# DREME 4.12.0 # command: dreme -v 1 -oc seqnotcut_memechip_out/dreme_out -png -dna -p seqnotcut_memechip_out/seqs-centered -n seqnotcut_memechip_out/seqs-shuffled # positives: 31382 from seqnotcut_memechip_out/seqs-centered (Mon Oct 21 17:12:48 PDT 2019) # negatives: 31382 from seqnotcut_memechip_out/seqs-shuffled (Mon Oct 21 17:12:48 PDT 2019) # host: surya.stanford.edu # when: Mon Oct 21 17:27:49 PDT 2019 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.273 C 0.226 G 0.226 T 0.275 MOTIF ATGYADAT DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ATGYADAT ATHTRCAT 2608 754 7.8e-250 3.5e-245 # ATGCAAAT ATTTGCAT 1012 188 1.6e-139 7.1e-135 # ATGTAAAT ATTTACAT 539 138 1.1e-057 4.9e-053 # ATGCAGAT ATCTGCAT 486 147 5.8e-044 2.6e-039 # ATGCATAT ATATGCAT 305 112 3.6e-022 1.6e-017 # ATGTAGAT ATCTACAT 192 88 2.2e-010 1.0e-005 # ATGTATAT ATATACAT 182 97 1.9e-007 8.7e-003 letter-probability matrix: alength= 4 w= 8 nsites= 2753 E= 3.5e-245 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.664003 0.000000 0.335997 1.000000 0.000000 0.000000 0.000000 0.571013 0.000000 0.245914 0.183073 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF ATRACAAW DREME-2 # Word RC Word Pos Neg P-value E-value # BEST ATRACAAW WTTGTYAT 1847 604 2.7e-151 1.2e-146 # ATAACAAA TTTGTTAT 602 194 2.9e-050 1.3e-045 # ATAACAAT ATTGTTAT 422 111 2.6e-044 1.2e-039 # ATGACAAT ATTGTCAT 392 127 5.2e-033 2.4e-028 # ATGACAAA TTTGTCAT 468 178 1.4e-031 6.5e-027 letter-probability matrix: alength= 4 w= 8 nsites= 1898 E= 1.2e-146 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.544257 0.000000 0.455743 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.566913 0.000000 0.000000 0.433087 MOTIF CTGKGD DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CTGKGD HCMCAG 13506 10493 1.1e-135 4.9e-131 # CTGGGA TCCCAG 3357 2323 2.3e-047 1.0e-042 # CTGTGT ACACAG 2664 1775 4.9e-044 2.2e-039 # CTGTGA TCACAG 2671 1908 5.0e-032 2.3e-027 # CTGTGG CCACAG 2694 1973 2.5e-028 1.2e-023 # CTGGGG CCCCAG 3144 2605 4.7e-014 2.1e-009 # CTGGGT ACCCAG 2254 1827 2.6e-012 1.2e-007 letter-probability matrix: alength= 4 w= 6 nsites= 17716 E= 4.9e-131 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.526530 0.473470 0.000000 0.000000 1.000000 0.000000 0.359223 0.000000 0.351547 0.289230 MOTIF RGAAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST RGAAA TTTCY 18084 15156 1.2e-121 5.3e-117 # AGAAA TTTCT 12270 10011 1.5e-079 6.9e-075 # GGAAA TTTCC 9616 7703 9.2e-066 4.1e-061 letter-probability matrix: alength= 4 w= 5 nsites= 27377 E= 5.3e-117 0.582387 0.000000 0.417613 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TATTYW DREME-5 # Word RC Word Pos Neg P-value E-value # BEST TATTYW WRAATA 8590 6589 4.8e-078 2.1e-073 # TATTTA TAAATA 2537 1719 5.5e-039 2.4e-034 # TATTTT AAAATA 3277 2356 3.1e-038 1.4e-033 # TATTCA TGAATA 2204 1694 1.7e-017 7.6e-013 # TATTCT AGAATA 2076 1723 1.9e-009 8.2e-005 letter-probability matrix: alength= 4 w= 6 nsites= 10517 E= 2.1e-073 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.419606 0.000000 0.580394 0.465057 0.000000 0.000000 0.534943 MOTIF CDGSAG DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CDGSAG CTSCHG 9883 7960 2.9e-065 1.3e-060 # CAGCAG CTGCTG 3115 2353 2.0e-027 8.7e-023 # CTGCAG CTGCAG 1817 1240 4.5e-027 2.0e-022 # CTGGAG CTCCAG 2923 2298 8.7e-020 3.8e-015 # CGGGAG CTCCCG 931 644 1.3e-013 5.5e-009 # CAGGAG CTCCTG 2683 2284 2.0e-009 8.6e-005 # CGGCAG CTGCCG 792 630 7.7e-006 3.4e-001 