# DREME 4.12.0
#     command: dreme -v 1 -oc meme_out/cbf1_ana/dreme_out -png -dna -p meme_out/cbf1_ana/seqs-centered -n meme_out/cbf1_ana/seqs-shuffled
#   positives: 780 from meme_out/cbf1_ana/seqs-centered (Wed May 20 11:36:11 PDT 2020)
#   negatives: 780 from meme_out/cbf1_ana/seqs-shuffled (Wed May 20 11:36:11 PDT 2020)
#        host: nandi.stanford.edu
#        when: Wed May 20 11:48:23 PDT 2020

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.299 C 0.203 G 0.202 T 0.296


MOTIF BCACGTG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     BCACGTG    CACGTGV        294         19   4.6e-078   1.7e-073
#          TCACGTG    CACGTGA        213         12   1.4e-055   5.2e-051
#          GCACGTG    CACGTGC        158          8   4.4e-041   1.6e-036
#          CCACGTG    CACGTGG         84          7   4.8e-019   1.8e-014

letter-probability matrix: alength= 4 w= 7 nsites= 307 E= 1.7e-073
0.000000 0.179153 0.296417 0.524430
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CATGTGAY DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATGTGAY   RTCACATG         52          4   2.6e-012   9.4e-008
#         CATGTGAC   GTCACATG         26          1   1.7e-007   6.2e-003
#         CATGTGAT   ATCACATG         26          3   6.4e-006   2.3e-001

letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 9.4e-008
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.490566 0.000000 0.509434


MOTIF AGARR DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       AGARR      YYTCT        536        423   2.6e-009   9.5e-005
#            AGAAA      TTTCT        318        253   3.8e-004   1.4e+001
#            AGAGG      CCTCT        125         86   2.4e-003   8.7e+001
#            AGAGA      TCTCT        149        111   5.9e-003   2.1e+002
#            AGAAG      CTTCT        194        153   7.4e-003   2.7e+002

letter-probability matrix: alength= 4 w= 5 nsites= 890 E= 9.5e-005
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.712360 0.000000 0.287640 0.000000
0.623596 0.000000 0.376404 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 15.58 seconds