******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= seqnotcut_memechip_out/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:85061603-85061703 1.0000 100 chr20:42753108-42753208 1.0000 100 chr6:8279591-8279691 1.0000 100 chr16:64614584-64614684 1.0000 100 chr2:714363-714463 1.0000 100 chr10:103891961-10389206 1.0000 100 chr12:66324308-66324408 1.0000 100 chrX:15834711-15834811 1.0000 100 chr5:38660428-38660528 1.0000 100 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chr11:111207356-11120745 1.0000 100 chrX:153092597-153092697 1.0000 100 chr5:60867247-60867347 1.0000 100 chr19:53811790-53811890 1.0000 100 chr11:59295345-59295445 1.0000 100 chr10:50776329-50776429 1.0000 100 chr13:30424592-30424692 1.0000 100 chr21:44843336-44843436 1.0000 100 chr7:136794742-136794842 1.0000 100 chr1:218784833-218784933 1.0000 100 chr1:23155324-23155424 1.0000 100 chr1:70687352-70687452 1.0000 100 chr5:77372180-77372280 1.0000 100 chr18:45915764-45915864 1.0000 100 chr17:47903011-47903111 1.0000 100 chr11:126872506-12687260 1.0000 100 chr9:102622872-102622972 1.0000 100 chr12:57618331-57618431 1.0000 100 chr8:48436500-48436600 1.0000 100 chr3:183501341-183501441 1.0000 100 chr16:71071327-71071427 1.0000 100 chr11:84898008-84898108 1.0000 100 chr2:173419240-173419340 1.0000 100 chr9:35203614-35203714 1.0000 100 chr20:36487892-36487992 1.0000 100 chr12:10087857-10087957 1.0000 100 chr22:20918581-20918681 1.0000 100 chr7:55304872-55304972 1.0000 100 chr4:103221146-103221246 1.0000 100 chr1:160800287-160800387 1.0000 100 chr15:40543141-40543241 1.0000 100 chr7:30767308-30767408 1.0000 100 chr6:138529936-138530036 1.0000 100 chr3:182103174-182103274 1.0000 100 chr1:197237174-197237274 1.0000 100 chr3:186511231-186511331 1.0000 100 chr7:111514223-111514323 1.0000 100 chr7:33719315-33719415 1.0000 100 chr8:139444245-139444345 1.0000 100 chr7:83097467-83097567 1.0000 100 chr15:38662163-38662263 1.0000 100 chr3:27917963-27918063 1.0000 100 chr14:30825535-30825635 1.0000 100 chr18:7923242-7923342 1.0000 100 chr1:10004321-10004421 1.0000 100 chr14:23039190-23039290 1.0000 100 chr6:13544800-13544900 1.0000 100 chr5:38620156-38620256 1.0000 100 chr2:9215048-9215148 1.0000 100 chr22:33446798-33446898 1.0000 100 chr17:49359334-49359434 1.0000 100 chr1:53935886-53935986 1.0000 100 chr6:24667084-24667184 1.0000 100 chr20:35113099-35113199 1.0000 100 chr6:47065212-47065312 1.0000 100 chr13:95477936-95478036 1.0000 100 chr5:54743363-54743463 1.0000 100 chr10:133148633-13314873 1.0000 100 chr15:50329506-50329606 1.0000 100 chr9:103200260-103200360 1.0000 100 chr11:64845717-64845817 1.0000 100 chr10:121577644-12157774 1.0000 100 chr2:106686791-106686891 1.0000 100 chr5:121021121-121021221 1.0000 100 chr20:7621000-7621100 1.0000 100 chr13:30911130-30911230 1.0000 100 chr5:123423664-123423764 1.0000 100 chr1:114521396-114521496 1.0000 100 chr2:108721921-108722021 1.0000 100 chr5:75440802-75440902 1.0000 100 chr11:113770349-11377044 1.0000 100 chr11:134334090-13433419 1.0000 100 chr14:67579260-67579360 1.0000 100 chr18:62487965-62488065 1.0000 100 chr18:22127357-22127457 1.0000 100 chr11:112461632-11246173 1.0000 100 chr2:20512019-20512119 1.0000 100 chr12:20491413-20491513 1.0000 100 chr4:95938655-95938755 1.0000 100 chr19:36883161-36883261 1.0000 100 chr7:155074316-155074416 1.0000 100 chr5:44389404-44389504 1.0000 100 chr2:143231578-143231678 1.0000 100 chr13:78249017-78249117 1.0000 100 chr5:27472443-27472543 1.0000 100 chr2:140261500-140261600 1.0000 100 chr2:181544492-181544592 1.0000 100 chr6:104097842-104097942 1.0000 100 chr5:120216122-120216222 1.0000 100 chr12:80149368-80149468 1.0000 100 chr11:129161529-12916162 1.0000 100 chr21:45909974-45910074 1.0000 100 chr17:8130222-8130322 1.0000 100 chr4:77891612-77891712 1.0000 100 chr7:39180239-39180339 1.0000 100 chr5:150984533-150984633 1.0000 100 chr9:108800648-108800748 1.0000 100 chr12:67868983-67869083 1.0000 100 chrX:39670747-39670847 1.0000 100 chr12:95189486-95189586 1.0000 100 chr22:35010309-35010409 1.0000 100 chr8:26598589-26598689 1.0000 100 chr5:143988991-143989091 1.0000 100 chr10:24336267-24336367 1.0000 100 chr20:22436869-22436969 1.0000 100 chr9:20980974-20981074 1.0000 100 chr14:23340233-23340333 1.0000 100 chr14:59677151-59677251 1.0000 100 chr2:176867074-176867174 1.0000 100 chr21:20263754-20263854 1.0000 100 chr4:91246205-91246305 1.0000 100 chr17:64536642-64536742 1.0000 100 chr1:100598613-100598713 1.0000 100 chr2:229161867-229161967 1.0000 100 chr17:37730144-37730244 1.0000 100 chr14:25148176-25148276 1.0000 100 chr14:65039935-65040035 1.0000 100 chr12:106975415-10697551 1.0000 100 chr10:114895004-11489510 1.0000 100 chr11:114842954-11484305 1.0000 100 chr14:65450172-65450272 1.0000 100 chr6:1256203-1256303 1.0000 100 chr3:122217045-122217145 1.0000 100 chr13:22274414-22274514 1.0000 100 chr10:16197975-16198075 1.0000 100 chr1:246246956-246247056 1.0000 100 chr5:51922619-51922719 1.0000 100 chr5:33807259-33807359 1.0000 100 chr2:192186290-192186390 1.0000 100 chr20:33754479-33754579 1.0000 100 chr10:10673071-10673171 1.0000 100 chr17:49759751-49759851 1.0000 100 chr6:70484959-70485059 1.0000 100 chr18:8216816-8216916 1.0000 100 chr12:63053210-63053310 1.0000 100 chr12:22144598-22144698 1.0000 100 chr1:245419944-245420044 1.0000 100 chr3:78479101-78479201 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme seqnotcut_memechip_out/seqs-sampled -oc seqnotcut_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile seqnotcut_memechip_out/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.273 C 0.227 G 0.227 T 0.273 Background letter frequencies (from seqnotcut_memechip_out/background): A 0.277 C 0.223 G 0.223 T 0.277 ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAYAMAMAMAMAAAWA MEME-1 width = 21 sites = 50 llr = 586 E-value = 1.0e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAYAMAMAMAMAAAWA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 8786a69266a4947587857 pos.