letter-probability matrix: alength= 4 w= 6 nsites= 12558 E= 1.3e-060 0.000000 1.000000 0.000000 0.000000 0.471094 0.000000 0.141663 0.387243 0.000000 0.000000 1.000000 0.000000 0.000000 0.464963 0.535037 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ATGCGCAT DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ATGCGCAT ATGCGCAT 216 9 4.8e-053 2.1e-048 # ATGCGCAT ATGCGCAT 216 9 4.8e-053 2.1e-048 letter-probability matrix: alength= 4 w= 8 nsites= 216 E= 2.1e-048 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CVCCRCC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CVCCRCC GGYGGBG 2367 1468 2.3e-051 1.0e-046 # CCCCACC GGTGGGG 848 511 1.0e-020 4.4e-016 # CCCCGCC GGCGGGG 562 318 5.1e-017 2.2e-012 # CGCCACC GGTGGCG 242 96 4.7e-016 2.0e-011 # CGCCGCC GGCGGCG 312 183 3.2e-009 1.4e-004 # CACCGCC GGCGGTG 216 117 2.9e-008 1.3e-003 # CACCACC GGTGGTG 526 373 1.5e-007 6.7e-003 letter-probability matrix: alength= 4 w= 7 nsites= 2657 E= 1.0e-046 0.000000 1.000000 0.000000 0.000000 0.264584 0.538577 0.196839 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.594656 0.000000 0.405344 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATGNTAAT DREME-9 # Word RC Word Pos Neg P-value E-value # BEST ATGNTAAT ATTANCAT 964 460 1.4e-042 6.0e-038 # ATGCTAAT ATTAGCAT 336 134 1.6e-021 6.9e-017 # ATGTTAAT ATTAACAT 301 134 3.1e-016 1.3e-011 # ATGATAAT ATTATCAT 195 106 1.5e-007 6.6e-003 # ATGGTAAT ATTACCAT 144 88 1.4e-004 6.0e+000 letter-probability matrix: alength= 4 w= 8 nsites= 979 E= 6.0e-038 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.199183 0.344229 0.148110 0.308478 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF ACGTGD DREME-10 # Word RC Word Pos Neg P-value E-value # BEST ACGTGD HCACGT 1089 570 6.6e-039 2.8e-034 # ACGTGG CCACGT 494 216 1.6e-026 6.9e-022 # ACGTGT ACACGT 371 177 2.9e-017 1.3e-012 # ACGTGA TCACGT 372 230 3.3e-009 1.4e-004 letter-probability matrix: alength= 4 w= 6 nsites= 1128 E= 2.8e-034 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.306738 0.000000 0.394504 0.298759 MOTIF CTBCCTS DREME-11 # Word RC Word Pos Neg P-value E-value # BEST CTBCCTS SAGGVAG 4421 3424 1.2e-033 4.9e-029 # CTTCCTG CAGGAAG 817 590 5.1e-010 2.2e-005 # CTCCCTC GAGGGAG 929 691 1.1e-009 4.9e-005 # CTGCCTC GAGGCAG 798 585 3.8e-009 1.6e-004 # CTTCCTC GAGGAAG 825 619 2.3e-008 9.8e-004 # CTCCCTG CAGGGAG 751 593 7.3e-006 3.1e-001 # CTGCCTG CAGGCAG 759 613 3.7e-005 1.6e+000 letter-probability matrix: alength= 4 w= 7 nsites= 4882 E= 4.9e-029 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.351495 0.312577 0.335928 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.527857 0.472143 0.000000 MOTIF ACACAYAC DREME-12 # Word RC Word Pos Neg P-value E-value # BEST ACACAYAC GTRTGTGT 477 178 4.7e-033 2.0e-028 # ACACACAC GTGTGTGT 355 118 4.1e-029 1.7e-024 # ACACATAC GTATGTGT 154 65 7.7e-010 3.3e-005 letter-probability matrix: alength= 4 w= 8 nsites= 773 E= 2.0e-028 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.809832 0.000000 0.190168 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACARWG DREME-13 # Word RC Word Pos Neg P-value E-value # BEST ACARWG CWYTGT 7440 6243 3.0e-031 1.3e-026 # ACAAAG CTTTGT 2783 2246 1.5e-015 6.6e-011 # ACAGAG CTCTGT 1943 1528 2.3e-013 9.7e-009 # ACAGTG CACTGT 1494 1208 1.0e-008 4.3e-004 # ACAATG CATTGT 1957 1752 2.8e-004 1.