# DREME 4.12.0 # command: dreme -v 1 -oc meme_out/tye7_glu/dreme_out -png -dna -p meme_out/tye7_glu/seqs-centered -n meme_out/tye7_glu/seqs-shuffled # positives: 3396 from meme_out/tye7_glu/seqs-centered (Wed May 20 12:00:48 PDT 2020) # negatives: 3396 from meme_out/tye7_glu/seqs-shuffled (Wed May 20 12:00:48 PDT 2020) # host: nandi.stanford.edu # when: Wed May 20 12:14:37 PDT 2020 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.306 C 0.194 G 0.196 T 0.304 MOTIF ARGAAR DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ARGAAR YTTCYT 1510 1165 6.1e-018 2.6e-013 # AGGAAA TTTCCT 476 296 3.2e-012 1.4e-007 # AAGAAA TTTCTT 742 576 2.0e-007 8.8e-003 # AAGAAG CTTCTT 463 332 4.4e-007 1.9e-002 # AGGAAG CTTCCT 254 184 3.2e-004 1.4e+001 letter-probability matrix: alength= 4 w= 6 nsites= 2045 E= 2.6e-013 1.000000 0.000000 0.000000 0.000000 0.640098 0.000000 0.359902 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.642054 0.000000 0.357946 0.000000 MOTIF DTGRTA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST DTGRTA TAYCAH 1168 877 7.9e-015 3.4e-010 # GTGGTA TACCAC 134 70 3.2e-006 1.4e-001 # ATGGTA TACCAT 217 136 5.7e-006 2.5e-001 # GTGATA TATCAC 195 131 1.7e-004 7.3e+000 # TTGATA TATCAA 319 243 4.7e-004 2.0e+001 # TTGGTA TACCAA 210 150 6.8e-004 3.0e+001 # ATGATA TATCAT 297 240 5.9e-003 2.5e+002 letter-probability matrix: alength= 4 w= 6 nsites= 1404 E= 3.4e-010 0.367521 0.000000 0.240028 0.392450 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.593305 0.000000 0.406695 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CANCAG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CANCAG CTGNTG 634 441 7.9e-011 3.4e-006 # CACCAG CTGGTG 143 86 7.8e-005 3.3e+000 # CAGCAG CTGCTG 178 116 1.3e-004 5.6e+000 # CAACAG CTGTTG 195 134 3.4e-004 1.4e+001 # CATCAG CTGATG 187 130 6.2e-004 2.7e+001 letter-probability matrix: alength= 4 w= 6 nsites= 717 E= 3.4e-006 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.283124 0.203626 0.244073 0.269177 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TCATCR DREME-4 # Word RC Word Pos Neg P-value E-value # BEST TCATCR YGATGA 436 296 2.5e-008 1.0e-003 # TCATCG CGATGA 177 109 2.4e-005 1.0e+000 # TCATCA TGATGA 276 198 1.2e-004 5.1e+000 letter-probability matrix: alength= 4 w= 6 nsites= 465 E= 1.0e-003 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.610753 0.000000 0.389247 0.000000 MOTIF CGSTA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CGSTA TASCG 617 462 1.5e-007 6.5e-003 # CGGTA TACCG 323 238 1.0e-004 4.4e+000 # CGCTA TAGCG 330 246 1.5e-004 6.2e+000 letter-probability matrix: alength= 4 w= 5 nsites= 681 E= 6.5e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500734 0.499266 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGMATAT DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AGMATAT ATATKCT 151 75 1.5e-007 6.4e-003 # AGAATAT ATATTCT 110 51 1.5e-006 6.1e-002 # AGCATAT ATATGCT 45 24 7.5e-003 3.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 155 E= 6.4e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.716129 0.283871 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CAWCTTCG DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CAWCTTCG CGAAGWTG 36 5 3.7e-007 1.5e-002 # CATCTTCG CGAAGATG 21 2 3.2e-005 1.3e+000 # CAACTTCG CGAAGTTG 15 3 3.7e-003 1.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.5e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.416667 0.000000 0.000000 0.583333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CASGTGA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CASGTGA TCACSTG 95 39 5.7e-007 2.4e-002 # CACGTGA TCACGTG 48 18 1.3e-004 5.6e+000 # CAGGTGA TCACCTG 47 21 1.0e-003 4.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 97 E= 2.4e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.515464 0.484536 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTTCSCCA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CTTCSCCA TGGSGAAG 32 4 9.2e-007 3.8e-002 # CTTCCCCA TGGGGAAG 18 1 3.7e-005 1.6e+000 # CTTCGCCA TGGCGAAG 14 3 6.3e-003 2.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 3.8e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.562500 0.437500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 144.23 seconds