Invoking:
  getsize memeout_e2/e2.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.059502
Invoking:
  fasta-most -min 50 < memeout_e2/e2.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.117794
Invoking:
  fasta-center -dna -len 100 < memeout_e2/e2.fa 1> memeout_e2/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.147325
Invoking:
  fasta-shuffle-letters memeout_e2/seqs-centered memeout_e2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.074463
Invoking:
  fasta-subsample memeout_e2/seqs-centered 600 -rest memeout_e2/seqs-discarded -seed 1 1> memeout_e2/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.177824
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 memeout_e2/e2.fa memeout_e2/background
Finished invoke:
  name: bg  status: 0  time: 0.05604
Invoking:
  meme memeout_e2/seqs-sampled -oc memeout_e2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile memeout_e2/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 655.394809
Invoking:
  dreme -v 1 -oc memeout_e2/dreme_out -png -dna -p memeout_e2/seqs-centered -n memeout_e2/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 644.6582
Invoking:
  centrimo -seqlen 179 -verbosity 1 -oc memeout_e2/centrimo_out -bfile memeout_e2/background memeout_e2/e2.fa memeout_e2/meme_out/meme.xml memeout_e2/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.306608
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 memeout_e2/combined.meme memeout_e2/combined.meme 1> memeout_e2/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.442437
Invoking:
  spamo -verbosity 1 -oc memeout_e2/spamo_out_1 -bgfile memeout_e2/background -primary TGACCB memeout_e2/e2.fa memeout_e2/dreme_out/dreme.xml memeout_e2/meme_out/meme.xml memeout_e2/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.847215
Invoking:
  spamo -verbosity 1 -oc memeout_e2/spamo_out_2 -bgfile memeout_e2/background -primary HGATAA memeout_e2/e2.fa memeout_e2/dreme_out/dreme.xml memeout_e2/meme_out/meme.xml memeout_e2/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.54563
Invoking:
  spamo -verbosity 1 -oc memeout_e2/spamo_out_3 -bgfile memeout_e2/background -primary GATCRYGCCACTGCACTCCAGCCTGGGTGA memeout_e2/e2.fa memeout_e2/meme_out/meme.xml memeout_e2/meme_out/meme.xml memeout_e2/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.494202
Invoking:
  spamo -verbosity 1 -oc memeout_e2/spamo_out_4 -bgfile memeout_e2/background -primary RTAAAYA memeout_e2/e2.fa memeout_e2/dreme_out/dreme.xml memeout_e2/meme_out/meme.xml memeout_e2/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.495845
Invoking:
  spamo -verbosity 1 -oc memeout_e2/spamo_out_5 -bgfile memeout_e2/background -primary CCTGGS memeout_e2/e2.fa memeout_e2/dreme_out/dreme.xml memeout_e2/meme_out/meme.xml memeout_e2/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.814209
Invoking:
  spamo -verbosity 1 -oc memeout_e2/spamo_out_6 -bgfile memeout_e2/background -primary AAAGMCCT memeout_e2/e2.fa memeout_e2/dreme_out/dreme.xml memeout_e2/meme_out/meme.xml memeout_e2/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.37741
Invoking:
  spamo -verbosity 1 -oc memeout_e2/spamo_out_7 -bgfile memeout_e2/background -primary ATCTMATC memeout_e2/e2.fa memeout_e2/dreme_out/dreme.xml memeout_e2/meme_out/meme.xml memeout_e2/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.385112
Invoking:
  spamo -verbosity 1 -oc memeout_e2/spamo_out_8 -bgfile memeout_e2/background -primary CBGTGAC memeout_e2/e2.fa memeout_e2/dreme_out/dreme.xml memeout_e2/meme_out/meme.xml memeout_e2/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.528774
Invoking:
  spamo -verbosity 1 -oc memeout_e2/spamo_out_9 -bgfile memeout_e2/background -primary ACAARATA memeout_e2/e2.fa memeout_e2/dreme_out/dreme.xml memeout_e2/meme_out/meme.xml memeout_e2/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.374558
Invoking:
  spamo -verbosity 1 -oc memeout_e2/spamo_out_10 -bgfile memeout_e2/background -primary AGGTTGCA memeout_e2/e2.fa memeout_e2/dreme_out/dreme.xml memeout_e2/meme_out/meme.xml memeout_e2/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.388946
Invoking:
  spamo -verbosity 1 -oc memeout_e2/spamo_out_11 -bgfile memeout_e2/background -primary CHGGGGCA memeout_e2/e2.fa memeout_e2/dreme_out/dreme.xml memeout_e2/meme_out/meme.xml memeout_e2/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.488546
Invoking:
