# DREME 4.12.0 # command: dreme -v 1 -oc meme_out/cbf1_eth/dreme_out -png -dna -p meme_out/cbf1_eth/seqs-centered -n meme_out/cbf1_eth/seqs-shuffled # positives: 1264 from meme_out/cbf1_eth/seqs-centered (Wed May 20 11:58:37 PDT 2020) # negatives: 1264 from meme_out/cbf1_eth/seqs-shuffled (Wed May 20 11:58:37 PDT 2020) # host: nandi.stanford.edu # when: Wed May 20 12:11:47 PDT 2020 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.299 C 0.202 G 0.202 T 0.297 MOTIF CACRTGH DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CACRTGH DCAYGTG 465 61 4.3e-096 1.8e-091 # CACGTGA TCACGTG 215 6 3.7e-060 1.5e-055 # CACGTGC GCACGTG 175 12 5.1e-041 2.1e-036 # CACGTGT ACACGTG 111 7 1.8e-026 7.5e-022 # CACATGA TCATGTG 62 20 1.3e-006 5.3e-002 # CACATGC GCATGTG 37 9 1.7e-005 7.1e-001 # CACATGT ACATGTG 40 17 1.4e-003 5.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 492 E= 1.8e-091 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.284553 0.000000 0.715447 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.467480 0.306911 0.000000 0.225610 MOTIF CGTGAY DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CGTGAY RTCACG 208 60 1.1e-022 4.3e-018 # CGTGAC GTCACG 114 25 8.6e-016 3.4e-011 # CGTGAT ATCACG 97 35 1.4e-008 5.7e-004 letter-probability matrix: alength= 4 w= 6 nsites= 216 E= 4.3e-018 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.541667 0.000000 0.458333 MOTIF MARGAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST MARGAA TTCYTK 527 371 5.5e-011 2.2e-006 # AAGGAA TTCCTT 147 80 1.9e-006 7.6e-002 # AAAGAA TTCTTT 257 196 9.2e-004 3.7e+001 # CAAGAA TTCTTG 140 94 9.8e-004 3.9e+001 # CAGGAA TTCCTG 82 47 1.0e-003 4.0e+001 letter-probability matrix: alength= 4 w= 6 nsites= 680 E= 2.2e-006 0.655882 0.344118 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.650000 0.000000 0.350000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CACCTGAY DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CACCTGAY RTCAGGTG 43 3 1.7e-010 6.6e-006 # CACCTGAC GTCAGGTG 25 1 3.6e-007 1.4e-002 # CACCTGAT ATCAGGTG 18 2 1.9e-004 7.5e+000 letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 6.6e-006 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.581395 0.000000 0.418605 MOTIF TACYA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST TACYA TRGTA 420 302 1.2e-007 4.8e-003 # TACTA TAGTA 226 158 1.0e-004 3.9e+000 # TACCA TGGTA 224 172 2.6e-003 1.0e+002 letter-probability matrix: alength= 4 w= 5 nsites= 483 E= 4.8e-003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.480331 0.000000 0.519669 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 39.51 seconds