-specific C 2212:1:4:3:413131111: probability G ::21::1:1::::2:21:111 matrix T :1:2:3:421:21121:2:31 bits 2.2 1.9 * 1.7 * * 1.5 * * * Relative 1.3 * * * * * Entropy 1.1 * * * * * * * * (16.9 bits) 0.9 *** * * * * * * 0.6 *** *** *** * * *** * 0.4 *** ******* * * *** * 0.2 ********************* 0.0 --------------------- Multilevel AAAAAAATAAAAAAAAAAAAA consensus T CTC C C C T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAYAMAMAMAMAAAWA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr18:45915764-45915864 - 15 1.84e-10 CTTTAAATGC AAAAAAAAAAAAAAAAAAAAA TCCAAGAGTC chr7:105416881-105416981 + 16 1.84e-10 ccccccccca aaacaaacaaacaaacaaaaa acaGTATATT chr14:57175649-57175749 + 10 2.48e-10 GATTCTGCC AAAAAAATTCACACAAAAAAA TTTGATCCCA chr17:8130222-8130322 + 2 4.31e-09 A AACAAAACACACACAAAAAAA AGCCACCCAC chr12:22144598-22144698 + 56 6.10e-09 AGCAAAAGTT AAAAAAAAAAAAAAAAAAGAA GGTTAAGAAC chr6:14306636-14306736 - 10 1.36e-08 AGAGAAGAAA AAACATATGAAAAAAAAAAAA GACTGGCCA chr20:36487892-36487992 - 64 1.86e-08 TCCACATATA AAAAAAGCTAAAAAAAAAAAA AACAAGCTGA chr9:16516111-16516211 - 61 3.90e-08 GTAGGACTGA AAAAAAACAAACAAACCAAGA ACAACACAAA chr6:8279591-8279691 - 46 5.90e-08 TCTGCTATGG AAGGAAAAAAAAAAACAAAAA CCTGTGAGAA chr12:80149368-80149468 + 1 7.70e-08 . aaaaaaaaaaaaaaaaaacca gtttgctgtg chr17:54885184-54885284 + 30 1.30e-07 aataaataat aaataaataaataaataaata aataaataaa chr21:31594988-31595088 + 23 1.47e-07 Gcacacacac acacatacacacacacacaAA ATGTCCTTAT chr18:62487965-62488065 - 39 2.39e-07 AATTCCTCAA CAAAATACTAACAGACAAAAT CCAGCAAAAT chr10:59583131-59583231 - 30 2.39e-07 GCTGCCATTA AAACAAATTAACTGACAAAAA ATGTTTGGCA chr4:24473994-24474094 + 68 3.03e-07 AGGAAAGAAA AAAAAAGCACACATACACAAA AGCAACCCAA chr1:112247740-112247840 + 57 3.03e-07 TAAGCCTTTT AAAAAAATAAAAACAACAGAG TGGGCTTCTT chrX:9141507-9141607 + 11 3.03e-07 agcaattgtg acaaaaacaaaaattaacaaa tgggacctaa chr8:89100084-89100184 + 53 4.26e-07 ccaaacaaac aaaaaaaTGtacatacatata tatctatatc chr1:10004321-10004421 + 65 4.77e-07 accctcataa caaaaaattaaaaatAAAATT ACCCAGAAAC chr2:225523546-225523646 - 77 4.77e-07 TTG CAAAACATTCACACACAAACA CACATTGGCC chr16:74070454-74070554 - 77 4.77e-07 GGA AAAAAAATTAAAACCAAAACT GCCCTAAGGA chr1:47956592-47956692 + 13 5.33e-07 agatgaacaa ctaaaaataaaaagtaaaata taggatggca chr2:173500297-173500397 - 1 8.19e-07 CCAGAGCATC AAGAATACAAAAAACAGAAAA chr2:84363614-84363714 - 28 9.09e-07 TAGACCATTA AAAAAGACACATAGAGAAATA AAAGGGCTTT chr19:55641586-55641686 + 7 1.12e-06 aaatta aaacaaaaaaagaaaGAAAGA AAAAGAAAAT chr5:152338096-152338196 + 62 1.12e-06 tccaagctgg aacaatatgaacagtaaaata aatgattaag chr7:17679406-17679506 + 60 1.12e-06 CCATTTAATG ACAAATACTCAACCAGAAAAA AAAAAAAAGT chr6:166555839-166555939 - 75 1.12e-06 AAACA AACAACACAAACAAAACAAAA CAAAACTTAA chr22:46234527-46234627 - 71 2.01e-06 TTGAGTAGA AAATAAAAACACTGTAAAATA TAGCCCTAGG chr7:81652299-81652399 - 78 3.82e-06 CC AAACAAATGAATAAAGGAAAG TAAAACCAGA chr22:33446798-33446898 + 28 4.17e-06 tcggatgatg aaataaattaaaacccgtata aagcacccag chr1:91748463-91748563 - 66 4.55e-06 TGCTAGTGTT CTATAAACAAACAAACAAAAC TTGCATACAG chr3:60862348-60862448 + 51 4.96e-06 agtgacagcc aaaacaatgaataaacaacta cactttaatg chr12:87341898-87341998 - 40 4.96e-06 AGAATCATGG CAAGATATATACACACATGAA TGCATGTTAA chr1:19233552-19233652 + 68 5.40e-06 AGTAGGCTTA AAAAATAATAATAAAGCAAAG CCTGCTCAGC chrX:24109077-24109177 - 18 6.94e-06 TCTCCATAAC AAAAAAGTACAAAGTGAACCA GCAAGTGCTG chr8:54233164-54233264 + 34 7.53e-06 actgctcaaa caaaatatttataaacataga taactacaat chr10:4719599-4719699 + 11 8.17e-06 TCACAGAGAT ATGAAAACACATCATAAAAAA ATCTATCGTT chr3:78479101-78479201 - 19 9.57e-06 AATTTTCCAG AAGGCAATACAAAGAGATAAA CAGATGATTA chr5:125233666-125233766 + 52 1.04e-05 CAAGTGGAGG AAAAAAGCAAAGACAGGAAAT GAATTTCCCT chr2:64142930-64143030 + 69 1.21e-05 aaattagaag acatatacataaataaacaat tctattatac chr1:23155324-23155424 + 53 1.30e-05 TAGACTGTTA CAGTAAACACACACGCATAGA ATATTCACTT chr2:20450081-20450181 + 2 1.51e-05 G ACGTAAATGTACACTAAAATG CAAATGTATC chr12:69332825-69332925 - 19 1.63e-05 AGATATATGT ACATATATACATACATATATG TATGTAGTAA chr5:33807259-33807359 + 25 1.75e-05 TAGtcatttt acagataaaaaaactaaagtt cagagaaagg chr1:13876006-13876106 - 6 1.75e-05 TTGAGGGAGG ACAAATAAAAACCCAAATCCA ATCCC chr5:31637533-31637633 - 52 3.06e-05 TGCTGAATCA ATGAATATGCAAATAAATGTA TCACTCAAAC chr9:90149258-90149358 - 43 3.06e-05 TAATAACTCA AAATAAACTCAATGGAAAGTA AACATCTATG chr5:123423664-123423764 + 48 3.97e-05 TTCTCGACTA ACACACACACACACCCACACG AGAAAATGGT chr2:168878393-168878493 + 35 6.11e-05 ATGCATGTAC CAGCAAATATACATATATATT GAatacagat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAYAMAMAMAMAAAWA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:45915764-45915864 1.8e-10 14_[-1]_65 chr7:105416881-105416981 1.8e-10 15_[+1]_64 chr14:57175649-57175749 2.5e-10 9_[+1]_70 chr17:8130222-8130322 4.3e-09 1_[+1]_78 chr12:22144598-22144698 6.1e-09 55_[+1]_24 chr6:14306636-14306736 1.4e-08 9_[-1]_70 chr20:36487892-36487992 1.9e-08 63_[-1]_16 chr9:16516111-16516211 3.9e-08 60_[-1]_19 chr6:8279591-8279691 5.9e-08 45_[-1]_34 chr12:80149368-80149468 7.7e-08 [+1]_79 chr17:54885184-54885284 1.3e-07 29_[+1]_50 chr21:31594988-31595088 1.5e-07 22_[+1]_57 chr18:62487965-62488065 2.4e-07 38_[-1]_41 chr10:59583131-59583231 2.4e-07 29_[-1]_50 chr4:24473994-24474094 3e-07 67_[+1]_12 chr1:112247740-112247840 3e-07 56_[+1]_23 chrX:9141507-9141607 3e-07 10_[+1]_69 chr8:89100084-89100184 4.3e-07 52_[+1]_27 chr1:10004321-10004421 4.8e-07 64_[+1]_15 chr2:225523546-225523646 4.8e-07 76_[-1]_3 chr16:74070454-74070554 4.8e-07 76_[-1]_3 chr1:47956592-47956692 5.3e-07 12_[+1]_67 chr2:173500297-173500397 8.2e-07 [-1]_79 chr2:84363614-84363714 9.1e-07 27_[-1]_52 chr19:55641586-55641686 1.1e-06 6_[+1]_73 chr5:152338096-152338196 1.1e-06 61_[+1]_18 chr7:17679406-17679506 1.1e-06 59_[+1]_20 chr6:166555839-166555939 1.1e-06 74_[-1]_5 chr22:46234527-46234627 2e-06 70_[-1]_9 chr7:81652299-81652399 3.8e-06 77_[-1]_2 chr22:33446798-33446898 4.2e-06 27_[+1]_52 chr1:91748463-91748563 4.6e-06 65_[-1]_14 chr3:60862348-60862448 5e-06 50_[+1]_29 chr12:87341898-87341998 5e-06 39_[-1]_40 chr1:19233552-19233652 5.4e-06 67_[+1]_12 chrX:24109077-24109177 6.9e-06 17_[-1]_62 chr8:54233164-54233264 7.5e-06 33_[+1]_46 chr10:4719599-4719699 8.2e-06 10_[+1]_69 chr3:78479101-78479201 9.6e-06 18_[-1]_61 chr5:125233666-125233766 1e-05 51_[+1]_28 chr2:64142930-64143030 1.2e-05 68_[+1]_11 chr1:23155324-23155424 1.3e-05 52_[+1]_27 chr2:20450081-20450181 1.5e-05 1_[+1]_78 chr12:69332825-69332925 1.6e-05 18_[-1]_61 chr5:33807259-33807359 1.8e-05 24_[+1]_55 chr1:13876006-13876106 1.8e-05 5_[-1]_74 chr5:31637533-31637633 3.1e-05 51_[-1]_28 