Invoking:
  getsize ../meme_out/cbf1_glu_idr/cbf1.glu.idr.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.045728
Invoking:
  fasta-most -min 50 < ../meme_out/cbf1_glu_idr/cbf1.glu.idr.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.090441
Invoking:
  fasta-center -dna -len 100 < ../meme_out/cbf1_glu_idr/cbf1.glu.idr.fa 1> ../meme_out/cbf1_glu_idr/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.121031
Invoking:
  fasta-shuffle-letters ../meme_out/cbf1_glu_idr/seqs-centered ../meme_out/cbf1_glu_idr/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.018381
Invoking:
  fasta-subsample ../meme_out/cbf1_glu_idr/seqs-centered 600 -rest ../meme_out/cbf1_glu_idr/seqs-discarded -seed 1 1> ../meme_out/cbf1_glu_idr/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.105481
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 ../meme_out/cbf1_glu_idr/cbf1.glu.idr.fa ../meme_out/cbf1_glu_idr/background
Finished invoke:
  name: bg  status: 0  time: 0.011816
Invoking:
  meme ../meme_out/cbf1_glu_idr/seqs-sampled -oc ../meme_out/cbf1_glu_idr/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile ../meme_out/cbf1_glu_idr/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 780.580523
Invoking:
  dreme -v 1 -oc ../meme_out/cbf1_glu_idr/dreme_out -png -dna -p ../meme_out/cbf1_glu_idr/seqs-centered -n ../meme_out/cbf1_glu_idr/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 27.917148
Invoking:
  centrimo -seqlen 762 -verbosity 1 -oc ../meme_out/cbf1_glu_idr/centrimo_out -bfile ../meme_out/cbf1_glu_idr/background ../meme_out/cbf1_glu_idr/cbf1.glu.idr.fa ../meme_out/cbf1_glu_idr/meme_out/meme.xml ../meme_out/cbf1_glu_idr/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.315605
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 ../meme_out/cbf1_glu_idr/combined.meme ../meme_out/cbf1_glu_idr/combined.meme 1> ../meme_out/cbf1_glu_idr/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.082366
Invoking:
  spamo -verbosity 1 -oc ../meme_out/cbf1_glu_idr/spamo_out_1 -bgfile ../meme_out/cbf1_glu_idr/background -primary RTCACGTG ../meme_out/cbf1_glu_idr/cbf1.glu.idr.fa ../meme_out/cbf1_glu_idr/meme_out/meme.xml ../meme_out/cbf1_glu_idr/meme_out/meme.xml ../meme_out/cbf1_glu_idr/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.905339
Invoking:
  spamo -verbosity 1 -oc ../meme_out/cbf1_glu_idr/spamo_out_2 -bgfile ../meme_out/cbf1_glu_idr/background -primary RARRAAAAARRAAAAARAAA ../meme_out/cbf1_glu_idr/cbf1.glu.idr.fa ../meme_out/cbf1_glu_idr/meme_out/meme.xml ../meme_out/cbf1_glu_idr/meme_out/meme.xml ../meme_out/cbf1_glu_idr/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.700357
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc ../meme_out/cbf1_glu_idr/fimo_out_1 --bgfile ../meme_out/cbf1_glu_idr/background --motif RTCACGTG ../meme_out/cbf1_glu_idr/meme_out/meme.xml ../meme_out/cbf1_glu_idr/cbf1.glu.idr.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.42302
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc ../meme_out/cbf1_glu_idr/fimo_out_2 --bgfile ../meme_out/cbf1_glu_idr/background --motif RARRAAAAARRAAAAARAAA ../meme_out/cbf1_glu_idr/meme_out/meme.xml ../meme_out/cbf1_glu_idr/cbf1.glu.idr.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.453224
Writing output
Invoking:
  meme-chip_html_to_tsv ../meme_out/cbf1_glu_idr/meme-chip.html ../meme_out/cbf1_glu_idr/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.528753
Done