******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= cutrun_memechip_out/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:94755202-94755302 1.0000 100 chr2:14817079-14817179 1.0000 100 chr7:127808548-127808648 1.0000 100 chr17:49123298-49123398 1.0000 100 chr3:183958040-183958140 1.0000 100 chr10:110357772-11035787 1.0000 100 chr13:104904567-10490466 1.0000 100 chrX:45314807-45314907 1.0000 100 chr6:108879100-108879200 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chr2:229372485-229372585 1.0000 100 chr13:100847586-10084768 1.0000 100 chr12:113229057-11322915 1.0000 100 chr16:19991892-19991992 1.0000 100 chr1:11538927-11539027 1.0000 100 chr7:82071297-82071397 1.0000 100 chr14:54033869-54033969 1.0000 100 chr14:89444028-89444128 1.0000 100 chr20:36529674-36529774 1.0000 100 chr6:2989505-2989605 1.0000 100 chr2:16244975-16245075 1.0000 100 chr21:15988346-15988446 1.0000 100 chr12:53610661-53610761 1.0000 100 chr1:119471376-119471476 1.0000 100 chr15:53149905-53150005 1.0000 100 chr9:104295558-104295658 1.0000 100 chr4:32685482-32685582 1.0000 100 chr20:10332770-10332870 1.0000 100 chr13:70968023-70968123 1.0000 100 chr3:167407667-167407767 1.0000 100 chrX:113281487-113281587 1.0000 100 chr2:50424064-50424164 1.0000 100 chr13:93978914-93979014 1.0000 100 chr10:115105411-11510551 1.0000 100 chr8:144183162-144183262 1.0000 100 chr5:120143444-120143544 1.0000 100 chr11:22359014-22359114 1.0000 100 chr18:45087312-45087412 1.0000 100 chr8:122598509-122598609 1.0000 100 chr6:87825026-87825126 1.0000 100 chr10:124777091-12477719 1.0000 100 chr13:84287989-84288089 1.0000 100 chr4:41364911-41365011 1.0000 100 chr1:147751570-147751670 1.0000 100 chr8:125976190-125976290 1.0000 100 chr8:77599234-77599334 1.0000 100 chr8:32314721-32314821 1.0000 100 chr1:161066817-161066917 1.0000 100 chr1:159157898-159157998 1.0000 100 chr17:40480958-40481058 1.0000 100 chr2:204397591-204397691 1.0000 100 chr1:238543294-238543394 1.0000 100 chr17:35462655-35462755 1.0000 100 chr6:85620478-85620578 1.0000 100 chr6:159274437-159274537 1.0000 100 chr4:134052945-134053045 1.0000 100 chr3:57818397-57818497 1.0000 100 chr2:123413045-123413145 1.0000 100 chr10:108294784-10829488 1.0000 100 chr11:27741759-27741859 1.0000 100 chr2:55246759-55246859 1.0000 100 chr1:169336877-169336977 1.0000 100 chr17:30228539-30228639 1.0000 100 chr6:22250362-22250462 1.0000 100 chr6:25899185-25899285 1.0000 100 chr18:61783987-61784087 1.0000 100 chr9:29325580-29325680 1.0000 100 chr10:91847324-91847424 1.0000 100 chr6:126593598-126593698 1.0000 100 chr2:85685862-85685962 1.0000 100 chr6:104570722-104570822 1.0000 100 chr2:79738416-79738516 1.0000 100 chr16:51474163-51474263 1.0000 100 chr6:10588060-10588160 1.0000 100 chr12:86853211-86853311 1.0000 100 chr3:101249078-101249178 1.0000 100 chr6:33779378-33779478 1.0000 100 chr10:65473017-65473117 1.0000 100 chr12:119418210-11941831 1.0000 100 chr1:81878478-81878578 1.0000 100 chr2:200733237-200733337 1.0000 100 chr2:158616162-158616262 1.0000 100 chr1:26735866-26735966 1.0000 100 