chr9:90149258-90149358 3.1e-05 42_[-1]_37 chr5:123423664-123423764 4e-05 47_[+1]_32 chr2:168878393-168878493 6.1e-05 34_[+1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAYAMAMAMAMAAAWA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAYAMAMAMAMAAAWA width=21 seqs=50 chr18:45915764-45915864 ( 15) AAAAAAAAAAAAAAAAAAAAA 1 chr7:105416881-105416981 ( 16) AAACAAACAAACAAACAAAAA 1 chr14:57175649-57175749 ( 10) AAAAAAATTCACACAAAAAAA 1 chr17:8130222-8130322 ( 2) AACAAAACACACACAAAAAAA 1 chr12:22144598-22144698 ( 56) AAAAAAAAAAAAAAAAAAGAA 1 chr6:14306636-14306736 ( 10) AAACATATGAAAAAAAAAAAA 1 chr20:36487892-36487992 ( 64) AAAAAAGCTAAAAAAAAAAAA 1 chr9:16516111-16516211 ( 61) AAAAAAACAAACAAACCAAGA 1 chr6:8279591-8279691 ( 46) AAGGAAAAAAAAAAACAAAAA 1 chr12:80149368-80149468 ( 1) AAAAAAAAAAAAAAAAAACCA 1 chr17:54885184-54885284 ( 30) AAATAAATAAATAAATAAATA 1 chr21:31594988-31595088 ( 23) ACACATACACACACACACAAA 1 chr18:62487965-62488065 ( 39) CAAAATACTAACAGACAAAAT 1 chr10:59583131-59583231 ( 30) AAACAAATTAACTGACAAAAA 1 chr4:24473994-24474094 ( 68) AAAAAAGCACACATACACAAA 1 chr1:112247740-112247840 ( 57) AAAAAAATAAAAACAACAGAG 1 chrX:9141507-9141607 ( 11) ACAAAAACAAAAATTAACAAA 1 chr8:89100084-89100184 ( 53) AAAAAAATGTACATACATATA 1 chr1:10004321-10004421 ( 65) CAAAAAATTAAAAATAAAATT 1 chr2:225523546-225523646 ( 77) CAAAACATTCACACACAAACA 1 chr16:74070454-74070554 ( 77) AAAAAAATTAAAACCAAAACT 1 chr1:47956592-47956692 ( 13) CTAAAAATAAAAAGTAAAATA 1 chr2:173500297-173500397 ( 1) AAGAATACAAAAAACAGAAAA 1 chr2:84363614-84363714 ( 28) AAAAAGACACATAGAGAAATA 1 chr19:55641586-55641686 ( 7) AAACAAAAAAAGAAAGAAAGA 1 chr5:152338096-152338196 ( 62) AACAATATGAACAGTAAAATA 1 chr7:17679406-17679506 ( 60) ACAAATACTCAACCAGAAAAA 1 chr6:166555839-166555939 ( 75) AACAACACAAACAAAACAAAA 1 chr22:46234527-46234627 ( 71) AAATAAAAACACTGTAAAATA 1 chr7:81652299-81652399 ( 78) AAACAAATGAATAAAGGAAAG 1 chr22:33446798-33446898 ( 28) AAATAAATTAAAACCCGTATA 1 chr1:91748463-91748563 ( 66) CTATAAACAAACAAACAAAAC 1 chr3:60862348-60862448 ( 51) AAAACAATGAATAAACAACTA 1 chr12:87341898-87341998 ( 40) CAAGATATATACACACATGAA 1 chr1:19233552-19233652 ( 68) AAAAATAATAATAAAGCAAAG 1 chrX:24109077-24109177 ( 18) AAAAAAGTACAAAGTGAACCA 1 chr8:54233164-54233264 ( 34) CAAAATATTTATAAACATAGA 1 chr10:4719599-4719699 ( 11) ATGAAAACACATCATAAAAAA 1 chr3:78479101-78479201 ( 19) AAGGCAATACAAAGAGATAAA 1 chr5:125233666-125233766 ( 52) AAAAAAGCAAAGACAGGAAAT 1 chr2:64142930-64143030 ( 69) ACATATACATAAATAAACAAT 1 chr1:23155324-23155424 ( 53) CAGTAAACACACACGCATAGA 1 chr2:20450081-20450181 ( 2) ACGTAAATGTACACTAAAATG 1 chr12:69332825-69332925 ( 19) ACATATATACATACATATATG 1 chr5:33807259-33807359 ( 25) ACAGATAAAAAAACTAAAGTT 1 chr1:13876006-13876106 ( 6) ACAAATAAAAACCCAAATCCA 1 chr5:31637533-31637633 ( 52) ATGAATATGCAAATAAATGTA 1 chr9:90149258-90149358 ( 43) AAATAAACTCAATGGAAAGTA 1 chr5:123423664-123423764 ( 48) ACACACACACACACCCACACG 1 chr2:168878393-168878493 ( 35) CAGCAAATATACATATATATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAYAMAMAMAMAAAWA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 11.0391 E= 1.0e-018 157 -31 -1229 -1229 142 -31 -1229 -179 149 -190 -48 -1229 107 -48 -148 -62 179 -248 -1229 -1229 121 -190 -348 2 173 -1229 -148 -1229 -62 77 -1229 67 116 -1229 -67 -21 102 52 -1229 -120 185 -1229 -1229 -1229 53 84 -248 -79 167 -190 -1229 -220 46 52 -31 -120 134 -148 -248 -62 73 52 -48 -220 160 -148 -148 -1229 134 -116 -1229 -47 153 -148 -90 -1229 85 -90 -148 12 138 -348 -90 -98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAYAMAMAMAMAAAWA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 50 E= 1.0e-018 0.820000 0.180000 0.000000 0.000000 0.740000 0.180000 0.000000 0.080000 0.780000 0.060000 0.160000 0.000000 0.580000 0.160000 0.080000 0.180000 0.960000 0.040000 0.000000 0.000000 0.640000 0.060000 0.020000 0.280000 0.920000 0.000000 0.080000 0.000000 0.180000 0.380000 0.000000 0.440000 0.620000 0.000000 0.140000 0.240000 0.560000 0.320000 0.000000 0.120000 1.000000 0.000000 0.000000 0.000000 0.400000 0.400000 0.040000 0.160000 0.880000 0.060000 0.000000 0.060000 0.380000 0.320000 0.180000 0.120000 0.700000 0.080000 0.040000 0.180000 0.460000 0.320000 0.160000 0.060000 0.840000 0.080000 0.080000 0.000000 0.700000 0.100000 0.000000 0.200000 0.800000 0.080000 0.120000 0.000000 0.500000 0.120000 0.080000 0.300000 0.720000 0.020000 0.120000 0.140000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAYAMAMAMAMAAAWA MEME-1 regular expression -------------------------------------------------------------------------------- AAAAA[AT]A[TC][AT][AC]A[AC]A[AC]A[AC]A[AT]A[AT]A -------------------------------------------------------------------------------- Time 334.85 secs. ******************************************************************************** ******************************************************************************** MOTIF SCCSCYGCMSCYSCS MEME-2 width = 15 sites = 44 llr = 486 E-value = 3.7e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCCSCYGCMSCYSCS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::1::32:::1: pos.-specific C 57a695195574396 probability G 52:4:16113227:3 matrix T :1:::42:1:14::1 bits 2.2 1.9 * 1.7 * * * * 1.5 * * * * Relative 1.3 * * * ** Entropy 1.1 * *** * ** (15.9 bits) 0.9 ***** * * *** 0.6 ***** ** ** *** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel GCCCCCGCCCCTGCC consensus CG G TT AG CC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCSCYGCMSCYSCS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr13:30424592-30424692 - 79 6.34e-09 TCAGGCA GCCGCCGCCGCCGCC GCTGCCGCCA chr12:58129842-58129942 - 34 1.30e-07 TCCCAGAGTT CCCGCCGCAGCTGCG GCGCCCCGGG chr11:125036804-12503690 + 12 1.30e-07 ATTACCCAAA GCCCCTGCCCTTGCC CTCCTGCTCT chr7:111514223-111514323 - 47 1.56e-07 GGTCCTGATG GCCCCTGCAACTGCC TCACTTTAAA chr20:56259124-56259224 - 78 2.09e-07 AATTTCCA CCCGCCTCCCCTCCC GCAGTCATCA chr22:45192279-45192379 - 21 2.73e-07 GGTCTTAGAG CCCCCCACCCCCGCC ATGAATAACA chr2:232545521-232545621 - 86 3.20e-07 . CCCGCTGCCACCCCC GGCCCAGCTG chr1:53935886-53935986 - 72 4.28e-07 TAGGCAACAG GCCCCGGCCCCGCCC GCAACTGCTG chr5:71403087-71403187 + 1 4.85e-07 . GCCGCCTCCCCGCCC TCTCTCACTC chr15:40543141-40543241 + 4 5.47e-07 GGT CCCCCTCCCACTGCC CCCTCATCCA chr2:20399838-20399938 - 23 5.47e-07 TTTCTTCCCC