# DREME 4.12.0
#     command: dreme -v 1 -oc ../meme_out/tye7_glu_idr/dreme_out -png -dna -p ../meme_out/tye7_glu_idr/seqs-centered -n ../meme_out/tye7_glu_idr/seqs-shuffled
#   positives: 2407 from ../meme_out/tye7_glu_idr/seqs-centered (Wed May 20 14:37:47 PDT 2020)
#   negatives: 2407 from ../meme_out/tye7_glu_idr/seqs-shuffled (Wed May 20 14:37:47 PDT 2020)
#        host: nandi.stanford.edu
#        when: Wed May 20 14:51:22 PDT 2020

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.305 C 0.196 G 0.196 T 0.303


MOTIF ARGAAV DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ARGAAV     BTTCYT       1253        990   1.8e-014   7.6e-010
#           AAGAAG     CTTCTT        321        214   5.5e-007   2.3e-002
#           AGGAAA     TTTCCT        324        231   1.6e-005   6.9e-001
#           AAGAAA     TTTCTT        531        417   2.1e-005   8.9e-001
#           AGGAAG     CTTCCT        189        135   1.1e-003   4.9e+001
#           AAGAAC     GTTCTT        225        169   1.9e-003   8.1e+001
#           AGGAAC     GTTCCT        137        101   9.9e-003   4.3e+002

letter-probability matrix: alength= 4 w= 6 nsites= 1804 E= 7.6e-010
1.000000 0.000000 0.000000 0.000000
0.637472 0.000000 0.362528 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.508315 0.203437 0.288248 0.000000


MOTIF CGTGRY DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CGTGRY     RYCACG        317        170   1.1e-012   4.5e-008
#           CGTGAT     ATCACG        122         65   1.3e-005   5.5e-001
#           CGTGGT     ACCACG         84         41   6.1e-005   2.6e+000
#           CGTGGC     GCCACG         64         33   9.7e-004   4.1e+001
#           CGTGAC     GTCACG         63         38   7.7e-003   3.3e+002

letter-probability matrix: alength= 4 w= 6 nsites= 341 E= 4.5e-008
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.565982 0.000000 0.434018 0.000000
0.000000 0.378299 0.000000 0.621701


MOTIF TGGWA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       TGGWA      TWCCA       1002        776   8.7e-012   3.7e-007
#            TGGTA      TACCA        444        306   2.4e-008   1.0e-003
#            TGGAA      TTCCA        675        541   5.1e-006   2.1e-001

letter-probability matrix: alength= 4 w= 5 nsites= 1283 E= 3.7e-007
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.613406 0.000000 0.000000 0.386594
1.000000 0.000000 0.000000 0.000000


MOTIF GTCAYY DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GTCAYY     RRTGAC        472        317   9.2e-010   3.8e-005
#           GTCATC     GATGAC        145         86   4.3e-005   1.8e+000
#           GTCATT     AATGAC        179        117   1.2e-004   5.0e+000
#           GTCACC     GGTGAC        101         68   6.0e-003   2.5e+002
#           GTCACT     AGTGAC         90         59   6.1e-003   2.5e+002

letter-probability matrix: alength= 4 w= 6 nsites= 529 E= 3.8e-005
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.364839 0.000000 0.635161
0.000000 0.482042 0.000000 0.517958


# Stopping reason: E-value threshold exceeded
#    Running time: 55.91 seconds