Invoking:
  getsize meme_out/cbf1_eth/cbf1.eth.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.036303
Invoking:
  fasta-most -min 50 < meme_out/cbf1_eth/cbf1.eth.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.090165
Invoking:
  fasta-center -dna -len 100 < meme_out/cbf1_eth/cbf1.eth.fa 1> meme_out/cbf1_eth/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.120263
Invoking:
  fasta-shuffle-letters meme_out/cbf1_eth/seqs-centered meme_out/cbf1_eth/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.016983
Invoking:
  fasta-subsample meme_out/cbf1_eth/seqs-centered 600 -rest meme_out/cbf1_eth/seqs-discarded -seed 1 1> meme_out/cbf1_eth/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.108453
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 meme_out/cbf1_eth/cbf1.eth.fa meme_out/cbf1_eth/background
Finished invoke:
  name: bg  status: 0  time: 0.226923
Invoking:
  meme meme_out/cbf1_eth/seqs-sampled -oc meme_out/cbf1_eth/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile meme_out/cbf1_eth/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 784.032847
Invoking:
  dreme -v 1 -oc meme_out/cbf1_eth/dreme_out -png -dna -p meme_out/cbf1_eth/seqs-centered -n meme_out/cbf1_eth/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 40.041339
Invoking:
  centrimo -seqlen 150 -verbosity 1 -oc meme_out/cbf1_eth/centrimo_out -bfile meme_out/cbf1_eth/background meme_out/cbf1_eth/cbf1.eth.fa meme_out/cbf1_eth/meme_out/meme.xml meme_out/cbf1_eth/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.255489
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 meme_out/cbf1_eth/combined.meme meme_out/cbf1_eth/combined.meme 1> meme_out/cbf1_eth/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.081825
Invoking:
  spamo -verbosity 1 -oc meme_out/cbf1_eth/spamo_out_1 -bgfile meme_out/cbf1_eth/background -primary RTCACGTG meme_out/cbf1_eth/cbf1.eth.fa meme_out/cbf1_eth/meme_out/meme.xml meme_out/cbf1_eth/meme_out/meme.xml meme_out/cbf1_eth/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 1.051545
Invoking:
  spamo -verbosity 1 -oc meme_out/cbf1_eth/spamo_out_2 -bgfile meme_out/cbf1_eth/background -primary RAARRAAAAAAAAARAARAAA meme_out/cbf1_eth/cbf1.eth.fa meme_out/cbf1_eth/meme_out/meme.xml meme_out/cbf1_eth/meme_out/meme.xml meme_out/cbf1_eth/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.67402
Invoking:
  spamo -verbosity 1 -oc meme_out/cbf1_eth/spamo_out_3 -bgfile meme_out/cbf1_eth/background -primary MARGAA meme_out/cbf1_eth/cbf1.eth.fa meme_out/cbf1_eth/dreme_out/dreme.xml meme_out/cbf1_eth/meme_out/meme.xml meme_out/cbf1_eth/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.851131
Invoking:
  spamo -verbosity 1 -oc meme_out/cbf1_eth/spamo_out_4 -bgfile meme_out/cbf1_eth/background -primary TACYA meme_out/cbf1_eth/cbf1.eth.fa meme_out/cbf1_eth/dreme_out/dreme.xml meme_out/cbf1_eth/meme_out/meme.xml meme_out/cbf1_eth/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.885673
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/cbf1_eth/fimo_out_1 --bgfile meme_out/cbf1_eth/background --motif RTCACGTG meme_out/cbf1_eth/meme_out/meme.xml meme_out/cbf1_eth/cbf1.eth.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.299524
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/cbf1_eth/fimo_out_2 --bgfile meme_out/cbf1_eth/background --motif RAARRAAAAAAAAARAARAAA meme_out/cbf1_eth/meme_out/meme.xml meme_out/cbf1_eth/cbf1.eth.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.342188
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/cbf1_eth/fimo_out_3 --bgfile meme_out/cbf1_eth/background --motif MARGAA meme_out/cbf1_eth/dreme_out/dreme.xml meme_out/cbf1_eth/cbf1.eth.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.200685
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/cbf1_eth/fimo_out_4 --bgfile meme_out/cbf1_eth/background --motif TACYA meme_out/cbf1_eth/dreme_out/dreme.xml meme_out/cbf1_eth/cbf1.eth.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.202363
Writing output
Invoking:
  meme-chip_html_to_tsv meme_out/cbf1_eth/meme-chip.html meme_out/cbf1_eth/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.336574
Done