Invoking:
  getsize meme_out/tye7_nit/tye7.nit.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.061479
Invoking:
  fasta-most -min 50 < meme_out/tye7_nit/tye7.nit.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.100918
Invoking:
  fasta-center -dna -len 100 < meme_out/tye7_nit/tye7.nit.fa 1> meme_out/tye7_nit/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.14044
Invoking:
  fasta-shuffle-letters meme_out/tye7_nit/seqs-centered meme_out/tye7_nit/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.036791
Invoking:
  fasta-subsample meme_out/tye7_nit/seqs-centered 600 -rest meme_out/tye7_nit/seqs-discarded -seed 1 1> meme_out/tye7_nit/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.146812
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 meme_out/tye7_nit/tye7.nit.fa meme_out/tye7_nit/background
Finished invoke:
  name: bg  status: 0  time: 0.038237
Invoking:
  meme meme_out/tye7_nit/seqs-sampled -oc meme_out/tye7_nit/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile meme_out/tye7_nit/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 823.863325
Invoking:
  dreme -v 1 -oc meme_out/tye7_nit/dreme_out -png -dna -p meme_out/tye7_nit/seqs-centered -n meme_out/tye7_nit/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 157.433377
Invoking:
  centrimo -seqlen 150 -verbosity 1 -oc meme_out/tye7_nit/centrimo_out -bfile meme_out/tye7_nit/background meme_out/tye7_nit/tye7.nit.fa meme_out/tye7_nit/meme_out/meme.xml meme_out/tye7_nit/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.179078
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 meme_out/tye7_nit/combined.meme meme_out/tye7_nit/combined.meme 1> meme_out/tye7_nit/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.090538
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_nit/spamo_out_1 -bgfile meme_out/tye7_nit/background -primary GAWGANGA meme_out/tye7_nit/tye7.nit.fa meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/meme_out/meme.xml meme_out/tye7_nit/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.473342
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_nit/spamo_out_2 -bgfile meme_out/tye7_nit/background -primary GAARARRAAAAAAADGAMRAD meme_out/tye7_nit/tye7.nit.fa meme_out/tye7_nit/meme_out/meme.xml meme_out/tye7_nit/meme_out/meme.xml meme_out/tye7_nit/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.608878
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_nit/spamo_out_3 -bgfile meme_out/tye7_nit/background -primary YACCR meme_out/tye7_nit/tye7.nit.fa meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/meme_out/meme.xml meme_out/tye7_nit/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.781931
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_nit/spamo_out_4 -bgfile meme_out/tye7_nit/background -primary GHAGWA meme_out/tye7_nit/tye7.nit.fa meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/meme_out/meme.xml meme_out/tye7_nit/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.78722
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_nit/spamo_out_5 -bgfile meme_out/tye7_nit/background -primary ATATYY meme_out/tye7_nit/tye7.nit.fa meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/meme_out/meme.xml meme_out/tye7_nit/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.956708
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_nit/spamo_out_6 -bgfile meme_out/tye7_nit/background -primary CMAAGW meme_out/tye7_nit/tye7.nit.fa meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/meme_out/meme.xml meme_out/tye7_nit/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.743155
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_nit/spamo_out_7 -bgfile meme_out/tye7_nit/background -primary TGGCCW meme_out/tye7_nit/tye7.nit.fa meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/meme_out/meme.xml meme_out/tye7_nit/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.354587
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_nit/spamo_out_8 -bgfile meme_out/tye7_nit/background -primary CARTA meme_out/tye7_nit/tye7.nit.fa meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/meme_out/meme.xml meme_out/tye7_nit/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.824664
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_nit/spamo_out_9 -bgfile meme_out/tye7_nit/background -primary AGCAGBT meme_out/tye7_nit/tye7.nit.fa meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/meme_out/meme.xml meme_out/tye7_nit/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.285091
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_nit/spamo_out_10 -bgfile meme_out/tye7_nit/background -primary CAASG meme_out/tye7_nit/tye7.nit.fa meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/meme_out/meme.xml meme_out/tye7_nit/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.65122
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_nit/spamo_out_11 -bgfile meme_out/tye7_nit/background -primary BTTCTTG meme_out/tye7_nit/tye7.nit.fa meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/meme_out/meme.xml meme_out/tye7_nit/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.446835
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_nit/fimo_out_1 --bgfile meme_out/tye7_nit/background --motif GAWGANGA meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/tye7.nit.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.295267
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_nit/fimo_out_2 --bgfile meme_out/tye7_nit/background --motif GAARARRAAAAAAADGAMRAD meme_out/tye7_nit/meme_out/meme.xml meme_out/tye7_nit/tye7.nit.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.36517
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_nit/fimo_out_3 --bgfile meme_out/tye7_nit/background --motif YACCR meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/tye7.nit.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.229565
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_nit/fimo_out_4 --bgfile meme_out/tye7_nit/background --motif GHAGWA meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/tye7.nit.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.235388
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_nit/fimo_out_5 --bgfile meme_out/tye7_nit/background --motif ATATYY meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/tye7.nit.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.229698
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_nit/fimo_out_6 --bgfile meme_out/tye7_nit/background --motif CMAAGW meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/tye7.nit.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.23615
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_nit/fimo_out_7 --bgfile meme_out/tye7_nit/background --motif TGGCCW meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/tye7.nit.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.230382
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_nit/fimo_out_8 --bgfile meme_out/tye7_nit/background --motif CARTA meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/tye7.nit.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.229135
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_nit/fimo_out_9 --bgfile meme_out/tye7_nit/background --motif AGCAGBT meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/tye7.nit.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.284074
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_nit/fimo_out_10 --bgfile meme_out/tye7_nit/background --motif CAASG meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/tye7.nit.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.47299
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_nit/fimo_out_11 --bgfile meme_out/tye7_nit/background --motif BTTCTTG meme_out/tye7_nit/dreme_out/dreme.xml meme_out/tye7_nit/tye7.nit.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.270433
Writing output
Invoking:
  meme-chip_html_to_tsv meme_out/tye7_nit/meme-chip.html meme_out/tye7_nit/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.209321
Done