chr3:21641363-21641463 1.0000 100 chr14:96414317-96414417 1.0000 100 chr5:92906872-92906972 1.0000 100 chr22:37040153-37040253 1.0000 100 chr8:103921906-103922006 1.0000 100 chr10:29429986-29430086 1.0000 100 chr3:15156379-15156479 1.0000 100 chr17:2777332-2777432 1.0000 100 chr6:157112364-157112464 1.0000 100 chr3:149388261-149388361 1.0000 100 chr3:185826658-185826758 1.0000 100 chr6:50796687-50796787 1.0000 100 chr6:106201337-106201437 1.0000 100 chr11:104493815-10449391 1.0000 100 chr12:89746145-89746245 1.0000 100 chr3:162186486-162186586 1.0000 100 chr2:154669036-154669136 1.0000 100 chr5:83776648-83776748 1.0000 100 chr8:132999202-132999302 1.0000 100 chr10:12222608-12222708 1.0000 100 chr10:71327307-71327407 1.0000 100 chrX:70474348-70474448 1.0000 100 chr16:27807233-27807333 1.0000 100 chr1:155246795-155246895 1.0000 100 chr8:93143829-93143929 1.0000 100 chr6:126066767-126066867 1.0000 100 chr12:19156799-19156899 1.0000 100 chr2:5837913-5838013 1.0000 100 chr9:92219104-92219204 1.0000 100 chr11:43975732-43975832 1.0000 100 chr1:82266223-82266323 1.0000 100 chr3:186716299-186716399 1.0000 100 chr1:109772215-109772315 1.0000 100 chr5:92936918-92937018 1.0000 100 chr2:145236558-145236658 1.0000 100 chr12:121124075-12112417 1.0000 100 chr3:65386669-65386769 1.0000 100 chr21:27030508-27030608 1.0000 100 chr17:65748239-65748339 1.0000 100 chr11:6344281-6344381 1.0000 100 chr14:67735064-67735164 1.0000 100 chr2:133897273-133897373 1.0000 100 chr12:89257311-89257411 1.0000 100 chr18:33430686-33430786 1.0000 100 chr6:84568624-84568724 1.0000 100 chr4:16901237-16901337 1.0000 100 chr16:7296456-7296556 1.0000 100 chr6:92050689-92050789 1.0000 100 chr15:88406338-88406438 1.0000 100 chr6:26199271-26199371 1.0000 100 chr6:18752236-18752336 1.0000 100 chr2:68546783-68546883 1.0000 100 chr7:23028498-23028598 1.0000 100 chr21:43014290-43014390 1.0000 100 chr7:26775495-26775595 1.0000 100 chr22:26759910-26760010 1.0000 100 chr10:21817827-21817927 1.0000 100 chr15:49620951-49621051 1.0000 100 chr15:89950462-89950562 1.0000 100 chr5:12330778-12330878 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme cutrun_memechip_out/seqs-sampled -oc cutrun_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile cutrun_memechip_out/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 596 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59600 N= 596 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.283 C 0.217 G 0.217 T 0.283 Background letter frequencies (from cutrun_memechip_out/background): A 0.287 C 0.213 G 0.213 T 0.287 ******************************************************************************** ******************************************************************************** MOTIF GSHGCTGTCCRTGGTGCTGAA MEME-1 width = 21 sites = 40 llr = 769 E-value = 1.1e-134 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSHGCTGTCCRTGGTGCTGAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2131::::::52:::1:::98 pos.