GCCCCTGCACCTGCT GATGGAGCAG chr14:105309989-10531008 - 65 7.08e-07 ACGCGTGTCT GCCCCCGCTGCGCCC AGACGCGCCT chr11:61735607-61735707 + 34 8.05e-07 TTTCGGGTCC GCCCCTGCCCTTCCG ACTCCTCCGA chr19:49222237-49222337 - 32 9.10e-07 CCTCTATGGG GCCCCTGCCCTGCCC CCTCTCCGTC chr20:35113099-35113199 - 38 1.02e-06 GTCTATCACT GCCGCAGCAGCTGCC CCAGACCTCC chr2:173500297-173500397 + 69 1.02e-06 gagactgctg cccccctccaccccg gggctaattc chr18:25747928-25748028 - 41 1.02e-06 GGGATGTAAT CCCCCCGCTCCCGCT TAACATAAAT chr3:182103174-182103274 + 24 1.28e-06 CAATCCAGGA CCCCCCACAGCTGCC CTTGGATCCC chr17:40729652-40729752 - 64 1.60e-06 CCGTTCGAGG CCCGCCCCCGTCGCC GGAAGGAGCC chr17:7080882-7080982 + 7 1.79e-06 AGTCCA CCCCCTCCTCCCGCG CCTTGAAACG chr22:39268544-39268644 + 42 2.20e-06 GAGCCCGAGT CTCGCCGCCACCGCG CATCTCCCGC chr1:100598613-100598713 + 75 2.44e-06 CCTCCGCGAC GTCGCCGCACGCGCC TGGTTTTCCA chr6:37190141-37190241 - 11 2.70e-06 CCCCAGGAGG CCCCCTTCCCCGGCT TCCTGCCGTC chr18:23306244-23306344 + 21 2.99e-06 ATGTGGCAAG GCCCCTGCCGCGCAC ATGCATATGC chr16:75285142-75285242 + 73 2.99e-06 GCGGTTCCCA GGCCCCGCAGGTCCG GCAGGAAATG chr6:139014348-139014448 + 25 3.30e-06 ACCTGCGGCT CCCGCGGCTGCCGCG CCCAGCGCCC chr1:48963831-48963931 + 73 3.30e-06 CTGCTGGTGA GGCCCGGCTGCTGCC ATCCTGAGAG chr1:44529585-44529685 - 31 3.63e-06 ACTCTGCTCT GGCCCCGCACTGCCC TGCTGACCCG chr22:51170021-51170121 - 16 3.99e-06 CCAATGTCTC CCCCCTCCCCCCGAG TCACCAAGGC chr4:170947394-170947494 + 55 3.99e-06 CGGGCGAGCC GCCTCCGCCGGCGCC TCACAGCGTT chr2:71503721-71503821 - 68 3.99e-06 AACCTGCGGT GCCCCGGCAGTCGCG GAATCCGGGC chr1:203259735-203259835 - 50 4.38e-06 TCCCCAAGAG CGCCCCTGCCCTGCC GGCCCCTCCG chr10:121577644-12157774 - 86 4.80e-06 . GGCCCTGCAGGTCCG TGGTTTCCTC chr14:70041507-70041607 + 46 5.26e-06 TCCCACGCTG CCCCCTGCGCCTCCT GGCGGACACT chr14:65450172-65450272 - 70 5.75e-06 GGTCATCTCC CTCCCCTCACGCGCC ACCCCCCAAA chr19:41222502-41222602 + 43 7.46e-06 TTTGAAAGTC CGTCCCGCCCCTGCG TGAAGAATGG chr6:24667084-24667184 + 36 8.11e-06 TCATGGCGCT CCCGCATCAACCGCC CGGCGGGGAA chr2:65454119-65454219 - 35 1.31e-05 TTTCAAACGT GGCGCTGCCACTCAC GAGTTTTGTG chr2:43445184-43445284 - 69 1.42e-05 GGCCGCCTGT GTCCCCTCCAGTGCG CTCAGTGTTG chr22:41697385-41697485 - 31 1.90e-05 CGGCTCCCGT CGCCTCGCCGCGCCC GGGGTGGGCG chr1:210502698-210502798 + 33 2.19e-05 TGGCAGTATC GGCGGTGCGCCTGCC TGCCTGCTGT chr19:38397743-38397843 - 67 5.40e-05 CCACTTCCAA GCCGCTTCGCGCGAG TCCTCCTGGG chr10:120354019-12035411 - 58 8.93e-05 TGGAGCTCAA GCCGCACGACGTGCG CCTCTGCGAG chr12:106975415-10697551 + 54 1.27e-04 CTAATCACAG CGCGGCCGACCCGCG AACGGCCACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCSCYGCMSCYSCS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:30424592-30424692 6.3e-09 78_[-2]_7 chr12:58129842-58129942 1.3e-07 33_[-2]_52 chr11:125036804-12503690 1.3e-07 11_[+2]_74 chr7:111514223-111514323 1.6e-07 46_[-2]_39 chr20:56259124-56259224 2.1e-07 77_[-2]_8 chr22:45192279-45192379 2.7e-07 20_[-2]_65 chr2:232545521-232545621 3.2e-07 85_[-2] chr1:53935886-53935986 4.3e-07 71_[-2]_14 chr5:71403087-71403187 4.9e-07 [+2]_85 chr15:40543141-40543241 5.5e-07 3_[+2]_82 chr2:20399838-20399938 5.5e-07 22_[-2]_63 chr14:105309989-10531008 7.1e-07 64_[-2]_21 chr11:61735607-61735707 8e-07 33_[+2]_52 chr19:49222237-49222337 9.1e-07 31_[-2]_54 chr20:35113099-35113199 1e-06 37_[-2]_48 chr2:173500297-173500397 1e-06 68_[+2]_17 chr18:25747928-25748028 1e-06 40_[-2]_45 chr3:182103174-182103274 1.3e-06 23_[+2]_62 chr17:40729652-40729752 1.6e-06 63_[-2]_22 chr17:7080882-7080982 1.8e-06 6_[+2]_79 chr22:39268544-39268644 2.2e-06 41_[+2]_44 chr1:100598613-100598713 2.4e-06 74_[+2]_11 chr6:37190141-37190241 2.7e-06 10_[-2]_75 chr18:23306244-23306344 3e-06 20_[+2]_65 chr16:75285142-75285242 3e-06 72_[+2]_13 chr6:139014348-139014448 3.3e-06 24_[+2]_61 chr1:48963831-48963931 3.3e-06 72_[+2]_13 chr1:44529585-44529685 3.6e-06 30_[-2]_55 chr22:51170021-51170121 4e-06 15_[-2]_70 chr4:170947394-170947494 4e-06 54_[+2]_31 chr2:71503721-71503821 4e-06 67_[-2]_18 chr1:203259735-203259835 4.4e-06 49_[-2]_36 chr10:121577644-12157774 4.8e-06 85_[-2] chr14:70041507-70041607 5.3e-06 45_[+2]_40 chr14:65450172-65450272 5.7e-06 69_[-2]_16 chr19:41222502-41222602 7.5e-06 42_[+2]_43 chr6:24667084-24667184 8.1e-06 35_[+2]_50 chr2:65454119-65454219 1.3e-05 34_[-2]_51 chr2:43445184-43445284 1.4e-05 68_[-2]_17 chr22:41697385-41697485 1.9e-05 30_[-2]_55 chr1:210502698-210502798 2.2e-05 32_[+2]_53 chr19:38397743-38397843 5.4e-05 66_[-2]_19 chr10:120354019-12035411 8.9e-05 57_[-2]_28 chr12:106975415-10697551 0.00013 53_[+2]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCSCYGCMSCYSCS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCCSCYGCMSCYSCS width=15 seqs=44 chr13:30424592-30424692 ( 79) GCCGCCGCCGCCGCC 1 chr12:58129842-58129942 ( 34) CCCGCCGCAGCTGCG 1 chr11:125036804-12503690 ( 12) GCCCCTGCCCTTGCC 1 chr7:111514223-111514323 ( 47) GCCCCTGCAACTGCC 1 chr20:56259124-56259224 ( 78) CCCGCCTCCCCTCCC 1 chr22:45192279-45192379 ( 21) CCCCCCACCCCCGCC 1 chr2:232545521-232545621 ( 86) CCCGCTGCCACCCCC 1 chr1:53935886-53935986 ( 72) GCCCCGGCCCCGCCC 1 chr5:71403087-71403187 ( 1) GCCGCCTCCCCGCCC 1 chr15:40543141-40543241 ( 4) CCCCCTCCCACTGCC 1 chr2:20399838-20399938 ( 23) GCCCCTGCACCTGCT 1 chr14:105309989-10531008 ( 65) GCCCCCGCTGCGCCC 1 chr11:61735607-61735707 ( 34) GCCCCTGCCCTTCCG 1 chr19:49222237-49222337 ( 32) GCCCCTGCCCTGCCC 1 chr20:35113099-35113199 ( 38) GCCGCAGCAGCTGCC 1 chr2:173500297-173500397 ( 69) CCCCCCTCCACCCCG 1 chr18:25747928-25748028 ( 41) CCCCCCGCTCCCGCT 1 chr3:182103174-182103274 ( 24) CCCCCCACAGCTGCC 1 chr17:40729652-40729752 ( 64) CCCGCCCCCGTCGCC 1 chr17:7080882-7080982 ( 7) CCCCCTCCTCCCGCG 1 chr22:39268544-39268644 ( 42) CTCGCCGCCACCGCG 1 chr1:100598613-100598713 ( 75) GTCGCCGCACGCGCC 1 chr6:37190141-37190241 ( 11) CCCCCTTCCCCGGCT 1 chr18:23306244-23306344 ( 21) GCCCCTGCCGCGCAC 1 chr16:75285142-75285242 ( 73) GGCCCCGCAGGTCCG 1 chr6:139014348-139014448 ( 25) CCCGCGGCTGCCGCG 1 chr1:48963831-48963931 ( 73) GGCCCGGCTGCTGCC 1 chr1:44529585-44529685 ( 31) GGCCCCGCACTGCCC 1 chr22:51170021-51170121 ( 16) CCCCCTCCCCCCGAG 1 chr4:170947394-170947494 ( 55) GCCTCCGCCGGCGCC 1 chr2:71503721-71503821 ( 68) GCCCCGGCAGTCGCG 1 chr1:203259735-203259835 ( 50) CGCCCCTGCCCTGCC 1 chr10:121577644-12157774 ( 86) GGCCCTGCAGGTCCG 1 chr14:70041507-70041607 ( 