Invoking:
  getsize meme_out/tye7_ana/tye7.ana.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.035476
Invoking:
  fasta-most -min 50 < meme_out/tye7_ana/tye7.ana.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.098852
Invoking:
  fasta-center -dna -len 100 < meme_out/tye7_ana/tye7.ana.fa 1> meme_out/tye7_ana/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.160452
Invoking:
  fasta-shuffle-letters meme_out/tye7_ana/seqs-centered meme_out/tye7_ana/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.041829
Invoking:
  fasta-subsample meme_out/tye7_ana/seqs-centered 600 -rest meme_out/tye7_ana/seqs-discarded -seed 1 1> meme_out/tye7_ana/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.156572
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 meme_out/tye7_ana/tye7.ana.fa meme_out/tye7_ana/background
Finished invoke:
  name: bg  status: 0  time: 0.029628
Invoking:
  meme meme_out/tye7_ana/seqs-sampled -oc meme_out/tye7_ana/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile meme_out/tye7_ana/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 807.854518
Invoking:
  dreme -v 1 -oc meme_out/tye7_ana/dreme_out -png -dna -p meme_out/tye7_ana/seqs-centered -n meme_out/tye7_ana/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 315.067134
Invoking:
  centrimo -seqlen 150 -verbosity 1 -oc meme_out/tye7_ana/centrimo_out -bfile meme_out/tye7_ana/background meme_out/tye7_ana/tye7.ana.fa meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.31608
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 meme_out/tye7_ana/combined.meme meme_out/tye7_ana/combined.meme 1> meme_out/tye7_ana/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.271839
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_ana/spamo_out_1 -bgfile meme_out/tye7_ana/background -primary BTTCTTS meme_out/tye7_ana/tye7.ana.fa meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.91927
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_ana/spamo_out_2 -bgfile meme_out/tye7_ana/background -primary YACCR meme_out/tye7_ana/tye7.ana.fa meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 1.31505
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_ana/spamo_out_3 -bgfile meme_out/tye7_ana/background -primary TTYWTTHWYTTYHTYTTCT meme_out/tye7_ana/tye7.ana.fa meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.979294
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_ana/spamo_out_4 -bgfile meme_out/tye7_ana/background -primary GAKGANGA meme_out/tye7_ana/tye7.ana.fa meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.526175
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_ana/spamo_out_5 -bgfile meme_out/tye7_ana/background -primary ATATWY meme_out/tye7_ana/tye7.ana.fa meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 1.277703
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_ana/spamo_out_6 -bgfile meme_out/tye7_ana/background -primary GCTGCYR meme_out/tye7_ana/tye7.ana.fa meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.430851
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_ana/spamo_out_7 -bgfile meme_out/tye7_ana/background -primary CYACTR meme_out/tye7_ana/tye7.ana.fa meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.703289
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_ana/spamo_out_8 -bgfile meme_out/tye7_ana/background -primary GAARA meme_out/tye7_ana/tye7.ana.fa meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 1.163639
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_ana/spamo_out_9 -bgfile meme_out/tye7_ana/background -primary BKCTGCTGCHGSTRCYGYTGBWRMTGYTG meme_out/tye7_ana/tye7.ana.fa meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.35402
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_ana/spamo_out_10 -bgfile meme_out/tye7_ana/background -primary TTGATRA meme_out/tye7_ana/tye7.ana.fa meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.550361
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_ana/spamo_out_11 -bgfile meme_out/tye7_ana/background -primary AATARTAA meme_out/tye7_ana/tye7.ana.fa meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.426495
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_ana/spamo_out_12 -bgfile meme_out/tye7_ana/background -primary CAATAHC meme_out/tye7_ana/tye7.ana.fa meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.475184
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_ana/spamo_out_13 -bgfile meme_out/tye7_ana/background -primary CTRCTTC meme_out/tye7_ana/tye7.ana.fa meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.393265
Invoking:
  spamo -verbosity 1 -oc meme_out/tye7_ana/spamo_out_14 -bgfile meme_out/tye7_ana/background -primary AGAGCCAY meme_out/tye7_ana/tye7.ana.fa meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.25472
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_ana/fimo_out_1 --bgfile meme_out/tye7_ana/background --motif BTTCTTS meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/tye7.ana.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.399085
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_ana/fimo_out_2 --bgfile meme_out/tye7_ana/background --motif YACCR meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/tye7.ana.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.388962
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_ana/fimo_out_3 --bgfile meme_out/tye7_ana/background --motif TTYWTTHWYTTYHTYTTCT meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/tye7.ana.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.500973
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_ana/fimo_out_4 --bgfile meme_out/tye7_ana/background --motif GAKGANGA meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/tye7.ana.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.410865
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_ana/fimo_out_5 --bgfile meme_out/tye7_ana/background --motif ATATWY meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/tye7.ana.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.396785
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_ana/fimo_out_6 --bgfile meme_out/tye7_ana/background --motif GCTGCYR meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/tye7.ana.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.384579
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_ana/fimo_out_7 --bgfile meme_out/tye7_ana/background --motif CYACTR meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/tye7.ana.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.376101
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_ana/fimo_out_8 --bgfile meme_out/tye7_ana/background --motif GAARA meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/tye7.ana.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.348441
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_ana/fimo_out_9 --bgfile meme_out/tye7_ana/background --motif BKCTGCTGCHGSTRCYGYTGBWRMTGYTG meme_out/tye7_ana/meme_out/meme.xml meme_out/tye7_ana/tye7.ana.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.515501
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_ana/fimo_out_10 --bgfile meme_out/tye7_ana/background --motif TTGATRA meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/tye7.ana.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.36558
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_ana/fimo_out_11 --bgfile meme_out/tye7_ana/background --motif AATARTAA meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/tye7.ana.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.389721
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_ana/fimo_out_12 --bgfile meme_out/tye7_ana/background --motif CAATAHC meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/tye7.ana.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.3662
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_ana/fimo_out_13 --bgfile meme_out/tye7_ana/background --motif CTRCTTC meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/tye7.ana.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.378199
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/tye7_ana/fimo_out_14 --bgfile meme_out/tye7_ana/background --motif AGAGCCAY meme_out/tye7_ana/dreme_out/dreme.xml meme_out/tye7_ana/tye7.ana.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.383462
Writing output
Invoking:
  meme-chip_html_to_tsv meme_out/tye7_ana/meme-chip.html meme_out/tye7_ana/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.213728
Done