-specific C 1332a:2:aa11:::3a::11 probability G 75:7::8:::31aa:6::a11 matrix T 12411a:a::16::a1:a1:: bits 2.2 * 2.0 * ** * * * 1.8 * ** ** *** 1.6 ** *** *** *** Relative 1.3 ****** *** **** Entropy 1.1 ****** *** **** (27.8 bits) 0.9 ******* *** ***** 0.7 * ******* ********* 0.4 ********** ********** 0.2 ********************* 0.0 --------------------- Multilevel GGTGCTGTCCATGGTGCTGAA consensus ACC C GA C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSHGCTGTCCRTGGTGCTGAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr17:77290449-77290549 - 29 4.15e-12 CCACCCGCAG GTCGCTGTCCGTGGTGCTGAA CTCCTGCCTT chr22:45371346-45371446 + 42 5.05e-12 GGCTGCCCTG AGTGCTGTCCGTGGTGCTGAA CCAGCAGGGC chr16:27807233-27807333 + 72 5.62e-12 CAATCACCCA GCCGCTGTCCGAGGTGCTGAA AGCCTCTC chr4:8581862-8581962 - 42 6.77e-12 GCGCAACCGC GGTGCTGTCCAGGGTGCTGAA TGCGCTCACC chr1:37485989-37486089 + 17 9.18e-12 CCCGGCCCTG GCTGCTCTCCGTGGTGCTGAA CACAGAGGTT chr11:122852380-12285248 + 48 1.03e-11 GGCGGGGCGG GGAGCTGTCCGCGGTGCTGAA CACCACCGGC chr16:10989102-10989202 - 72 1.03e-11 CAGACGTG GGAGCTGTCCGTGGTGCTGAC GGGAGGGCAG chr16:49160863-49160963 - 12 1.61e-11 ATGGGGTGTT GGTCCTGTCCATGGTCCTGAA GCCCTCAAAC chr19:4172753-4172853 - 7 2.47e-11 TCCGCCCGCC GCCGCTCTCCAAGGTGCTGAA GTCGTG chr5:151625750-151625850 + 12 2.85e-11 ACGTGGTTCT GCTGCTGTCCGTGGTACTGAA CTGTGTCAGA chr14:78986103-78986203 + 47 4.72e-11 AGTTGGGGGT GGACCTCTCCATGGTGCTGAA ACATCCCCTG chr12:119950624-11995072 - 10 5.33e-11 CCTAATGTTT GTAGCTGTCCACGGTGCTGAA ACATCACAG chr19:5403935-5404035 + 58 6.75e-11 CCAGGGCTGT GTCGCTGTCCGTGGTACTGAA CGGTGCTGGT chr10:132722324-13272242 - 23 6.75e-11 TGGGGCCGGG ACTGCTGTCCATGGTGCTGAC GCAGAACTTC chr14:105070997-10507109 - 9 7.74e-11 GCGCGCACCA GGAGCTGTCCGCGGTGCTGAC CGCAGGCG chr10:59908377-59908477 - 70 1.56e-10 CTGGCAGGAT ACAGCTGTCCAAGGTCCTGAA ACTCTTTCTT chr14:98047158-98047258 - 38 1.72e-10 AGGTCACACC CCTGCTGTCCCTGGTGCTGAA TTTAGCCTGT chr4:119590246-119590346 - 32 1.93e-10 TGGAGTGCAG GGAGCTGTCCATGGTACTGAG CAGTTCTCAG chr22:37040153-37040253 + 59 2.96e-10 GTAGTTGGAA GATGCTCTCCAAGGTGCTGAA GCAAGTGGGG chr2:79738416-79738516 + 18 3.27e-10 AGCACGCGGT GTCACTGTCCGTGGTCCTGAA ACATGGTTGC chr15:88406338-88406438 + 28 3.64e-10 CAGGGGGTTG TTTGCTGTCCCTGGTGCTGAA AACATACACC chr10:133152562-13315266 - 79 3.64e-10 C AGCGCTGTCCGCGGTACTGAA ACTACCTCAT chrY:16343484-16343584 - 43 3.64e-10 GGGACTGCTC TCTGCTGTCCCTGGTCCTGAA AGTTGAATAT chr8:144183162-144183262 + 16 4.04e-10 AACATCCCGT GCCCCTGTCCAAGGTGCTGAG CAGACGACGC chr16:7296456-7296556 - 51 4.50e-10 GTGCTACGTA GGCGCTGTCCTTGGTGCTGAT ACCACCGCAG chr10:105025384-10502548 + 53 4.50e-10 GGACGGCTGG GGAGCTGTCCATGGTCTTGAA GTGTAACTGA chr1:11533399-11533499 + 32 5.47e-10 GCTGCCAGCA GCCACTGTCCATGGTTCTGAA ACACCCCAGG chr4:175749609-175749709 - 44 5.47e-10 CATACTGCGG GGAGCTGTCTAAGGTGCTGAA GCTTCCCAAG chr10:106584054-10658415 + 78 9.70e-10 GGAGgtgctg agcgctgtcccaggtgctgga ga chr6:105335148-105335248 - 40 1.17e-09 GGGCACGTGC ATTACTGTCCATGGTCCTGAA TTTGCTGAAA chr5:161316866-161316966 - 36 1.17e-09 GGTCTAGTTA GGTGCTCTCCAAGGTCCTTAA ACACTTCAAA chr1:50774228-50774328 - 17 1.40e-09 GCAGCACCAT GGAGCTATCCATGGTTCTGAA ACAGCCTCTG chr2:14817079-14817179 - 33 