46) CCCCCTGCGCCTCCT 1 chr14:65450172-65450272 ( 70) CTCCCCTCACGCGCC 1 chr19:41222502-41222602 ( 43) CGTCCCGCCCCTGCG 1 chr6:24667084-24667184 ( 36) CCCGCATCAACCGCC 1 chr2:65454119-65454219 ( 35) GGCGCTGCCACTCAC 1 chr2:43445184-43445284 ( 69) GTCCCCTCCAGTGCG 1 chr22:41697385-41697485 ( 31) CGCCTCGCCGCGCCC 1 chr1:210502698-210502798 ( 33) GGCGGTGCGCCTGCC 1 chr19:38397743-38397843 ( 67) GCCGCTTCGCGCGAG 1 chr10:120354019-12035411 ( 58) GCCGCACGACGTGCG 1 chr12:106975415-10697551 ( 54) CGCGGCCGACCCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCSCYGCMSCYSCS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 12.0698 E= 3.7e-010 -1210 110 123 -1210 -1210 161 3 -161 -1210 213 -1210 -360 -1210 146 70 -360 -1210 206 -230 -360 -202 110 -130 39 -260 -71 146 -44 -1210 206 -171 -1210 20 116 -171 -128 -61 116 51 -1210 -1210 161 -30 -102 -1210 79 -30 64 -1210 61 156 -1210 -161 203 -1210 -1210 -1210 135 61 -161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCSCYGCMSCYSCS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 44 E= 3.7e-010 0.000000 0.477273 0.522727 0.000000 0.000000 0.681818 0.227273 0.090909 0.000000 0.977273 0.000000 0.022727 0.000000 0.613636 0.363636 0.022727 0.000000 0.931818 0.045455 0.022727 0.068182 0.477273 0.090909 0.363636 0.045455 0.136364 0.613636 0.204545 0.000000 0.931818 0.068182 0.000000 0.318182 0.500000 0.068182 0.113636 0.181818 0.500000 0.318182 0.000000 0.000000 0.681818 0.181818 0.136364 0.000000 0.386364 0.181818 0.431818 0.000000 0.340909 0.659091 0.000000 0.090909 0.909091 0.000000 0.000000 0.000000 0.568182 0.340909 0.090909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCSCYGCMSCYSCS MEME-2 regular expression -------------------------------------------------------------------------------- [GC][CG]C[CG]C[CT][GT]C[CA][CG]C[TC][GC]C[CG] -------------------------------------------------------------------------------- Time 624.04 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTTGCATRWBAAWRRMW MEME-3 width = 18 sites = 54 llr = 615 E-value = 1.9e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTTGCATRWBAAWRRMW MEME-3 Description -------------------------------------------------------------------------------- Simplified A 7:123:a:56:8a65344 pos.-specific C 1:2:19::1:41:1:141 probability G 1:::7:::313:::4611 matrix T 1a78:::a2331:31114 bits 2.2 1.9 * 1.7 * *** * 1.5 * *** * Relative 1.3 * *** * Entropy 1.1 * * *** ** (16.4 bits) 0.9 * ***** ** 0.6 ******** * ** * 0.4 ******** ******* 0.2 ****************** 0.0 ------------------ Multilevel ATTTGCATAACAAAAGCT consensus C A GTT TGAAA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTGCATRWBAAWRRMW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------ chr12:14819016-14819116 - 39 1.57e-09 TAGAGGCCGC ATTTGCATAATAAAAGAT TAGGGTGAGA chr1:218784833-218784933 + 62 5.59e-09 AAAAAGATTA ATTTGCATGATAATAGCA GAATTTCTTA chr9:24159051-24159151 - 69 1.19e-08 TTATATCTGG ATTTGCATTATAAAGGAT GACATAAACC chr16:64614584-64614684 + 40 1.53e-08 ttgaagccat atttgcataataaaagac aagggttcga chrX:122953530-122953630 + 67 3.05e-08 aatggcctac atttgcatatcaaaggtt gcctgctggg chr10:66025152-66025252 + 63 5.70e-08 gaggaagaaa atctgcatatgaatggat ccatgcagtt chr2:121497994-121498094 + 26 1.22e-07 GGTTTCAGCT ATTAGCATAAGAAAAAAA GTTTTAGTGC chr12:116865083-11686518 - 53 1.41e-07 AAAGGGGCAG ATTTGCATTTTAAAAGAC CACTGTGGAG chr5:38660428-38660528 + 31 1.41e-07 tagagaacct gtctgcataataaaagat cagggtgggg chr9:71177506-71177606 - 21 1.83e-07 GAATTCATGC ATTTGCATAAGAACAACA CCAGTTAGCA chr4:94393692-94393792 + 33 2.41e-07 AGGATCCCAT TTTTGCATATGAATGGAA CAAAGGTTGG chr13:24173763-24173863 - 14 2.41e-07 TGGAGGCTTC ATCTGCATGATAAAACCT TGGTCTCTAA chr11:134334090-13433419 - 62 3.51e-07 AGCCTGGTGG GTTTGCATATCAAAGACC TGCTGGCAGG chr9:23907462-23907562 + 37 5.06e-07 ATTCTTACAC TTTTGCATCACAAAAGAA CAGGTCCAGC chr5:75440802-75440902 + 57 6.39e-07 GGCCCATGCA ATTTGCATCACCATAGCT GCCCTCTCCA chr13:30911130-30911230 - 54 6.39e-07 GGAGTGGCAC TTTAGCATGTTAAAGGCT TTGAGAAGAT chr11:84898008-84898108 + 43 6.39e-07 TTAAAAATCC ATTTACATGATAACAGAT ATACTGAACA chr10:43508050-43508150 + 63 6.39e-07 aagaggcttc atctacataataaaaacc ttgttgttca chr2:43445184-43445284 + 18 1.00e-06 AAGGCCCTCG GTCTGCATTTCAAAGGCC CGGGTTCCCT chr5:13733796-13733896 + 8 1.12e-06 aaaatgc atttgcatatgtatGACT ATGGACCTAT chr11:111207356-11120745 + 69 1.24e-06 GCTGGAGCTC ATTTGCATTGGAATTGCA GGGCACTGCA chr13:56741169-56741269 - 67 1.24e-06 GGCTGCAGAC ATTTGCATAACTAAAAGA AAGGCAAGTG chrX:15834711-15834811 - 33 1.24e-06 ATTTCCCTGC CTTAACATAACAAAGGCA TTCCAGCTCA chr5:101081791-101081891 + 61 1.38e-06 CTGGATGCAG ATTTACATTACAATGTCT GAATTCCTGG chr16:5373329-5373429 - 56 1.53e-06 AACCCACGTA ATTAACATGAGCAAGGCT GGAGGCCAGG chr3:17551402-17551502 - 58 1.70e-06 ACTTACATTA TTTTGCATGACAATTGGT GAACTTGGTT chr6:104097842-104097942 + 68 1.88e-06 aatgaaatta attaccatgagaatggat tgttacaaag chr9:35203614-35203714 + 52 2.29e-06 gcctgcattc atatgcatgagcaaggaa atgacctgaa chr11:114842954-11484305 - 43 2.79e-06 AACCAAACCG TTCTGCATAAGAAATAAA GGAATTTGGG chr18:22127357-22127457 + 32 2.79e-06 AGCTGAATTT CTCTGCATGACAAAGAGA TTGAGAAAGG chr11:113770349-11377044 + 9 2.79e-06 CAGTTGCT GTTTGCATAATAAACACT TCCTTATTAT chr20:19578803-19578903 + 43 3.06e-06 GGAAATCTCA CTCTGCATTTGAATGGAA ACCTGGAGCC chr3:73607735-73607835 - 77 3.36e-06 CTGCCA TTTTGCATTTGCAAGGAA TAGAGGGAGC chr18:57534541-57534641 + 56 3.36e-06 ATAGATGAAT ATTAACATGAGAATGAGA CATGCTTTGT chr13:24430525-24430625 - 47 3.69e-06 CCACCCCTTA ATTTGCATTTAAATAACA GTGGGTATAA chr1:22769948-22770048 - 25 4.05e-06 TAGGGGGTTC ATGTGCATAACAAGAACA ACTACTCTTA chr17:47903011-47903111 - 83 4.84e-06 . ATTTACATGACACAGGAG TCCCCTCTTA chr4:105224066-105224166 + 34 4.84e-06 tgaatctttc atttgcatatggaaacct acactggagc chr7:28317665-28317765 + 24 4.84e-06 AGACCTCAAA GTTTCCATAATCAAAGCT AGGGAGAGGC chr20:10402901-10403001 - 44 5.78e-06 AAAATGGAAC ATAAGCATGTCAATAAAA GGTGTATTCT chr4:43134096-43134196 + 77 7.47e-06 ATAGGTAATA ATGTGCATGGTAAAAGTT GAGTTT chr14:21240897-21240997 + 73 7.47e-06 gtgagacttc atctacataataagaacc ttgtctctac chr12:114709999-11471009 + 25 7.47e-06 ctcacttcta atctccataacaacagga acgctgtttg chr7:85165657-85165757 - 63 8.13e-06 CCAGAAATTT ATTTACATTGTAAAAATA TTTGACATTT chr7:153895712-153895812 - 40 8.84e-06 ATGCACATAT GTTTGTATAACAATGGTT AATCCAGTTG chr12:115076905-11507700 + 40 1.04e-05 