# DREME 4.12.0
#     command: dreme -v 1 -oc meme_out/cbf1_nit/dreme_out -png -dna -p meme_out/cbf1_nit/seqs-centered -n meme_out/cbf1_nit/seqs-shuffled
#   positives: 587 from meme_out/cbf1_nit/seqs-centered (Wed May 20 11:59:47 PDT 2020)
#   negatives: 587 from meme_out/cbf1_nit/seqs-shuffled (Wed May 20 11:59:47 PDT 2020)
#        host: nandi.stanford.edu
#        when: Wed May 20 12:12:33 PDT 2020

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.302 C 0.199 G 0.199 T 0.300


MOTIF CACGTGH DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CACGTGH    DCACGTG        206          5   7.7e-064   2.6e-059
#          CACGTGA    TCACGTG        165          2   1.4e-052   4.9e-048
#          CACGTGC    GCACGTG        107          2   5.4e-032   1.8e-027
#          CACGTGT    ACACGTG         47          2   9.0e-013   3.1e-008

letter-probability matrix: alength= 4 w= 7 nsites= 215 E= 2.6e-059
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.595349 0.265116 0.000000 0.139535


MOTIF AAGAARGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGAARGA   TCYTTCTT         26          2   1.2e-006   3.9e-002
#         AAGAAAGA   TCTTTCTT         16          1   1.3e-004   4.2e+000
#         AAGAAGGA   TCCTTCTT         11          1   3.1e-003   1.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 3.9e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.592593 0.000000 0.407407 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 10.57 seconds