip.html ../meme_out/tye7_nit_idr/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.223847
Done