AACAAATGGG ATTAGCACATCAAAGGTT TGGTTCTTTG chr20:8898851-8898951 + 64 1.04e-05 gaggaactgg atcagcatgagaatacag cgtctttacc chr19:54932130-54932230 + 35 1.13e-05 TCCACCCACC ATTAACATCACAATGACG TCCCTCCGCT chr13:71344495-71344595 + 3 1.13e-05 TG ATTTGAATATCTAAAGCA TTATAAACTT chr12:130481954-13048205 + 73 1.32e-05 CTTTGTAGGA ATTTACATAACACTTGCG CACACTcttt chr13:22274414-22274514 - 10 1.54e-05 CTAACTCTCA GTCTACATTTTAAAACAT AATGCTTCT chr4:115790609-115790709 + 75 2.24e-05 TGTCTTTCTA AATTACATATCAAATGGT AGATGGTC chr14:67579260-67579360 - 43 2.58e-05 TAAGGCAAGA ATTTGTATGGCAATATCT AGCGGCATTA chr18:62487965-62488065 - 64 5.09e-05 TACAATGTGA ATATACATATTAAATTCC TCAACAAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTGCATRWBAAWRRMW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:14819016-14819116 1.6e-09 38_[-3]_44 chr1:218784833-218784933 5.6e-09 61_[+3]_21 chr9:24159051-24159151 1.2e-08 68_[-3]_14 chr16:64614584-64614684 1.5e-08 39_[+3]_43 chrX:122953530-122953630 3.1e-08 66_[+3]_16 chr10:66025152-66025252 5.7e-08 62_[+3]_20 chr2:121497994-121498094 1.2e-07 25_[+3]_57 chr12:116865083-11686518 1.4e-07 52_[-3]_30 chr5:38660428-38660528 1.4e-07 30_[+3]_52 chr9:71177506-71177606 1.8e-07 20_[-3]_62 chr4:94393692-94393792 2.4e-07 32_[+3]_50 chr13:24173763-24173863 2.4e-07 13_[-3]_69 chr11:134334090-13433419 3.5e-07 61_[-3]_21 chr9:23907462-23907562 5.1e-07 36_[+3]_46 chr5:75440802-75440902 6.4e-07 56_[+3]_26 chr13:30911130-30911230 6.4e-07 53_[-3]_29 chr11:84898008-84898108 6.4e-07 42_[+3]_40 chr10:43508050-43508150 6.4e-07 62_[+3]_20 chr2:43445184-43445284 1e-06 17_[+3]_65 chr5:13733796-13733896 1.1e-06 7_[+3]_75 chr11:111207356-11120745 1.2e-06 68_[+3]_14 chr13:56741169-56741269 1.2e-06 66_[-3]_16 chrX:15834711-15834811 1.2e-06 32_[-3]_50 chr5:101081791-101081891 1.4e-06 60_[+3]_22 chr16:5373329-5373429 1.5e-06 55_[-3]_27 chr3:17551402-17551502 1.7e-06 57_[-3]_25 chr6:104097842-104097942 1.9e-06 67_[+3]_15 chr9:35203614-35203714 2.3e-06 51_[+3]_31 chr11:114842954-11484305 2.8e-06 42_[-3]_40 chr18:22127357-22127457 2.8e-06 31_[+3]_51 chr11:113770349-11377044 2.8e-06 8_[+3]_74 chr20:19578803-19578903 3.1e-06 42_[+3]_40 chr3:73607735-73607835 3.4e-06 76_[-3]_6 chr18:57534541-57534641 3.4e-06 55_[+3]_27 chr13:24430525-24430625 3.7e-06 46_[-3]_36 chr1:22769948-22770048 4e-06 24_[-3]_58 chr17:47903011-47903111 4.8e-06 82_[-3] chr4:105224066-105224166 4.8e-06 33_[+3]_49 chr7:28317665-28317765 4.8e-06 23_[+3]_59 chr20:10402901-10403001 5.8e-06 43_[-3]_39 chr4:43134096-43134196 7.5e-06 76_[+3]_6 chr14:21240897-21240997 7.5e-06 72_[+3]_10 chr12:114709999-11471009 7.5e-06 24_[+3]_58 chr7:85165657-85165757 8.1e-06 62_[-3]_20 chr7:153895712-153895812 8.8e-06 39_[-3]_43 chr12:115076905-11507700 1e-05 39_[+3]_43 chr20:8898851-8898951 1e-05 63_[+3]_19 chr19:54932130-54932230 1.1e-05 34_[+3]_48 chr13:71344495-71344595 1.1e-05 2_[+3]_80 chr12:130481954-13048205 1.3e-05 72_[+3]_10 chr13:22274414-22274514 1.5e-05 9_[-3]_73 chr4:115790609-115790709 2.2e-05 74_[+3]_8 chr14:67579260-67579360 2.6e-05 42_[-3]_40 chr18:62487965-62488065 5.1e-05 63_[-3]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTGCATRWBAAWRRMW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTTGCATRWBAAWRRMW width=18 seqs=54 chr12:14819016-14819116 ( 39) ATTTGCATAATAAAAGAT 1 chr1:218784833-218784933 ( 62) ATTTGCATGATAATAGCA 1 chr9:24159051-24159151 ( 69) ATTTGCATTATAAAGGAT 1 chr16:64614584-64614684 ( 40) ATTTGCATAATAAAAGAC 1 chrX:122953530-122953630 ( 67) ATTTGCATATCAAAGGTT 1 chr10:66025152-66025252 ( 63) ATCTGCATATGAATGGAT 1 chr2:121497994-121498094 ( 26) ATTAGCATAAGAAAAAAA 1 chr12:116865083-11686518 ( 53) ATTTGCATTTTAAAAGAC 1 chr5:38660428-38660528 ( 31) GTCTGCATAATAAAAGAT 1 chr9:71177506-71177606 ( 21) ATTTGCATAAGAACAACA 1 chr4:94393692-94393792 ( 33) TTTTGCATATGAATGGAA 1 chr13:24173763-24173863 ( 14) ATCTGCATGATAAAACCT 1 chr11:134334090-13433419 ( 62) GTTTGCATATCAAAGACC 1 chr9:23907462-23907562 ( 37) TTTTGCATCACAAAAGAA 1 chr5:75440802-75440902 ( 57) ATTTGCATCACCATAGCT 1 chr13:30911130-30911230 ( 54) TTTAGCATGTTAAAGGCT 1 chr11:84898008-84898108 ( 43) ATTTACATGATAACAGAT 1 chr10:43508050-43508150 ( 63) ATCTACATAATAAAAACC 1 chr2:43445184-43445284 ( 18) GTCTGCATTTCAAAGGCC 1 chr5:13733796-13733896 ( 8) ATTTGCATATGTATGACT 1 chr11:111207356-11120745 ( 69) ATTTGCATTGGAATTGCA 1 chr13:56741169-56741269 ( 67) ATTTGCATAACTAAAAGA 1 chrX:15834711-15834811 ( 33) CTTAACATAACAAAGGCA 1 chr5:101081791-101081891 ( 61) ATTTACATTACAATGTCT 1 chr16:5373329-5373429 ( 56) ATTAACATGAGCAAGGCT 1 chr3:17551402-17551502 ( 58) TTTTGCATGACAATTGGT 1 chr6:104097842-104097942 ( 68) ATTACCATGAGAATGGAT 1 chr9:35203614-35203714 ( 52) ATATGCATGAGCAAGGAA 1 chr11:114842954-11484305 ( 43) TTCTGCATAAGAAATAAA 1 chr18:22127357-22127457 ( 32) CTCTGCATGACAAAGAGA 1 chr11:113770349-11377044 ( 9) GTTTGCATAATAAACACT 1 chr20:19578803-19578903 ( 43) CTCTGCATTTGAATGGAA 1 chr3:73607735-73607835 ( 77) TTTTGCATTTGCAAGGAA 1 chr18:57534541-57534641 ( 56) ATTAACATGAGAATGAGA 1 chr13:24430525-24430625 ( 47) ATTTGCATTTAAATAACA 1 chr1:22769948-22770048 ( 25) ATGTGCATAACAAGAACA 1 chr17:47903011-47903111 ( 83) ATTTACATGACACAGGAG 1 chr4:105224066-105224166 ( 34) ATTTGCATATGGAAACCT 1 chr7:28317665-28317765 ( 24) GTTTCCATAATCAAAGCT 1 chr20:10402901-10403001 ( 44) ATAAGCATGTCAATAAAA 1 chr4:43134096-43134196 ( 77) ATGTGCATGGTAAAAGTT 1 chr14:21240897-21240997 ( 73) ATCTACATAATAAGAACC 1 chr12:114709999-11471009 ( 25) ATCTCCATAACAACAGGA 1 chr7:85165657-85165757 ( 63) ATTTACATTGTAAAAATA 1 chr7:153895712-153895812 ( 40) GTTTGTATAACAATGGTT 1 chr12:115076905-11507700 ( 40) ATTAGCACATCAAAGGTT 1 chr20:8898851-8898951 ( 64) ATCAGCATGAGAATACAG 1 chr19:54932130-54932230 ( 35) ATTAACATCACAATGACG 1 chr13:71344495-71344595 ( 3) ATTTGAATATCTAAAGCA 1 chr12:130481954-13048205 ( 73) ATTTACATAACACTTGCG 1 chr13:22274414-22274514 ( 10) GTCTACATTTTAAAACAT 1 chr4:115790609-115790709 ( 75) AATTACATATCAAATGGT 1 chr14:67579260-67579360 ( 43) ATTTGTATGGCAATATCT 1 chr18:62487965-62488065 ( 64) ATATACATATTAAATTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTGCATRWBAAWRRMW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 18 n= 49800 bayes= 10.4169 E= 1.9e-024 135 -201 -78 -132 -390 -1240 -1240 183 -232 -1 -259 131 -58 -1240 -1240 156 -9 -201 162 -1240 -390 208 -1240 -290 185 -1240 -1240 -1240 -1240 -359 -1240 183 80 -201 31 -58 110 -1240 -159 27 -390 80 31 19 159 -127 -359 -232 180 -259 -1240 -1240 105 -201 -259 27 80 -359 80 -132 10 -159 136 -232 35 99 -101 -158 42 -78 -159 62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTGCATRWBAAWRRMW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 18 nsites= 54 E= 1.9e-024 0.703704 0.055556 0.129630 0.111111 0.018519 0.000000 0.000000 0.981481 0.055556 0.222222 0.037037 0.685185 0.185185 0.000000 0.000000 0.814815 0.259259 0.055556 0.685185 0.000000 0.018519 0.944444 0.000000 0.037037 1.000000 0.000000 0.000000 0.000000 0.000000 0.018519 0.000000 0.981481 0.481481 0.055556 0.277778 0.185185 0.592593 0.000000 0.074074 0.333333 0.018519 0.388889 0.277778 0.314815 0.833333 0.092593 0.018519 0.055556 0.962963 0.037037 0.000000 0.000000 0.574074 0.055556 0.037037 0.333333 0.481481 0.018519 0.388889 0.111111 0.296296 0.074074 0.574074 0.055556 0.351852 0.444444 0.111111 0.092593 0.370370 0.129630 0.074074 0.425926 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTGCATRWBAAWRRMW MEME-3 regular expression -------------------------------------------------------------------------------- AT[TC]T[GA]CAT[AG][AT][CTG]AA[AT][AG][GA][CA][TA] -------------------------------------------------------------------------------- Time 895.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:85061603-85061703 5.85e-01 100 chr20:42753108-42753208 8.56e-01 100 chr6:8279591-8279691 2.69e-04 45_[-1(5.90e-08)]_34 chr16:64614584-64614684 1.55e-05 39_[+3(1.53e-08)]_43 chr2:714363-714463 6.73e-01 100 chr10:103891961-10389206 4.14e-01 100 chr12:66324308-66324408 2.00e-01 100 chrX:15834711-15834811 3.52e-03 32_[-3(1.24e-06)]_50 chr5:38660428-38660528 2.20e-04 30_[+3(1.41e-07)]_21_[-3(4.47e-05)]_\ 13 chr17:46800270-46800370 1.26e-01 100 chr17:12645537-12645637 6.98e-01 100 chr2:9850284-9850384 4.43e-01 100 chr1:205428159-205428259 8.65e-01 100 chr11:125036804-12503690 1.54e-03 11_[+2(1.30e-07)]_74 chr9:116954891-116954991 9.18e-01 100 chr12:16994482-16994582 2.82e-02 100 chr3:128706286-128706386 5.91e-01 100 chr13:36050469-36050569 5.71e-01 100 chr6:22068552-22068652 6.83e-01 100 chr12:114709999-11471009 1.57e-02 24_[+3(7.47e-06)]_58 chr3:39073834-39073934 8.25e-01 100 chr13:24173763-24173863 7.59e-04 13_[-3(2.41e-07)]_69 chr10:117545714-11754581 7.83e-01 100 chr2:98951250-98951350 1.49e-01 100 chr8:69883211-69883311 5.31e-03 22_[+3(1.32e-05)]_60 chr16:74070454-74070554 5.04e-04 76_[-1(4.77e-07)]_3 chr7:85165657-85165757 2.12e-02 62_[-3(8.13e-06)]_20 chr3:150339095-150339195 6.50e-02 16_[-1(3.49e-05)]_63 chr18:31826929-31827029 4.20e-01 100 chr8:108327945-108328045 5.09e-01 100 chr4:6976180-6976280 7.15e-01 100 chr13:64843642-64843742 3.03e-01 100 chr9:16516111-16516211 5.11e-05 60_[-1(3.90e-08)]_19 chr10:129534295-12953439 5.01e-01 100 chr1:177107016-177107116 2.36e-01 100 chr7:67888247-67888347 1.05e-01 100 chr11:8306652-8306752 7.33e-01 100 chr5:40170745-40170845 6.00e-01 100 chr15:63179294-63179394 5.66e-01 100 chr4:10159338-10159438 2.51e-01 100 chr19:38397743-38397843 3.45e-02 66_[-2(5.40e-05)]_19 chr2:167620869-167620969 7.99e-01 100 chr16:11626648-11626748 7.52e-01 100 chr19:5979067-5979167 1.19e-01 100 chr4:139581149-139581249 9.86e-01 100 chr4:88817339-88817439 6.18e-02 100 chr6:102670530-102670630 3.51e-01 100 chr6:2932665-2932765 9.86e-01 100 chr16:23978590-23978690 4.31e-01 100 chr9:94518120-94518220 7.61e-01 100 chr4:23754770-23754870 6.22e-01 100 chr12:14819016-14819116 5.94e-06 38_[-3(1.57e-09)]_44 chr7:37301451-37301551 9.85e-01 100 chr4:76753116-76753216 2.13e-01 100 chr17:73110165-73110265 3.08e-02 6_[+2(7.19e-05)]_13_[+2(8.81e-06)]_\ 51 chr2:71503721-71503821 2.39e-02 67_[-2(3.99e-06)]_18 chr2:121497994-121498094 9.65e-04 25_[+3(1.22e-07)]_57 chr1:48441135-48441235 7.06e-01 100 chr8:89100084-89100184 6.00e-04 40_[+1(2.69e-07)]_39 chr14:57175649-57175749 2.59e-06 9_[+1(2.48e-10)]_70 chr22:40605491-40605591 2.28e-01 100 chr4:104978519-104978619 1.64e-01 33_[+3(9.39e-05)]_49 chr2:83812529-83812629 3.28e-02 33_[+1(9.64e-05)]_46 chr2:187443997-187444097 9.24e-02 100 chr13:101871957-10187205 4.29e-01 100 chr1:152127532-152127632 7.62e-01 100 chr15:26936527-26936627 9.06e-01 100 chr4:94393692-94393792 1.73e-03 32_[+3(2.41e-07)]_50 chr5:67330727-67330827 2.20e-01 100 chr4:170947394-170947494 2.27e-02 54_[+2(3.99e-06)]_31 chr3:183154559-183154659 6.66e-01 100 chr17:7080882-7080982 9.53e-03 6_[+2(1.79e-06)]_79 chr2:19716981-19717081 6.86e-01 100 chr2:42795233-42795333 2.01e-01 100 chr4:136834052-136834152 7.30e-01 100 chr8:83480449-83480549 6.17e-01 100 chr12:87341898-87341998 4.62e-04 39_[-1(4.96e-06)]_40 chr3:150451915-150452015 6.80e-01 100 chr11:41928116-41928216 1.21e-01 100 chr2:84214261-84214361 1.08e-01 82_[+3(9.96e-05)] chr14:73774165-73774265 4.75e-01 100 chr9:121482483-121482583 4.52e-01 100 chr13:71344495-71344595 4.78e-03 2_[+3(1.13e-05)]_80 chr6:166555839-166555939 7.29e-05 4_[-3(6.96e-05)]_48_[-1(1.01e-06)]_\ 9 chr16:7277218-7277318 2.39e-02 22_[+1(7.28e-05)]_57 chr3:13133799-13133899 4.00e-01 100 chr9:103364615-103364715 2.75e-01 100 chr3:94875372-94875472 3.68e-01 100 chr8:122815780-122815880 2.30e-01 100 chr17:54885184-54885284 2.42e-04 29_[+1(1.30e-07)]_3_[+1(3.20e-06)]_\ 26 chr14:104264150-10426425 1.50e-01 100 chr21:44400873-44400973 5.48e-02 58_[-1(6.87e-05)]_21 chr8:21200099-21200199 9.60e-01 100 chr16:5373329-5373429 3.32e-04 55_[-3(1.53e-06)]_27 chr6:57539464-57539564 9.98e-01 100 chr16:1153767-1153867 2.93e-01 100 chr8:73007774-73007874 3.51e-02 100 chr3:151353802-151353902 1.04e-01 100 chrX:122953530-122953630 1.32e-05 66_[+3(3.05e-08)]_16 chr18:25747928-25748028 9.93e-04 40_[-2(1.02e-06)]_45 chr12:91031545-91031645 9.40e-02 100 chr22:51170021-51170121 7.66e-04 15_[-2(3.99e-06)]_39_[-3(9.39e-05)]_\ 13 chr9:140070011-140070111 3.15e-01 100 chr4:112638266-112638366 5.11e-01 100 chr2:79158826-79158926 2.50e-01 100 chr9:90149258-90149358 5.92e-02 42_[-1(3.06e-05)]_37 chr17:17565265-17565365 9.05e-01 100 chrX:9308838-9308938 6.22e-01 100 chr4:111507498-111507598 9.97e-01 100 chr6:3335479-3335579 5.36e-01 100 chr4:13619971-13620071 6.18e-01 100 chr11:36616006-36616106 7.36e-01 100 chr12:57852819-57852919 5.82e-01 100 chr13:24430525-24430625 1.17e-02 46_[-3(3.69e-06)]_36 