# DREME 4.12.0 # command: dreme -v 1 -oc ../meme_out/cbf1_glu_idr/dreme_out -png -dna -p ../meme_out/cbf1_glu_idr/seqs-centered -n ../meme_out/cbf1_glu_idr/seqs-shuffled # positives: 996 from ../meme_out/cbf1_glu_idr/seqs-centered (Wed May 20 14:37:04 PDT 2020) # negatives: 996 from ../meme_out/cbf1_glu_idr/seqs-shuffled (Wed May 20 14:37:05 PDT 2020) # host: nandi.stanford.edu # when: Wed May 20 14:50:11 PDT 2020 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.298 C 0.203 G 0.204 T 0.295 MOTIF CACGTGVH DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CACGTGVH DBCACGTG 327 14 7.0e-092 2.8e-087 # CACGTGAT ATCACGTG 112 4 4.1e-030 1.6e-025 # CACGTGAC GTCACGTG 81 0 7.6e-026 3.0e-021 # CACGTGCT AGCACGTG 72 2 4.2e-020 1.6e-015 # CACGTGAA TTCACGTG 59 3 3.9e-015 1.5e-010 # CACGTGCC GGCACGTG 41 3 5.6e-010 2.2e-005 # CACGTGCA TGCACGTG 46 5 7.6e-010 3.0e-005 # CACGTGGT ACCACGTG 37 2 1.0e-009 4.1e-005 # CACGTGGA TCCACGTG 30 1 1.2e-008 4.7e-004 # CACGTGGC GCCACGTG 28 1 4.7e-008 1.8e-003 letter-probability matrix: alength= 4 w= 8 nsites= 341 E= 2.8e-087 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.519062 0.290323 0.190616 0.000000 0.228739 0.313783 0.000000 0.457478 MOTIF CAKGTGAY DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CAKGTGAY RTCACMTG 112 14 1.4e-021 5.5e-017 # CATGTGAT ATCACATG 44 4 5.1e-010 1.9e-005 # CATGTGAC GTCACATG 34 5 9.8e-007 3.8e-002 # CAGGTGAC GTCACCTG 15 1 2.5e-004 9.5e+000 # CAGGTGAT ATCACCTG 19 4 1.2e-003 4.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 113 E= 5.5e-017 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.300885 0.699115 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.433628 0.000000 0.566372 MOTIF AACGTGAY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AACGTGAY RTCACGTT 54 3 1.1e-013 4.2e-009 # AACGTGAC GTCACGTT 29 2 1.9e-007 7.4e-003 # AACGTGAT ATCACGTT 25 1 3.5e-007 1.3e-002 letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 4.2e-009 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.537037 0.000000 0.462963 MOTIF AAAARRAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AAAARRAA TTYYTTTT 185 81 3.4e-012 1.3e-007 # AAAAAGAA TTCTTTTT 70 25 1.3e-006 4.8e-002 # AAAAAAAA TTTTTTTT 95 43 2.7e-006 1.0e-001 # AAAAGAAA TTTCTTTT 66 29 6.5e-005 2.5e+000 # AAAAGGAA TTCCTTTT 22 4 2.5e-004 9.4e+000 letter-probability matrix: alength= 4 w= 8 nsites= 222 E= 1.3e-007 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.662162 0.000000 0.337838 0.000000 0.711712 0.000000 0.288288 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 27.17 seconds