# DREME 4.12.0 # command: dreme -v 1 -oc ../meme_out/cbf1_eth_idr/dreme_out -png -dna -p ../meme_out/cbf1_eth_idr/seqs-centered -n ../meme_out/cbf1_eth_idr/seqs-shuffled # positives: 1087 from ../meme_out/cbf1_eth_idr/seqs-centered (Wed May 20 14:36:54 PDT 2020) # negatives: 1087 from ../meme_out/cbf1_eth_idr/seqs-shuffled (Wed May 20 14:36:54 PDT 2020) # host: nandi.stanford.edu # when: Wed May 20 14:49:59 PDT 2020 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.298 C 0.202 G 0.202 T 0.298 MOTIF CACGKG DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CACGKG CMCGTG 369 29 1.1e-090 4.4e-086 # CACGTG CACGTG 332 18 5.0e-088 2.0e-083 # CACGGG CCCGTG 40 12 5.3e-005 2.1e+000 letter-probability matrix: alength= 4 w= 6 nsites= 383 E= 4.4e-086 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.104439 0.895561 0.000000 0.000000 1.000000 0.000000 MOTIF CAKGTGAY DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CAKGTGAY RTCACMTG 105 12 6.5e-021 2.5e-016 # CATGTGAT ATCACATG 41 1 6.8e-012 2.6e-007 # CATGTGAC GTCACATG 34 3 5.0e-008 1.9e-003 # CAGGTGAC GTCACCTG 14 3 6.2e-003 2.4e+002 # CAGGTGAT ATCACCTG 17 5 8.2e-003 3.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 107 E= 2.5e-016 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.289720 0.710280 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.448598 0.000000 0.551402 MOTIF AAAAARAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AAAAARAA TTYTTTTT 155 64 4.1e-011 1.6e-006 # AAAAAGAA TTCTTTTT 78 23 8.6e-009 3.3e-004 # AAAAAAAA TTTTTTTT 97 44 2.4e-006 9.2e-002 letter-probability matrix: alength= 4 w= 8 nsites= 182 E= 1.6e-006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.587912 0.000000 0.412088 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CGTGACH DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CGTGACH DGTCACG 75 22 1.5e-008 6.0e-004 # CGTGACT AGTCACG 31 8 1.3e-004 5.0e+000 # CGTGACA TGTCACG 23 6 1.1e-003 4.2e+001 # CGTGACC GGTCACG 23 8 5.1e-003 2.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 77 E= 6.0e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.298701 0.298701 0.000000 0.402597 MOTIF CTYTTC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CTYTTC GAARAG 208 117 2.6e-008 1.0e-003 # CTTTTC GAAAAG 140 84 4.9e-005 1.9e+000 # CTCTTC GAAGAG 81 39 5.1e-005 2.0e+000 letter-probability matrix: alength= 4 w= 6 nsites= 240 E= 1.0e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.375000 0.000000 0.625000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TACYA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST TACYA TRGTA 376 269 3.1e-007 1.2e-002 # TACCA TGGTA 201 142 3.1e-004 1.2e+001 # TACTA TAGTA 201 147 9.5e-004 3.6e+001 letter-probability matrix: alength= 4 w= 5 nsites= 431 E= 1.2e-002 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.487239 0.000000 0.512761 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 40.04 seconds