  spamo -verbosity 1 -oc memeout_e2/spamo_out_12 -bgfile memeout_e2/background -primary CGTGTCM memeout_e2/e2.fa memeout_e2/dreme_out/dreme.xml memeout_e2/meme_out/meme.xml memeout_e2/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.40297
Invoking:
  spamo -verbosity 1 -oc memeout_e2/spamo_out_13 -bgfile memeout_e2/background -primary CCTDAGGC memeout_e2/e2.fa memeout_e2/dreme_out/dreme.xml memeout_e2/meme_out/meme.xml memeout_e2/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.456612
Invoking:
  spamo -verbosity 1 -oc memeout_e2/spamo_out_14 -bgfile memeout_e2/background -primary CCTGCCTY memeout_e2/e2.fa memeout_e2/dreme_out/dreme.xml memeout_e2/meme_out/meme.xml memeout_e2/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.420834
Invoking:
  spamo -verbosity 1 -oc memeout_e2/spamo_out_15 -bgfile memeout_e2/background -primary CTGTAMTC memeout_e2/e2.fa memeout_e2/dreme_out/dreme.xml memeout_e2/meme_out/meme.xml memeout_e2/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.360349
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_e2/fimo_out_1 --bgfile memeout_e2/background --motif TGACCB memeout_e2/dreme_out/dreme.xml memeout_e2/e2.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.377222
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_e2/fimo_out_2 --bgfile memeout_e2/background --motif HGATAA memeout_e2/dreme_out/dreme.xml memeout_e2/e2.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.377454
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_e2/fimo_out_3 --bgfile memeout_e2/background --motif GATCRYGCCACTGCACTCCAGCCTGGGTGA memeout_e2/meme_out/meme.xml memeout_e2/e2.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.576495
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_e2/fimo_out_4 --bgfile memeout_e2/background --motif RTAAAYA memeout_e2/dreme_out/dreme.xml memeout_e2/e2.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.438731
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_e2/fimo_out_5 --bgfile memeout_e2/background --motif CCTGGS memeout_e2/dreme_out/dreme.xml memeout_e2/e2.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.37722
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_e2/fimo_out_6 --bgfile memeout_e2/background --motif AAAGMCCT memeout_e2/dreme_out/dreme.xml memeout_e2/e2.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.397869
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_e2/fimo_out_7 --bgfile memeout_e2/background --motif ATCTMATC memeout_e2/dreme_out/dreme.xml memeout_e2/e2.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.399474
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_e2/fimo_out_8 --bgfile memeout_e2/background --motif CBGTGAC memeout_e2/dreme_out/dreme.xml memeout_e2/e2.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.363866
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_e2/fimo_out_9 --bgfile memeout_e2/background --motif ACAARATA memeout_e2/dreme_out/dreme.xml memeout_e2/e2.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.363341
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_e2/fimo_out_10 --bgfile memeout_e2/background --motif AGGTTGCA memeout_e2/dreme_out/dreme.xml memeout_e2/e2.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.352402
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_e2/fimo_out_11 --bgfile memeout_e2/background --motif CHGGGGCA memeout_e2/dreme_out/dreme.xml memeout_e2/e2.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.407256
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_e2/fimo_out_12 --bgfile memeout_e2/background --motif CGTGTCM memeout_e2/dreme_out/dreme.xml memeout_e2/e2.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.358365
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_e2/fimo_out_13 --bgfile memeout_e2/background --motif CCTDAGGC memeout_e2/dreme_out/dreme.xml memeout_e2/e2.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.366263
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_e2/fimo_out_14 --bgfile memeout_e2/background --motif CCTGCCTY memeout_e2/dreme_out/dreme.xml memeout_e2/e2.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.413235
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memeout_e2/fimo_out_15 --bgfile memeout_e2/background --motif CTGTAMTC memeout_e2/dreme_out/dreme.xml memeout_e2/e2.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.402322
Writing output
Invoking:
  meme-chip_html_to_tsv memeout_e2/meme-chip.html memeout_e2/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.163802
Done