Invoking:
  getsize intersection_memechip_out/intersection.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.078776
Invoking:
  fasta-most -min 50 < intersection_memechip_out/intersection.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.113711
Invoking:
  fasta-center -dna -len 100 < intersection_memechip_out/intersection.fa 1> intersection_memechip_out/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.142195
Invoking:
  fasta-shuffle-letters intersection_memechip_out/seqs-centered intersection_memechip_out/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.057306
Invoking:
  fasta-subsample intersection_memechip_out/seqs-centered 600 -rest intersection_memechip_out/seqs-discarded -seed 1 1> intersection_memechip_out/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.112351
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 intersection_memechip_out/intersection.fa intersection_memechip_out/background
Finished invoke:
  name: bg  status: 0  time: 0.054399
Invoking:
  meme intersection_memechip_out/seqs-sampled -oc intersection_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile intersection_memechip_out/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 845.02321
Invoking:
  dreme -v 1 -oc intersection_memechip_out/dreme_out -png -dna -p intersection_memechip_out/seqs-centered -n intersection_memechip_out/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 176.186436
Invoking:
  centrimo -seqlen 210 -verbosity 1 -oc intersection_memechip_out/centrimo_out -bfile intersection_memechip_out/background intersection_memechip_out/intersection.fa intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.483744
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 intersection_memechip_out/combined.meme intersection_memechip_out/combined.meme 1> intersection_memechip_out/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.501715
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_1 -bgfile intersection_memechip_out/background -primary MATTTGCATAWSAAW intersection_memechip_out/intersection.fa intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.45772
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_2 -bgfile intersection_memechip_out/background -primary CRTGAAGAAGCTGGCCRCCCCACCCTAATC intersection_memechip_out/intersection.fa intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.379615
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_3 -bgfile intersection_memechip_out/background -primary CAGGWR intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.260266
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_4 -bgfile intersection_memechip_out/background -primary AAAGRVA intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.302871
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_5 -bgfile intersection_memechip_out/background -primary KCYSBCYSMVGSCYSCNHCCBGGVSGCB intersection_memechip_out/intersection.fa intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.503927
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_6 -bgfile intersection_memechip_out/background -primary TATTCAW intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.293444
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_7 -bgfile intersection_memechip_out/background -primary AAWGCGC intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.279024
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_8 -bgfile intersection_memechip_out/background -primary CCCCDCCC intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.295105
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_9 -bgfile intersection_memechip_out/background -primary RGAGA intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.303633
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_10 -bgfile intersection_memechip_out/background -primary ACTGRGTC intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.30754
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_11 -bgfile intersection_memechip_out/background -primary GRAATGCA intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 1.283152
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_12 -bgfile intersection_memechip_out/background -primary AMCACG intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.54801
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_13 -bgfile intersection_memechip_out/background -primary AMATTCC intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.261679
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_1 --bgfile intersection_memechip_out/background --motif MATTTGCATAWSAAW intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.508853
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_2 --bgfile intersection_memechip_out/background --motif CRTGAAGAAGCTGGCCRCCCCACCCTAATC intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.465862
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_3 --bgfile intersection_memechip_out/background --motif CAGGWR intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.381622
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_4 --bgfile intersection_memechip_out/background --motif AAAGRVA intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.291989
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_5 --bgfile intersection_memechip_out/background --motif KCYSBCYSMVGSCYSCNHCCBGGVSGCB intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.502572
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_6 --bgfile intersection_memechip_out/background --motif TATTCAW intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.338596
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_7 --bgfile intersection_memechip_out/background --motif AAWGCGC intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.357413
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_8 --bgfile intersection_memechip_out/background --motif CCCCDCCC intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.385205
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_9 --bgfile intersection_memechip_out/background --motif RGAGA intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.287405
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_10 --bgfile intersection_memechip_out/background --motif ACTGRGTC intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.315274
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_11 --bgfile intersection_memechip_out/background --motif GRAATGCA intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo11  status: 0  time: 1.191558
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_12 --bgfile intersection_memechip_out/background --motif AMCACG intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.325478
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_13 --bgfile intersection_memechip_out/background --motif AMATTCC intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.332938
Writing output
Invoking:
  meme-chip_html_to_tsv intersection_memechip_out/meme-chip.html intersection_memechip_out/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.205668
Done