Invoking:
  getsize meme_out/tye7_glu/tye7.glu.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.02298
Invoking:
  fasta-most -min 50 < meme_out/tye7_glu/tye7.glu.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.0921
Invoking:
  fasta-center -dna -len 100 < meme_out/tye7_glu/tye7.glu.fa 1> meme_out/tye7_glu/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.140264
Invoking:
  fasta-shuffle-letters meme_out/tye7_glu/seqs-centered meme_out/tye7_glu/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.028841
Invoking:
  fasta-subsample meme_out/tye7_glu/seqs-centered 600 -rest meme_out/tye7_glu/seqs-discarded -seed 1 1> meme_out/tye7_glu/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.125084
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 meme_out/tye7_glu/tye7.glu.fa meme_out/tye7_glu/background
Finished invoke:
  name: bg  status: 0  time: 0.018141
Invoking:
  meme meme_out/tye7_glu/seqs-sampled -oc meme_out/tye7_glu/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile meme_out/tye7_glu/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 822.263069
Invoking:
  dreme -v 1 -oc meme_out/tye7_glu/dreme_out -png -dna -p meme_out/tye7_glu/seqs-centered -n meme_out/tye7_glu/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 144.831916
Invoking:
  centrimo -seqlen 150 -verbosity 1 -oc meme_out/tye7_glu/centrimo_out -bfile meme_out/tye7_glu/background meme_out/tye7_glu/tye7.glu.fa meme_out/tye7_glu/meme_out/meme.xml meme_out/tye7_glu/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.172063
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 meme_out/tye7_glu/combined.meme meme_out/tye7_glu/combined.meme 1> meme_out/tye7_glu/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.180078
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_glu/spamo_out_1 -bgfile meme_out/tye7_glu/background -primary ARGAAR meme_out/tye7_glu/tye7.glu.fa meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/meme_out/meme.xml meme_out/tye7_glu/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.754581
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_glu/spamo_out_2 -bgfile meme_out/tye7_glu/background -primary DTGRTA meme_out/tye7_glu/tye7.glu.fa meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/meme_out/meme.xml meme_out/tye7_glu/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.71731
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_glu/spamo_out_3 -bgfile meme_out/tye7_glu/background -primary RARAARAARAAGAAA meme_out/tye7_glu/tye7.glu.fa meme_out/tye7_glu/meme_out/meme.xml meme_out/tye7_glu/meme_out/meme.xml meme_out/tye7_glu/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.540325
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_glu/spamo_out_4 -bgfile meme_out/tye7_glu/background -primary CANCAG meme_out/tye7_glu/tye7.glu.fa meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/meme_out/meme.xml meme_out/tye7_glu/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.548118
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_glu/spamo_out_5 -bgfile meme_out/tye7_glu/background -primary TCATCR meme_out/tye7_glu/tye7.glu.fa meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/meme_out/meme.xml meme_out/tye7_glu/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.531513
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_glu/spamo_out_6 -bgfile meme_out/tye7_glu/background -primary YCYTYYWYATCKTCDKCSTCRTCVTYWYC meme_out/tye7_glu/tye7.glu.fa meme_out/tye7_glu/meme_out/meme.xml meme_out/tye7_glu/meme_out/meme.xml meme_out/tye7_glu/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.492861
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_glu/spamo_out_7 -bgfile meme_out/tye7_glu/background -primary AGMATAT meme_out/tye7_glu/tye7.glu.fa meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/meme_out/meme.xml meme_out/tye7_glu/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.345535
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_glu/spamo_out_8 -bgfile meme_out/tye7_glu/background -primary CGSTA meme_out/tye7_glu/tye7.glu.fa meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/meme_out/meme.xml meme_out/tye7_glu/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.610822
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_glu/spamo_out_9 -bgfile meme_out/tye7_glu/background -primary CAWCTTCG meme_out/tye7_glu/tye7.glu.fa meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/meme_out/meme.xml meme_out/tye7_glu/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.237738
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_glu/spamo_out_10 -bgfile meme_out/tye7_glu/background -primary CASGTGA meme_out/tye7_glu/tye7.glu.fa meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/meme_out/meme.xml meme_out/tye7_glu/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.400876
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_glu/spamo_out_11 -bgfile meme_out/tye7_glu/background -primary CTTCSCCA meme_out/tye7_glu/tye7.glu.fa meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/meme_out/meme.xml meme_out/tye7_glu/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.255186
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_glu/fimo_out_1 --bgfile meme_out/tye7_glu/background --motif ARGAAR meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/tye7.glu.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.306458
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_glu/fimo_out_2 --bgfile meme_out/tye7_glu/background --motif DTGRTA meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/tye7.glu.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.27634
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_glu/fimo_out_3 --bgfile meme_out/tye7_glu/background --motif RARAARAARAAGAAA meme_out/tye7_glu/meme_out/meme.xml meme_out/tye7_glu/tye7.glu.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.407245
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_glu/fimo_out_4 --bgfile meme_out/tye7_glu/background --motif CANCAG meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/tye7.glu.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.311697
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_glu/fimo_out_5 --bgfile meme_out/tye7_glu/background --motif TCATCR meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/tye7.glu.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.243152
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_glu/fimo_out_6 --bgfile meme_out/tye7_glu/background --motif YCYTYYWYATCKTCDKCSTCRTCVTYWYC meme_out/tye7_glu/meme_out/meme.xml meme_out/tye7_glu/tye7.glu.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.442591
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_glu/fimo_out_7 --bgfile meme_out/tye7_glu/background --motif AGMATAT meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/tye7.glu.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.300214
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_glu/fimo_out_8 --bgfile meme_out/tye7_glu/background --motif CGSTA meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/tye7.glu.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.280855
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_glu/fimo_out_9 --bgfile meme_out/tye7_glu/background --motif CAWCTTCG meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/tye7.glu.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.318234
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_glu/fimo_out_10 --bgfile meme_out/tye7_glu/background --motif CASGTGA meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/tye7.glu.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.606016
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_glu/fimo_out_11 --bgfile meme_out/tye7_glu/background --motif CTTCSCCA meme_out/tye7_glu/dreme_out/dreme.xml meme_out/tye7_glu/tye7.glu.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.398973
Writing output
Invoking:
  meme-chip_html_to_tsv meme_out/tye7_glu/meme-chip.html meme_out/tye7_glu/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.250569
Done