chr11:8042569-8042669 7.20e-01 100 chrX:99325493-99325593 7.58e-01 100 chr7:146130994-146131094 1.07e-01 100 chr3:60862348-60862448 5.61e-03 50_[+1(4.96e-06)]_29 chr11:133582246-13358234 4.18e-02 100 chr7:119000680-119000780 7.27e-01 100 chr15:48097929-48098029 6.05e-01 100 chr4:96855616-96855716 2.51e-01 100 chr17:14220826-14220926 4.23e-02 100 chrX:9141507-9141607 6.18e-05 10_[+1(3.03e-07)]_24_[+3(6.55e-05)]_\ 27 chr12:123275320-12327542 9.07e-01 100 chr14:50605932-50606032 2.98e-01 100 chr8:130451823-130451923 9.30e-01 100 chr5:125233666-125233766 9.48e-03 51_[+1(1.04e-05)]_28 chr7:76858739-76858839 3.45e-01 100 chr19:49222237-49222337 7.54e-03 31_[-2(9.10e-07)]_54 chr14:70041507-70041607 6.85e-04 45_[+2(5.26e-06)]_40 chr1:91249971-91250071 6.09e-01 100 chr3:114394009-114394109 3.10e-01 100 chr22:40595065-40595165 3.68e-01 100 chr9:9036833-9036933 4.46e-01 100 chr4:87574501-87574601 6.91e-01 100 chr5:74688947-74689047 6.30e-01 100 chr10:120864373-12086447 1.47e-01 38_[+3(9.39e-05)]_44 chr14:105309989-10531008 5.72e-03 64_[-2(7.08e-07)]_21 chr2:15827507-15827607 2.05e-02 100 chr21:31594988-31595088 5.24e-04 22_[+1(1.47e-07)]_57 chr1:168187990-168188090 7.58e-02 100 chr2:168878393-168878493 1.58e-02 34_[+1(6.11e-05)]_45 chr7:17679406-17679506 1.41e-03 59_[+1(1.12e-06)]_20 chr18:57534541-57534641 7.20e-04 55_[+3(3.36e-06)]_27 chr4:72972986-72973086 3.17e-01 100 chr13:56741169-56741269 3.24e-03 66_[-3(1.24e-06)]_16 chr19:17156482-17156582 8.18e-01 100 chr20:24713277-24713377 2.97e-01 100 chr15:68759069-68759169 6.60e-01 100 chr5:137958202-137958302 4.40e-01 100 chr1:5431918-5432018 8.12e-01 100 chr4:190107229-190107329 2.26e-01 100 chr3:41404577-41404677 2.12e-01 100 chr16:25385936-25386036 7.91e-01 100 chr1:13876006-13876106 1.38e-02 5_[-1(1.75e-05)]_74 chr13:61253502-61253602 4.85e-01 100 chr17:2237951-2238051 3.68e-01 100 chr8:88244605-88244705 4.96e-01 100 chr22:45192279-45192379 3.72e-04 20_[-2(2.73e-07)]_18_[-2(1.90e-05)]_\ 32 chr15:49447849-49447949 7.26e-01 100 chr4:107237315-107237415 2.17e-01 100 chr1:19233552-19233652 2.24e-04 8_[-2(6.42e-05)]_44_[+1(5.40e-06)]_\ 12 chr12:42875296-42875396 6.25e-02 52_[-3(7.86e-05)]_30 chr3:28387210-28387310 9.16e-01 100 chr22:28257382-28257482 9.11e-01 100 chr3:184282239-184282339 6.17e-02 100 chr15:53605093-53605193 9.99e-01 100 chr18:3151925-3152025 3.01e-01 100 chr6:156872332-156872432 2.88e-01 100 chr17:2135502-2135602 4.31e-01 100 chr6:168959067-168959167 3.77e-01 100 chr20:50208890-50208990 1.13e-01 100 chr5:13733796-13733896 7.14e-05 7_[+3(1.12e-06)]_75 chr15:27061974-27062074 3.31e-01 100 chr5:70781714-70781814 7.63e-01 100 chr17:5832228-5832328 9.14e-01 100 chr5:31637533-31637633 1.25e-04 58_[+3(1.53e-06)]_24 chr17:40729652-40729752 3.25e-03 63_[-2(1.60e-06)]_22 chr11:61735607-61735707 2.07e-03 33_[+2(8.05e-07)]_52 chr3:133600743-133600843 8.97e-02 48_[+3(6.15e-05)]_34 chrX:15245265-15245365 4.18e-01 100 chr11:132753234-13275333 2.29e-01 100 chr1:48963831-48963931 1.83e-02 72_[+2(3.30e-06)]_13 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chr1:114521396-114521496 2.76e-01 100 chr2:108721921-108722021 5.91e-02 41_[+2(4.24e-05)]_44 chr5:75440802-75440902 9.37e-04 56_[+3(6.39e-07)]_26 chr11:113770349-11377044 5.07e-05 8_[+3(2.79e-06)]_10_[+3(7.47e-06)]_\ 46 chr11:134334090-13433419 1.62e-03 61_[-3(3.51e-07)]_21 chr14:67579260-67579360 3.03e-02 42_[-3(2.58e-05)]_40 chr18:62487965-62488065 4.11e-05 38_[-1(2.39e-07)]_4_[-3(5.09e-05)]_\ 19 chr18:22127357-22127457 5.81e-03 31_[+3(2.79e-06)]_51 chr11:112461632-11246173 7.59e-01 100 chr2:20512019-20512119 3.64e-01 100 chr12:20491413-20491513 8.96e-01 100 chr4:95938655-95938755 2.88e-01 100 chr19:36883161-36883261 7.65e-01 100 chr7:155074316-155074416 8.12e-01 100 chr5:44389404-44389504 5.55e-01 100 chr2:143231578-143231678 2.31e-01 100 chr13:78249017-78249117 4.90e-01 100 chr5:27472443-27472543 9.82e-01 100 chr2:140261500-140261600 6.54e-01 100 chr2:181544492-181544592 8.96e-01 100 chr6:104097842-104097942 6.73e-03 67_[+3(1.88e-06)]_15 chr5:120216122-120216222 6.24e-01 100 chr12:80149368-80149468 3.16e-04 [+1(7.70e-08)]_79 chr11:129161529-12916162 5.73e-01 100 chr21:45909974-45910074 1.72e-01 100 chr17:8130222-8130322 5.37e-06 1_[+1(4.31e-09)]_78 chr4:77891612-77891712 3.07e-01 100 chr7:39180239-39180339 5.46e-01 100 chr5:150984533-150984633 9.50e-01 100 chr9:108800648-108800748 8.29e-01 100 chr12:67868983-67869083 3.88e-01 100 chrX:39670747-39670847 2.65e-02 69_[-2(7.19e-05)]_16 chr12:95189486-95189586 9.99e-01 100 chr22:35010309-35010409 1.23e-01 100 chr8:26598589-26598689 4.76e-01 100 chr5:143988991-143989091 3.15e-01 100 chr10:24336267-24336367 6.22e-01 100 chr20:22436869-22436969 6.49e-01 100 chr9:20980974-20981074 8.39e-01 100 chr14:23340233-23340333 9.72e-01 100 chr14:59677151-59677251 4.23e-01 100 chr2:176867074-176867174 3.30e-01 100 chr21:20263754-20263854 9.06e-01 100 chr4:91246205-91246305 6.46e-02 8_[-1(5.10e-05)]_71 chr17:64536642-64536742 3.42e-01 100 chr1:100598613-100598713 8.87e-03 74_[+2(2.44e-06)]_11 chr2:229161867-229161967 4.80e-01 100 chr17:37730144-37730244 1.90e-01 74_[+2(7.59e-05)]_11 chr14:25148176-25148276 1.70e-01 100 chr14:65039935-65040035 7.46e-01 100 chr12:106975415-10697551 4.55e-03 30_[-3(5.42e-05)]_52 chr10:114895004-11489510 5.85e-01 100 chr11:114842954-11484305 1.19e-03 42_[-3(2.79e-06)]_40 chr14:65450172-65450272 3.04e-02 69_[-2(5.75e-06)]_16 chr6:1256203-1256303 4.82e-01 100 chr3:122217045-122217145 4.21e-01 100 chr13:22274414-22274514 8.37e-03 9_[-3(1.54e-05)]_12_[+3(9.39e-05)]_\ 43 chr10:16197975-16198075 1.93e-01 100 chr1:246246956-246247056 7.29e-01 100 chr5:51922619-51922719 1.31e-01 100 chr5:33807259-33807359 2.22e-02 24_[+1(1.75e-05)]_55 chr2:192186290-192186390 4.08e-01 100 chr20:33754479-33754579 5.34e-02 55_[+3(7.86e-05)]_27 chr10:10673071-10673171 5.84e-01 100 chr17:49759751-49759851 5.36e-01 100 chr6:70484959-70485059 5.72e-01 100 chr18:8216816-8216916 9.26e-02 100 chr12:63053210-63053310 6.07e-01 100 chr12:22144598-22144698 8.42e-05 55_[+1(6.10e-09)]_24 chr1:245419944-245420044 6.85e-02 100 chr3:78479101-78479201 3.51e-02 18_[-1(9.57e-06)]_61 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: surya.stanford.edu ********************************************************************************