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 8509 E= 1.3e-026 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.582795 0.000000 0.417205 0.000000 0.580797 0.000000 0.000000 0.419203 0.000000 0.000000 1.000000 0.000000 MOTIF AAATRY DREME-14 # Word RC Word Pos Neg P-value E-value # BEST AAATRY RYATTT 5409 4392 2.5e-029 1.1e-024 # AAATGT ACATTT 2398 1909 6.2e-015 2.6e-010 # AAATAC GTATTT 634 432 2.4e-010 1.0e-005 # AAATGC GCATTT 2038 1696 4.3e-009 1.8e-004 # AAATAT ATATTT 766 634 2.0e-004 8.3e+000 letter-probability matrix: alength= 4 w= 6 nsites= 6041 E= 1.1e-024 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.236881 0.000000 0.763119 0.000000 0.000000 0.455223 0.000000 0.544777 MOTIF CDGGAA DREME-15 # Word RC Word Pos Neg P-value E-value # BEST CDGGAA TTCCHG 3292 2563 7.4e-024 3.1e-019 # CTGGAA TTCCAG 1811 1420 8.8e-013 3.7e-008 # CAGGAA TTCCTG 1137 851 3.9e-011 1.6e-006 # CGGGAA TTCCCG 473 355 2.1e-005 8.7e-001 letter-probability matrix: alength= 4 w= 6 nsites= 3497 E= 3.1e-019 0.000000 1.000000 0.000000 0.000000 0.328567 0.000000 0.138690 0.532742 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TATGCANA DREME-16 # Word RC Word Pos Neg P-value E-value # BEST TATGCANA TNTGCATA 565 279 1.0e-023 4.2e-019 # TATGCAAA TTTGCATA 275 111 1.4e-017 6.0e-013 # TATGCAGA TCTGCATA 121 60 3.3e-006 1.4e-001 # TATGCACA TGTGCATA 135 91 2.0e-003 8.5e+001 # TATGCATA TATGCATA 40 18 2.7e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 574 E= 4.2e-019 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.482578 0.240418 0.207317 0.069686 1.000000 0.000000 0.000000 0.000000 MOTIF AAAAMAAA DREME-17 # Word RC Word Pos Neg P-value E-value # BEST AAAAMAAA TTTKTTTT 1100 687 1.5e-023 6.4e-019 # AAAACAAA TTTGTTTT 443 245 1.4e-014 6.0e-010 # AAAAAAAA TTTTTTTT 711 462 1.1e-013 4.6e-009 letter-probability matrix: alength= 4 w= 8 nsites= 1293 E= 6.4e-019 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.644238 0.355762 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCWCCYAC DREME-18 # Word RC Word Pos Neg P-value E-value # BEST CCWCCYAC GTRGGWGG 531 269 3.6e-021 1.5e-016 # CCTCCCAC GTGGGAGG 225 118 3.6e-009 1.5e-004 # CCACCTAC GTAGGTGG 94 38 5.8e-007 2.4e-002 # CCACCCAC GTGGGTGG 119 59 3.9e-006 1.6e-001 # CCTCCTAC GTAGGAGG 97 57 7.8e-004 3.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 531 E= 1.5e-016 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.399247 0.000000 0.000000 0.600753 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.640301 0.000000 0.359699 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGAKGGCR DREME-19 # Word RC Word Pos Neg P-value E-value # BEST AGAKGGCR YGCCMTCT 557 289 5.8e-021 2.4e-016 # AGAGGGCG CGCCCTCT 116 42 1.6e-009 6.6e-005 # AGATGGCG CGCCATCT 65 20 5.1e-007 2.1e-002 # AGAGGGCA TGCCCTCT 219 135 4.4e-006 1.8e-001 # AGATGGCA TGCCATCT 158 92 1.7e-005 7.2e-001 letter-probability matrix: alength= 4 w= 8 nsites= 559 E= 2.4e-016 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.599284 0.400716 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.676208 0.000000 0.323792 0.000000 MOTIF CCCMTCCC DREME-20 # Word RC Word Pos Neg P-value E-value # BEST CCCMTCCC GGGAKGGG 484 255 9.1e-018 3.8e-013 # CCCCTCCC GGGAGGGG 319 156 2.4e-014 1.0e-009 # CCCATCCC GGGATGGG 172 101 9.9e-006 4.1e-001 letter-probability matrix: alength= 4 w= 8 nsites= 493 E= 3.8e-013 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.348884 0.651116 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GTGRCTCA DREME-21 # Word RC Word Pos Neg P-value E-value # BEST GTGRCTCA TGAGYCAC 300 135 