# DREME 4.12.0
#     command: dreme -v 1 -oc ../meme_out/cbf1_ana_idr/dreme_out -png -dna -p ../meme_out/cbf1_ana_idr/seqs-centered -n ../meme_out/cbf1_ana_idr/seqs-shuffled
#   positives: 642 from ../meme_out/cbf1_ana_idr/seqs-centered (Wed May 20 14:35:41 PDT 2020)
#   negatives: 642 from ../meme_out/cbf1_ana_idr/seqs-shuffled (Wed May 20 14:35:41 PDT 2020)
#        host: nandi.stanford.edu
#        when: Wed May 20 14:48:40 PDT 2020

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.299 C 0.203 G 0.202 T 0.297


MOTIF BCACGTG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     BCACGTG    CACGTGV        269         14   7.4e-077   2.6e-072
#          TCACGTG    CACGTGA        201         10   5.1e-055   1.8e-050
#          GCACGTG    CACGTGC        144          6   2.5e-039   8.6e-035
#          CCACGTG    CACGTGG         74          5   5.7e-018   2.0e-013

letter-probability matrix: alength= 4 w= 7 nsites= 276 E= 2.6e-072
0.000000 0.181159 0.289855 0.528986
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CATGTGAY DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATGTGAY   RTCACATG         44          5   2.1e-009   7.1e-005
#         CATGTGAT   ATCACATG         22          2   1.5e-005   5.3e-001
#         CATGTGAC   GTCACATG         22          3   6.8e-005   2.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 7.1e-005
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.488889 0.000000 0.511111


MOTIF TTCTTB DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      TTCTTB     VAAGAA        231        137   4.1e-009   1.4e-004
#           TTCTTT     AAAGAA        132         76   1.4e-005   4.9e-001
#           TTCTTC     GAAGAA         77         40   2.2e-004   7.5e+000
#           TTCTTG     CAAGAA         61         37   7.6e-003   2.6e+002

letter-probability matrix: alength= 4 w= 6 nsites= 292 E= 1.4e-004
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.284247 0.222603 0.493151


# Stopping reason: E-value threshold exceeded
#    Running time: 14.82 seconds