Invoking:
  getsize meme_out/cbf1_glu/cbf1.glu.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.018208
Invoking:
  fasta-most -min 50 < meme_out/cbf1_glu/cbf1.glu.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.089089
Invoking:
  fasta-center -dna -len 100 < meme_out/cbf1_glu/cbf1.glu.fa 1> meme_out/cbf1_glu/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.122625
Invoking:
  fasta-shuffle-letters meme_out/cbf1_glu/seqs-centered meme_out/cbf1_glu/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.021388
Invoking:
  fasta-subsample meme_out/cbf1_glu/seqs-centered 600 -rest meme_out/cbf1_glu/seqs-discarded -seed 1 1> meme_out/cbf1_glu/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.105614
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 meme_out/cbf1_glu/cbf1.glu.fa meme_out/cbf1_glu/background
Finished invoke:
  name: bg  status: 0  time: 0.019693
Invoking:
  meme meme_out/cbf1_glu/seqs-sampled -oc meme_out/cbf1_glu/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile meme_out/cbf1_glu/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 768.449796
Invoking:
  dreme -v 1 -oc meme_out/cbf1_glu/dreme_out -png -dna -p meme_out/cbf1_glu/seqs-centered -n meme_out/cbf1_glu/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 47.561037
Invoking:
  centrimo -seqlen 762 -verbosity 1 -oc meme_out/cbf1_glu/centrimo_out -bfile meme_out/cbf1_glu/background meme_out/cbf1_glu/cbf1.glu.fa meme_out/cbf1_glu/meme_out/meme.xml meme_out/cbf1_glu/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.213388
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 meme_out/cbf1_glu/combined.meme meme_out/cbf1_glu/combined.meme 1> meme_out/cbf1_glu/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.07277
Invoking:
  spamo -verbosity 1 -oc meme_out/cbf1_glu/spamo_out_1 -bgfile meme_out/cbf1_glu/background -primary CACGTGAY meme_out/cbf1_glu/cbf1.glu.fa meme_out/cbf1_glu/meme_out/meme.xml meme_out/cbf1_glu/meme_out/meme.xml meme_out/cbf1_glu/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 1.259028
Invoking:
  spamo -verbosity 1 -oc meme_out/cbf1_glu/spamo_out_2 -bgfile meme_out/cbf1_glu/background -primary HTTTTTYTTTTBWYTTYYT meme_out/cbf1_glu/cbf1.glu.fa meme_out/cbf1_glu/meme_out/meme.xml meme_out/cbf1_glu/meme_out/meme.xml meme_out/cbf1_glu/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.757136
Invoking:
  spamo -verbosity 1 -oc meme_out/cbf1_glu/spamo_out_3 -bgfile meme_out/cbf1_glu/background -primary GAARAA meme_out/cbf1_glu/cbf1.glu.fa meme_out/cbf1_glu/dreme_out/dreme.xml meme_out/cbf1_glu/meme_out/meme.xml meme_out/cbf1_glu/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.865334
Invoking:
  spamo -verbosity 1 -oc meme_out/cbf1_glu/spamo_out_4 -bgfile meme_out/cbf1_glu/background -primary RTAATA meme_out/cbf1_glu/cbf1.glu.fa meme_out/cbf1_glu/dreme_out/dreme.xml meme_out/cbf1_glu/meme_out/meme.xml meme_out/cbf1_glu/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.780372
Invoking:
  spamo -verbosity 1 -oc meme_out/cbf1_glu/spamo_out_5 -bgfile meme_out/cbf1_glu/background -primary TTCCW meme_out/cbf1_glu/cbf1.glu.fa meme_out/cbf1_glu/dreme_out/dreme.xml meme_out/cbf1_glu/meme_out/meme.xml meme_out/cbf1_glu/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 1.02397
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/cbf1_glu/fimo_out_1 --bgfile meme_out/cbf1_glu/background --motif CACGTGAY meme_out/cbf1_glu/meme_out/meme.xml meme_out/cbf1_glu/cbf1.glu.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.288322
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/cbf1_glu/fimo_out_2 --bgfile meme_out/cbf1_glu/background --motif HTTTTTYTTTTBWYTTYYT meme_out/cbf1_glu/meme_out/meme.xml meme_out/cbf1_glu/cbf1.glu.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.362114
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/cbf1_glu/fimo_out_3 --bgfile meme_out/cbf1_glu/background --motif GAARAA meme_out/cbf1_glu/dreme_out/dreme.xml meme_out/cbf1_glu/cbf1.glu.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.188695
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/cbf1_glu/fimo_out_4 --bgfile meme_out/cbf1_glu/background --motif RTAATA meme_out/cbf1_glu/dreme_out/dreme.xml meme_out/cbf1_glu/cbf1.glu.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.192006
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/cbf1_glu/fimo_out_5 --bgfile meme_out/cbf1_glu/background --motif TTCCW meme_out/cbf1_glu/dreme_out/dreme.xml meme_out/cbf1_glu/cbf1.glu.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.184764
Writing output
Invoking:
  meme-chip_html_to_tsv meme_out/cbf1_glu/meme-chip.html meme_out/cbf1_glu/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.202692
Done