6.9e-016 2.9e-011 # GTGGCTCA TGAGCCAC 194 81 3.3e-012 1.4e-007 # GTGACTCA TGAGTCAC 106 55 3.5e-005 1.5e+000 letter-probability matrix: alength= 4 w= 8 nsites= 301 E= 2.9e-011 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.352159 0.000000 0.647841 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGGRGGCG DREME-22 # Word RC Word Pos Neg P-value E-value # BEST AGGRGGCG CGCCYCCT 221 87 5.8e-015 2.4e-010 # AGGGGGCG CGCCCCCT 153 64 6.4e-010 2.7e-005 # AGGAGGCG CGCCTCCT 68 23 1.2e-006 5.2e-002 letter-probability matrix: alength= 4 w= 8 nsites= 222 E= 2.4e-010 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.306306 0.000000 0.693694 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CATTCWY DREME-23 # Word RC Word Pos Neg P-value E-value # BEST CATTCWY RWGAATG 2357 1884 2.9e-014 1.2e-009 # CATTCTC GAGAATG 608 455 1.2e-006 5.2e-002 # CATTCAT ATGAATG 670 522 8.4e-006 3.5e-001 # CATTCTT AAGAATG 771 646 4.3e-004 1.8e+001 # CATTCAC GTGAATG 386 316 4.4e-003 1.8e+002 letter-probability matrix: alength= 4 w= 7 nsites= 2461 E= 1.2e-009 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.434376 0.000000 0.000000 0.565624 0.000000 0.406745 0.000000 0.593255 MOTIF RCCTGTAR DREME-24 # Word RC Word Pos Neg P-value E-value # BEST RCCTGTAR YTACAGGY 491 281 1.3e-014 5.5e-010 # GCCTGTAA TTACAGGC 168 84 6.2e-008 2.6e-003 # ACCTGTAA TTACAGGT 128 71 3.2e-005 1.3e+000 # ACCTGTAG CTACAGGT 97 62 3.4e-003 1.4e+002 # GCCTGTAG CTACAGGC 98 64 4.6e-003 1.9e+002 letter-probability matrix: alength= 4 w= 8 nsites= 493 E= 5.5e-010 0.456389 0.000000 0.543611 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.604462 0.000000 0.395538 0.000000 MOTIF TDTAAA DREME-25 # Word RC Word Pos Neg P-value E-value # BEST TDTAAA TTTAHA 4275 3665 1.3e-013 5.3e-009 # TATAAA TTTATA 1581 1325 6.3e-007 2.6e-002 # TTTAAA TTTAAA 1458 1231 4.2e-006 1.7e-001 # TGTAAA TTTACA 1460 1295 7.0e-004 2.9e+001 letter-probability matrix: alength= 4 w= 6 nsites= 4661 E= 5.3e-009 0.000000 0.000000 0.000000 1.000000 0.349067 0.000000 0.325467 0.325467 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCCRG DREME-26 # Word RC Word Pos Neg P-value E-value # BEST CCCRG CYGGG 4059 3527 3.9e-011 1.6e-006 # CCCAG CTGGG 2470 2073 5.2e-010 2.1e-005 # CCCGG CCGGG 1848 1706 7.4e-003 3.1e+002 letter-probability matrix: alength= 4 w= 5 nsites= 4894 E= 1.6e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.545770 0.000000 0.454230 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ASAGA DREME-27 # Word RC Word Pos Neg P-value E-value # BEST ASAGA TCTST 9284 8581 2.6e-010 1.1e-005 # AGAGA TCTCT 6484 5918 7.4e-009 3.0e-004 # ACAGA TCTGT 3545 3269 2.1e-004 8.5e+000 letter-probability matrix: alength= 4 w= 5 nsites= 11199 E= 1.1e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.336548 0.663452 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATTATTAY DREME-28 # Word RC Word Pos Neg P-value E-value # BEST ATTATTAY RTAATAAT 302 168 2.8e-010 1.1e-005 # ATTATTAT ATAATAAT 214 108 1.6e-009 6.6e-005 # ATTATTAC GTAATAAT 97 63 4.4e-003 1.8e+002 letter-probability matrix: alength= 4 w= 8 nsites= 315 E= 1.1e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.298413 0.000000 0.701587 MOTIF ACATGGYG DREME-29 # Word RC Word Pos Neg P-value E-value # BEST ACATGGYG CRCCATGT 166 74 1.3e-009 5.2e-005 # ACATGGCG CGCCATGT 44 10 1.7e-006 6.8e-002 # ACATGGTG CACCATGT 124 64 7.0e-006 2.8e-001 letter-probability matrix: alength= 4 w= 8 nsites= 168 E= 5.2e-005 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.261905 0.000000 0.738095 0.000000 0.000000 1.000000 0.000000 MOTIF CCACTAGR DREME-30 # Word RC Word Pos Neg P-value E-value # BEST CCACTAGR YCTAGTGG 233 125 5.5e-009 2.2e-004 # CCACTAGA TCTAGTGG 117 61 1.6e-005 6.4e-001 # CCACTAGG CCTAGTGG 116 64 6.4e-005 2.