# DREME 4.12.0 # command: dreme -v 1 -oc meme_out/cbf1_glu/dreme_out -png -dna -p meme_out/cbf1_glu/seqs-centered -n meme_out/cbf1_glu/seqs-shuffled # positives: 1150 from meme_out/cbf1_glu/seqs-centered (Wed May 20 11:59:12 PDT 2020) # negatives: 1150 from meme_out/cbf1_glu/seqs-shuffled (Wed May 20 11:59:12 PDT 2020) # host: nandi.stanford.edu # when: Wed May 20 12:12:06 PDT 2020 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.297 C 0.204 G 0.204 T 0.295 MOTIF CAYGTGM DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CAYGTGM KCACRTG 454 38 8.9e-113 3.6e-108 # CACGTGA TCACGTG 240 11 4.1e-063 1.7e-058 # CACGTGC GCACGTG 183 6 4.8e-050 1.9e-045 # CATGTGA TCACATG 105 12 7.3e-021 2.9e-016 # CATGTGC GCACATG 33 12 1.1e-003 4.5e+001 letter-probability matrix: alength= 4 w= 7 nsites= 482 E= 3.6e-108 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.715768 0.000000 0.284232 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.661826 0.338174 0.000000 0.000000 MOTIF GAARAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GAARAA TTYTTC 412 244 4.8e-015 1.9e-010 # GAAAAA TTTTTC 305 176 2.1e-011 8.5e-007 # GAAGAA TTCTTC 154 87 3.1e-006 1.2e-001 letter-probability matrix: alength= 4 w= 6 nsites= 525 E= 1.9e-010 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.699048 0.000000 0.300952 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AMACGTG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AMACGTG CACGTKT 91 15 2.6e-015 1.0e-010 # AAACGTG CACGTTT 58 9 2.0e-010 7.8e-006 # ACACGTG CACGTGT 33 6 6.1e-006 2.4e-001 letter-probability matrix: alength= 4 w= 7 nsites= 92 E= 1.0e-010 1.000000 0.000000 0.000000 0.000000 0.641304 0.358696 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CGTGAY DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CGTGAY RTCACG 168 82 4.6e-009 1.8e-004 # CGTGAC GTCACG 88 36 9.1e-007 3.5e-002 # CGTGAT ATCACG 83 47 7.4e-004 2.9e+001 letter-probability matrix: alength= 4 w= 6 nsites= 175 E= 1.8e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.508571 0.000000 0.491429 MOTIF CACCTGAY DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CACCTGAY RTCAGGTG 40 5 3.0e-008 1.2e-003 # CACCTGAT ATCAGGTG 18 1 3.6e-005 1.4e+000 # CACCTGAC GTCAGGTG 22 4 2.5e-004 9.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 1.2e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.550000 0.000000 0.450000 MOTIF RTAATA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST RTAATA TATTAY 215 125 7.4e-008 2.9e-003 # ATAATA TATTAT 139 76 3.9e-006 1.5e-001 # GTAATA TATTAC 90 56 2.3e-003 8.9e+001 letter-probability matrix: alength= 4 w= 6 nsites= 235 E= 2.9e-003 0.621277 0.000000 0.378723 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TTCCW DREME-7 # Word RC Word Pos Neg P-value E-value # BEST TTCCW WGGAA 502 386 4.1e-007 1.6e-002 # TTCCT AGGAA 269 192 3.7e-005 1.4e+000 # TTCCA TGGAA 300 228 2.1e-004 8.2e+000 letter-probability matrix: alength= 4 w= 5 nsites= 643 E= 1.6e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.541213 0.000000 0.000000 0.458787 # Stopping reason: E-value threshold exceeded # Running time: 47.05 seconds