# DREME 4.12.0 # command: dreme -v 1 -oc memeout_fulv/dreme_out -png -dna -p memeout_fulv/seqs-centered -n memeout_fulv/seqs-shuffled # positives: 1453 from memeout_fulv/seqs-centered (Thu Nov 05 03:00:44 PST 2020) # negatives: 1453 from memeout_fulv/seqs-shuffled (Thu Nov 05 03:00:44 PST 2020) # host: surya.stanford.edu # when: Thu Nov 05 03:11:24 PST 2020 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.266 C 0.231 G 0.235 T 0.267 MOTIF TGACCB DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TGACCB VGGTCA 986 207 6.2e-202 2.3e-197 # TGACCT AGGTCA 748 122 3.3e-153 1.2e-148 # TGACCC GGGTCA 346 79 1.8e-047 6.9e-043 # TGACCG CGGTCA 62 19 6.4e-007 2.4e-002 letter-probability matrix: alength= 4 w= 6 nsites= 1386 E= 2.3e-197 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.275613 0.046898 0.677489 MOTIF RYAAAYA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST RYAAAYA TRTTTRY 447 147 6.5e-045 2.4e-040 # GTAAATA TATTTAC 68 6 5.5e-015 2.0e-010 # GTAAACA TGTTTAC 87 22 5.9e-011 2.1e-006 # GCAAATA TATTTGC 60 11 8.7e-010 3.1e-005 # ACAAACA TGTTTGT 99 38 4.8e-008 1.7e-003 # GCAAACA TGTTTGC 94 38 3.4e-007 1.2e-002 # ATAAACA TGTTTAT 59 17 5.1e-007 1.8e-002 # ACAAATA TATTTGT 56 20 1.7e-005 6.3e-001 # ATAAATA TATTTAT 30 11 2.0e-003 7.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 550 E= 2.4e-040 0.421818 0.000000 0.578182 0.000000 0.000000 0.558182 0.000000 0.441818 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.630909 0.000000 0.369091 1.000000 0.000000 0.000000 0.000000 MOTIF HATGTCA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST HATGTCA TGACATD 252 62 1.2e-031 4.3e-027 # AATGTCA TGACATT 126 22 4.6e-020 1.6e-015 # TATGTCA TGACATA 56 9 7.0e-010 2.5e-005 # CATGTCA TGACATG 87 32 1.4e-007 4.9e-003 letter-probability matrix: alength= 4 w= 7 nsites= 276 E= 4.3e-027 0.478261 0.315217 0.000000 0.206522 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGATA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AGATA TATCT 391 189 2.5e-021 9.0e-017 # AGATA TATCT 391 189 2.5e-021 9.0e-017 letter-probability matrix: alength= 4 w= 5 nsites= 440 E= 9.0e-017 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGGGCR DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AGGGCR YGCCCT 298 130 4.7e-019 1.7e-014 # AGGGCA TGCCCT 270 111 6.9e-019 2.4e-014 # AGGGCG CGCCCT 40 21 9.6e-003 3.3e+002 letter-probability matrix: alength= 4 w= 6 nsites= 348 E= 1.7e-014 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.879310 0.000000 0.120690 0.000000 MOTIF AGGTKRC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AGGTKRC GYMACCT 129 56 1.5e-008 5.3e-004 # AGGTTAC GTAACCT 27 9 1.9e-003 6.4e+001 # AGGTGGC GCCACCT 30 11 2.0e-003 7.0e+001 # AGGTGAC GTCACCT 40 18 2.5e-003 8.5e+001 # AGGTTGC GCAACCT 36 18 9.4e-003 3.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 136 E= 5.3e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.522059 0.477941 0.514706 0.000000 0.485294 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CWTTCC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CWTTCC GGAAWG 235 140 8.7e-008 3.0e-003 # CATTCC GGAATG 121 73 2.3e-004 7.8e+000 # CTTTCC GGAAAG 121 74 3.1e-004 1.1e+001 letter-probability matrix: alength= 4 w= 6 nsites= 252 E= 3.0e-003 0.000000 1.000000 0.000000 0.000000 0.507937 0.000000 0.000000 0.492063 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGGTCGK DREME-8 # Word RC Word Pos Neg P-value E-value # BEST AGGTCGK MCGACCT 42 8 4.8e-007 1.6e-002 # AGGTCGT ACGACCT 25 5 1.5e-004 5.2e+000 # AGGTCGG CCGACCT 17 3 1.2e-003 4.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 44 E= 1.6e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.431818 0.568182 MOTIF GATGACM DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GATGACM KGTCATC 59 17 5.1e-007 1.8e-002 # GATGACC GGTCATC 20 3 2.3e-004 8.0e+000 # GATGACA TGTCATC 39 14 3.6e-004 1.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 61 E= 1.8e-002 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.639344 0.360656 0.000000 0.000000 MOTIF TGATAAAA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST TGATAAAA TTTTATCA 24 1 7.1e-007 2.4e-002 # TGATAAAA TTTTATCA 24 1 7.1e-007 2.4e-002 letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.4e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 70.55 seconds