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 234 E= 2.2e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 MOTIF ATAAAWG DREME-31 # Word RC Word Pos Neg P-value E-value # BEST ATAAAWG CWTTTAT 766 563 1.0e-008 4.1e-004 # ATAAAAG CTTTTAT 516 394 2.6e-005 1.1e+000 # ATAAATG CATTTAT 252 173 7.1e-005 2.8e+000 letter-probability matrix: alength= 4 w= 7 nsites= 775 E= 4.1e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.673548 0.000000 0.000000 0.326452 0.000000 0.000000 1.000000 0.000000 MOTIF CYTCCC DREME-32 # Word RC Word Pos Neg P-value E-value # BEST CYTCCC GGGARG 3153 2751 2.1e-008 8.4e-004 # CTTCCC GGGAAG 1920 1676 1.5e-005 6.0e-001 # CCTCCC GGGAGG 1364 1164 2.7e-005 1.1e+000 letter-probability matrix: alength= 4 w= 6 nsites= 3360 E= 8.4e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.414286 0.000000 0.585714 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTGACTYC DREME-33 # Word RC Word Pos Neg P-value E-value # BEST CTGACTYC GRAGTCAG 234 132 5.0e-008 2.0e-003 # CTGACTTC GAAGTCAG 133 74 2.4e-005 9.7e-001 # CTGACTCC GGAGTCAG 101 59 5.5e-004 2.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 235 E= 2.0e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.429787 0.000000 0.570213 0.000000 1.000000 0.000000 0.000000 MOTIF ACATTCY DREME-34 # Word RC Word Pos Neg P-value E-value # BEST ACATTCY RGAATGT 619 447 6.0e-008 2.4e-003 # ACATTCT AGAATGT 242 163 4.8e-005 1.9e+000 # ACATTCC GGAATGT 379 285 1.4e-004 5.6e+000 letter-probability matrix: alength= 4 w= 7 nsites= 626 E= 2.4e-003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.607029 0.000000 0.392971 MOTIF CACMTGG DREME-35 # Word RC Word Pos Neg P-value E-value # BEST CACMTGG CCAKGTG 862 659 7.6e-008 3.1e-003 # CACCTGG CCAGGTG 421 314 4.1e-005 1.6e+000 # CACATGG CCATGTG 446 348 2.6e-004 1.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 873 E= 3.1e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.514318 0.485682 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TACGKA DREME-36 # Word RC Word Pos Neg P-value E-value # BEST TACGKA TMCGTA 282 176 3.8e-007 1.5e-002 # TACGTA TACGTA 101 51 3.0e-005 1.2e+000 # TACGGA TCCGTA 184 125 4.6e-004 1.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 283 E= 1.5e-002 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.650177 0.349823 1.000000 0.000000 0.000000 0.000000 MOTIF CTGCTTYC DREME-37 # Word RC Word Pos Neg P-value E-value # BEST CTGCTTYC GRAAGCAG 187 102 3.1e-007 1.2e-002 # CTGCTTCC GGAAGCAG 111 53 3.4e-006 1.4e-001 # CTGCTTTC GAAAGCAG 76 49 9.8e-003 3.9e+002 letter-probability matrix: alength= 4 w= 8 nsites= 187 E= 1.2e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.593583 0.000000 0.406417 0.000000 1.000000 0.000000 0.000000 MOTIF GCCACCGY DREME-38 # Word RC Word Pos Neg P-value E-value # BEST GCCACCGY RCGGTGGC 63 19 5.6e-007 2.3e-002 # GCCACCGC GCGGTGGC 36 10 7.8e-005 3.1e+000 # GCCACCGT ACGGTGGC 27 9 2.0e-003 7.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 64 E= 2.3e-002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.578125 0.000000 0.421875 # Stopping reason: E-value threshold exceeded # Running time: 5305.03 seconds