Invoking:
  getsize meme_out/cbf1_ana/cbf1.ana.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.0529
Invoking:
  fasta-most -min 50 < meme_out/cbf1_ana/cbf1.ana.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.124864
Invoking:
  fasta-center -dna -len 100 < meme_out/cbf1_ana/cbf1.ana.fa 1> meme_out/cbf1_ana/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.187355
Invoking:
  fasta-shuffle-letters meme_out/cbf1_ana/seqs-centered meme_out/cbf1_ana/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.042864
Invoking:
  fasta-subsample meme_out/cbf1_ana/seqs-centered 600 -rest meme_out/cbf1_ana/seqs-discarded -seed 1 1> meme_out/cbf1_ana/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.115075
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 meme_out/cbf1_ana/cbf1.ana.fa meme_out/cbf1_ana/background
Finished invoke:
  name: bg  status: 0  time: 0.049947
Invoking:
  meme meme_out/cbf1_ana/seqs-sampled -oc meme_out/cbf1_ana/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile meme_out/cbf1_ana/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 724.409319
Invoking:
  dreme -v 1 -oc meme_out/cbf1_ana/dreme_out -png -dna -p meme_out/cbf1_ana/seqs-centered -n meme_out/cbf1_ana/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 17.414599
Invoking:
  centrimo -seqlen 150 -verbosity 1 -oc meme_out/cbf1_ana/centrimo_out -bfile meme_out/cbf1_ana/background meme_out/cbf1_ana/cbf1.ana.fa meme_out/cbf1_ana/meme_out/meme.xml meme_out/cbf1_ana/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.400649
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 meme_out/cbf1_ana/combined.meme meme_out/cbf1_ana/combined.meme 1> meme_out/cbf1_ana/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.160751
Invoking:
  spamo -verbosity 1 -oc meme_out/cbf1_ana/spamo_out_1 -bgfile meme_out/cbf1_ana/background -primary RTCACGTGNWN meme_out/cbf1_ana/cbf1.ana.fa meme_out/cbf1_ana/meme_out/meme.xml meme_out/cbf1_ana/meme_out/meme.xml meme_out/cbf1_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 1.045296
Invoking:
  spamo -verbosity 1 -oc meme_out/cbf1_ana/spamo_out_2 -bgfile meme_out/cbf1_ana/background -primary ADARAAARAWRAAAAAARAAA meme_out/cbf1_ana/cbf1.ana.fa meme_out/cbf1_ana/meme_out/meme.xml meme_out/cbf1_ana/meme_out/meme.xml meme_out/cbf1_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.674647
Invoking:
  spamo -verbosity 1 -oc meme_out/cbf1_ana/spamo_out_3 -bgfile meme_out/cbf1_ana/background -primary CRMRVSSGCMRCHGYBGYBGC meme_out/cbf1_ana/cbf1.ana.fa meme_out/cbf1_ana/meme_out/meme.xml meme_out/cbf1_ana/meme_out/meme.xml meme_out/cbf1_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.503378
Invoking:
  spamo -verbosity 1 -oc meme_out/cbf1_ana/spamo_out_4 -bgfile meme_out/cbf1_ana/background -primary AGARR meme_out/cbf1_ana/cbf1.ana.fa meme_out/cbf1_ana/dreme_out/dreme.xml meme_out/cbf1_ana/meme_out/meme.xml meme_out/cbf1_ana/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.464505
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/cbf1_ana/fimo_out_1 --bgfile meme_out/cbf1_ana/background --motif RTCACGTGNWN meme_out/cbf1_ana/meme_out/meme.xml meme_out/cbf1_ana/cbf1.ana.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.329103
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/cbf1_ana/fimo_out_2 --bgfile meme_out/cbf1_ana/background --motif ADARAAARAWRAAAAAARAAA meme_out/cbf1_ana/meme_out/meme.xml meme_out/cbf1_ana/cbf1.ana.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.288618
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/cbf1_ana/fimo_out_3 --bgfile meme_out/cbf1_ana/background --motif CRMRVSSGCMRCHGYBGYBGC meme_out/cbf1_ana/meme_out/meme.xml meme_out/cbf1_ana/cbf1.ana.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.291044
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc meme_out/cbf1_ana/fimo_out_4 --bgfile meme_out/cbf1_ana/background --motif AGARR meme_out/cbf1_ana/dreme_out/dreme.xml meme_out/cbf1_ana/cbf1.ana.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.125263
Writing output
Invoking:
  meme-chip_html_to_tsv meme_out/cbf1_ana/meme-chip.html meme_out/cbf1_ana/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.727422
Done