# DREME 4.12.0
#     command: dreme -v 1 -oc ../meme_out/cbf1_nit_idr/dreme_out -png -dna -p ../meme_out/cbf1_nit_idr/seqs-centered -n ../meme_out/cbf1_nit_idr/seqs-shuffled
#   positives: 459 from ../meme_out/cbf1_nit_idr/seqs-centered (Wed May 20 14:37:14 PDT 2020)
#   negatives: 459 from ../meme_out/cbf1_nit_idr/seqs-shuffled (Wed May 20 14:37:14 PDT 2020)
#        host: nandi.stanford.edu
#        when: Wed May 20 14:44:45 PDT 2020

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.301 C 0.199 G 0.199 T 0.301


MOTIF CACGTG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CACGTG     CACGTG        191          8   4.7e-057   1.5e-052
#           CACGTG     CACGTG        191          8   4.7e-057   1.5e-052

letter-probability matrix: alength= 4 w= 6 nsites= 197 E= 1.5e-052
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF TGRAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      TGRAAA     TTTYCA        146         76   4.3e-008   1.3e-003
#           TGAAAA     TTTTCA        109         60   2.0e-005   6.1e-001
#           TGGAAA     TTTCCA         53         21   7.0e-005   2.1e+000

letter-probability matrix: alength= 4 w= 6 nsites= 181 E= 1.3e-003
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.690608 0.000000 0.309392 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CATGTGAY DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATGTGAY   RTCACATG         27          1   7.5e-008   2.3e-003
#         CATGTGAC   GTCACATG         16          0   1.3e-005   4.0e-001
#         CATGTGAT   ATCACATG         11          1   3.0e-003   9.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 2.3e-003
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.592593 0.000000 0.407407


# Stopping reason: E-value threshold exceeded
#    Running time: 10.65 seconds