# DREME 4.12.0 # command: dreme -v 1 -oc meme_out/tye7_eth/dreme_out -png -dna -p meme_out/tye7_eth/seqs-centered -n meme_out/tye7_eth/seqs-shuffled # positives: 1897 from meme_out/tye7_eth/seqs-centered (Wed May 20 12:00:29 PDT 2020) # negatives: 1897 from meme_out/tye7_eth/seqs-shuffled (Wed May 20 12:00:29 PDT 2020) # host: nandi.stanford.edu # when: Wed May 20 12:14:17 PDT 2020 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.303 C 0.196 G 0.200 T 0.301 MOTIF GWAGWA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GWAGWA TWCTWC 592 377 6.6e-016 2.8e-011 # GAAGAA TTCTTC 312 173 7.4e-012 3.1e-007 # GAAGTA TACTTC 146 92 1.8e-004 7.8e+000 # GTAGAA TTCTAC 122 79 1.1e-003 4.8e+001 # GTAGTA TACTAC 86 56 6.4e-003 2.7e+002 letter-probability matrix: alength= 4 w= 6 nsites= 701 E= 2.8e-011 0.000000 0.000000 1.000000 0.000000 0.708987 0.000000 0.000000 0.291013 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.677603 0.000000 0.000000 0.322397 1.000000 0.000000 0.000000 0.000000 MOTIF GGTA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GGTA TACC 817 621 3.2e-011 1.4e-006 # GGTA TACC 817 621 3.2e-011 1.4e-006 letter-probability matrix: alength= 4 w= 4 nsites= 1052 E= 1.4e-006 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAAGRAAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AAAGRAAA TTTYCTTT 151 63 2.7e-010 1.1e-005 # AAAGAAAA TTTTCTTT 105 44 1.9e-007 7.5e-003 # AAAGGAAA TTTCCTTT 50 22 5.8e-004 2.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 156 E= 1.1e-005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.692308 0.000000 0.307692 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CASGTGM DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CASGTGM KCACSTG 96 37 9.9e-008 4.0e-003 # CACGTGC GCACGTG 20 3 2.4e-004 9.5e+000 # CAGGTGA TCACCTG 39 15 6.9e-004 2.8e+001 # CAGGTGC GCACCTG 19 5 3.2e-003 1.3e+002 # CACGTGA TCACGTG 33 15 6.4e-003 2.6e+002 letter-probability matrix: alength= 4 w= 7 nsites= 102 E= 4.0e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.421569 0.578431 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.676471 0.323529 0.000000 0.000000 MOTIF CWTCCAC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CWTCCAC GTGGAWG 53 12 1.1e-007 4.5e-003 # CTTCCAC GTGGAAG 32 7 3.2e-005 1.3e+000 # CATCCAC GTGGATG 21 5 1.2e-003 4.8e+001 letter-probability matrix: alength= 4 w= 7 nsites= 53 E= 4.5e-003 0.000000 1.000000 0.000000 0.000000 0.396226 0.000000 0.000000 0.603774 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CVTCATC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CVTCATC GATGABG 106 48 1.1e-006 4.3e-002 # CCTCATC GATGAGG 28 8 5.7e-004 2.3e+001 # CGTCATC GATGACG 26 8 1.4e-003 5.6e+001 # CATCATC GATGATG 58 32 3.7e-003 1.5e+002 letter-probability matrix: alength= 4 w= 7 nsites= 108 E= 4.3e-002 0.000000 1.000000 0.000000 0.000000 0.527778 0.240741 0.231481 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 65.65 seconds