Invoking:
  getsize memeout_fulv/fulv.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.015851
Invoking:
  fasta-most -min 50 < memeout_fulv/fulv.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.072141
Invoking:
  fasta-center -dna -len 100 < memeout_fulv/fulv.fa 1> memeout_fulv/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.081622
Invoking:
  fasta-shuffle-letters memeout_fulv/seqs-centered memeout_fulv/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.022419
Invoking:
  fasta-subsample memeout_fulv/seqs-centered 600 -rest memeout_fulv/seqs-discarded -seed 1 1> memeout_fulv/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.090249
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 memeout_fulv/fulv.fa memeout_fulv/background
Finished invoke:
  name: bg  status: 0  time: 0.017398
Invoking:
  meme memeout_fulv/seqs-sampled -oc memeout_fulv/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile memeout_fulv/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 639.126229
Invoking:
  dreme -v 1 -oc memeout_fulv/dreme_out -png -dna -p memeout_fulv/seqs-centered -n memeout_fulv/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 70.976775
Invoking:
  centrimo -seqlen 136 -verbosity 1 -oc memeout_fulv/centrimo_out -bfile memeout_fulv/background memeout_fulv/fulv.fa memeout_fulv/meme_out/meme.xml memeout_fulv/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.394149
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 memeout_fulv/combined.meme memeout_fulv/combined.meme 1> memeout_fulv/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.399978
Invoking:
  spamo -verbosity 1 -oc memeout_fulv/spamo_out_1 -bgfile memeout_fulv/background -primary AGGTCANGSTGACCT memeout_fulv/fulv.fa memeout_fulv/meme_out/meme.xml memeout_fulv/meme_out/meme.xml memeout_fulv/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.480004
Invoking:
  spamo -verbosity 1 -oc memeout_fulv/spamo_out_2 -bgfile memeout_fulv/background -primary RYAAAYA memeout_fulv/fulv.fa memeout_fulv/dreme_out/dreme.xml memeout_fulv/meme_out/meme.xml memeout_fulv/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.302336
Invoking:
  spamo -verbosity 1 -oc memeout_fulv/spamo_out_3 -bgfile memeout_fulv/background -primary HATGTCA memeout_fulv/fulv.fa memeout_fulv/dreme_out/dreme.xml memeout_fulv/meme_out/meme.xml memeout_fulv/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.312152
Invoking:
  spamo -verbosity 1 -oc memeout_fulv/spamo_out_4 -bgfile memeout_fulv/background -primary AGATA memeout_fulv/fulv.fa memeout_fulv/dreme_out/dreme.xml memeout_fulv/meme_out/meme.xml memeout_fulv/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.281203
Invoking:
  spamo -verbosity 1 -oc memeout_fulv/spamo_out_5 -bgfile memeout_fulv/background -primary AGGGCR memeout_fulv/fulv.fa memeout_fulv/dreme_out/dreme.xml memeout_fulv/meme_out/meme.xml memeout_fulv/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.299031
Invoking:
  spamo -verbosity 1 -oc memeout_fulv/spamo_out_6 -bgfile memeout_fulv/background -primary AHARGATGASATAGRAGGTMRVCACAAGA memeout_fulv/fulv.fa memeout_fulv/meme_out/meme.xml memeout_fulv/meme_out/meme.xml memeout_fulv/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.421139
Invoking:
  spamo -verbosity 1 -oc memeout_fulv/spamo_out_7 -bgfile memeout_fulv/background -primary GATSRYRCCACTGCASTCCAGCCTGGGTG memeout_fulv/fulv.fa memeout_fulv/meme_out/meme.xml memeout_fulv/meme_out/meme.xml memeout_fulv/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.442124
Invoking:
  spamo -verbosity 1 -oc memeout_fulv/spamo_out_8 -bgfile memeout_fulv/background -primary AGGTKRC memeout_fulv/fulv.fa memeout_fulv/dreme_out/dreme.xml memeout_fulv/meme_out/meme.xml memeout_fulv/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.286468
Invoking:
  spamo -verbosity 1 -oc memeout_fulv/spamo_out_9 -bgfile memeout_fulv/background -primary CWTTCC memeout_fulv/fulv.fa memeout_fulv/dreme_out/dreme.xml memeout_fulv/meme_out/meme.xml memeout_fulv/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.30381
Invoking:
  spamo -verbosity 1 -oc memeout_fulv/spamo_out_10 -bgfile memeout_fulv/background -primary AGGTCGK memeout_fulv/fulv.fa memeout_fulv/dreme_out/dreme.xml memeout_fulv/meme_out/meme.xml memeout_fulv/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.2904
Invoking:
  spamo -verbosity 1 -oc memeout_fulv/spamo_out_11 -bgfile memeout_fulv/background -primary TGATAAAA memeout_fulv/fulv.fa memeout_fulv/dreme_out/dreme.xml memeout_fulv/meme_out/meme.xml memeout_fulv/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.276696
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_fulv/fimo_out_1 --bgfile memeout_fulv/background --motif AGGTCANGSTGACCT memeout_fulv/meme_out/meme.xml memeout_fulv/fulv.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.287054
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_fulv/fimo_out_2 --bgfile memeout_fulv/background --motif RYAAAYA memeout_fulv/dreme_out/dreme.xml memeout_fulv/fulv.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.134001
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_fulv/fimo_out_3 --bgfile memeout_fulv/background --motif HATGTCA memeout_fulv/dreme_out/dreme.xml memeout_fulv/fulv.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.136812
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_fulv/fimo_out_4 --bgfile memeout_fulv/background --motif AGATA memeout_fulv/dreme_out/dreme.xml memeout_fulv/fulv.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.118221
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_fulv/fimo_out_5 --bgfile memeout_fulv/background --motif AGGGCR memeout_fulv/dreme_out/dreme.xml memeout_fulv/fulv.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.119125
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_fulv/fimo_out_6 --bgfile memeout_fulv/background --motif AHARGATGASATAGRAGGTMRVCACAAGA memeout_fulv/meme_out/meme.xml memeout_fulv/fulv.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.269382
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_fulv/fimo_out_7 --bgfile memeout_fulv/background --motif GATSRYRCCACTGCASTCCAGCCTGGGTG memeout_fulv/meme_out/meme.xml memeout_fulv/fulv.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.288306
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_fulv/fimo_out_8 --bgfile memeout_fulv/background --motif AGGTKRC memeout_fulv/dreme_out/dreme.xml memeout_fulv/fulv.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.133029
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_fulv/fimo_out_9 --bgfile memeout_fulv/background --motif CWTTCC memeout_fulv/dreme_out/dreme.xml memeout_fulv/fulv.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.116422
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_fulv/fimo_out_10 --bgfile memeout_fulv/background --motif AGGTCGK memeout_fulv/dreme_out/dreme.xml memeout_fulv/fulv.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.136837
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_fulv/fimo_out_11 --bgfile memeout_fulv/background --motif TGATAAAA memeout_fulv/dreme_out/dreme.xml memeout_fulv/fulv.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.137348
Writing output
Invoking:
  meme-chip_html_to_tsv memeout_fulv/meme-chip.html memeout_fulv/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.268058
Done