1.53e-09 AAAATCAAAA GGAGCTCTCCATGGTCCTGCC TTGGGAATTT chr3:183958040-183958140 + 76 1.08e-08 GCTTCCTCTG GGTGTTGTCCAGAGTGCTGAA TTTC chr17:32883304-32883404 - 73 1.35e-08 GCCACGA AACTCTGTCCATGGTTCTGAA CCGTCATACC chr20:36529674-36529774 + 29 4.06e-08 ggcTGGCGCT GTCCTCCTCCGTGGTGCTGAA ACCGGGAGGA chr11:23994578-23994678 + 53 2.17e-07 aatgactttg agttctgtcctttgtcctgca cttgtgaata chr13:43700491-43700591 - 56 2.84e-07 TGATGTGTCA AGCCCTGTGCCAGGTCCTGGG GTAAGTACAA chr17:61600205-61600305 - 43 3.00e-07 GCCCGGGAGC TGTCCACGCCTTGGTGCTGAA AGAAGCCGCG chr1:26735866-26735966 + 21 3.70e-07 TTGGGTTCCT CCTGCTCTCCAGGGAGCTTAC CTGGGGCTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSHGCTGTCCRTGGTGCTGAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:77290449-77290549 4.1e-12 28_[-1]_51 chr22:45371346-45371446 5e-12 41_[+1]_38 chr16:27807233-27807333 5.6e-12 71_[+1]_8 chr4:8581862-8581962 6.8e-12 41_[-1]_38 chr1:37485989-37486089 9.2e-12 16_[+1]_63 chr11:122852380-12285248 1e-11 47_[+1]_32 chr16:10989102-10989202 1e-11 71_[-1]_8 chr16:49160863-49160963 1.6e-11 11_[-1]_68 chr19:4172753-4172853 2.5e-11 6_[-1]_73 chr5:151625750-151625850 2.8e-11 11_[+1]_68 chr14:78986103-78986203 4.7e-11 46_[+1]_33 chr12:119950624-11995072 5.3e-11 9_[-1]_70 chr19:5403935-5404035 6.7e-11 57_[+1]_22 chr10:132722324-13272242 6.7e-11 22_[-1]_57 chr14:105070997-10507109 7.7e-11 8_[-1]_71 chr10:59908377-59908477 1.6e-10 69_[-1]_10 chr14:98047158-98047258 1.7e-10 37_[-1]_42 chr4:119590246-119590346 1.9e-10 31_[-1]_48 chr22:37040153-37040253 3e-10 58_[+1]_21 chr2:79738416-79738516 3.3e-10 17_[+1]_62 chr15:88406338-88406438 3.6e-10 27_[+1]_52 chr10:133152562-13315266 3.6e-10 78_[-1]_1 chrY:16343484-16343584 3.6e-10 42_[-1]_37 chr8:144183162-144183262 4e-10 15_[+1]_64 chr16:7296456-7296556 4.5e-10 50_[-1]_29 chr10:105025384-10502548 4.5e-10 52_[+1]_27 chr1:11533399-11533499 5.5e-10 31_[+1]_48 chr4:175749609-175749709 5.5e-10 43_[-1]_36 chr10:106584054-10658415 9.7e-10 77_[+1]_2 chr6:105335148-105335248 1.2e-09 39_[-1]_40 chr5:161316866-161316966 1.2e-09 35_[-1]_44 chr1:50774228-50774328 1.4e-09 16_[-1]_63 chr2:14817079-14817179 1.5e-09 32_[-1]_47 chr3:183958040-183958140 1.1e-08 75_[+1]_4 chr17:32883304-32883404 1.4e-08 72_[-1]_7 chr20:36529674-36529774 4.1e-08 28_[+1]_51 chr11:23994578-23994678 2.2e-07 52_[+1]_27 chr13:43700491-43700591 2.8e-07 55_[-1]_24 chr17:61600205-61600305 3e-07 42_[-1]_37 chr1:26735866-26735966 3.7e-07 20_[+1]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSHGCTGTCCRTGGTGCTGAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSHGCTGTCCRTGGTGCTGAA width=21 seqs=40 chr17:77290449-77290549 ( 29) GTCGCTGTCCGTGGTGCTGAA 1 chr22:45371346-45371446 ( 42) AGTGCTGTCCGTGGTGCTGAA 1 chr16:27807233-27807333 ( 72) GCCGCTGTCCGAGGTGCTGAA 1 chr4:8581862-8581962 ( 42) GGTGCTGTCCAGGGTGCTGAA 1 chr1:37485989-37486089 ( 17) GCTGCTCTCCGTGGTGCTGAA 1 chr11:122852380-12285248 ( 48) GGAGCTGTCCGCGGTGCTGAA 1 chr16:10989102-10989202 ( 72) GGAGCTGTCCGTGGTGCTGAC 1 chr16:49160863-49160963 ( 12) GGTCCTGTCCATGGTCCTGAA 1 chr19:4172753-4172853 ( 7) GCCGCTCTCCAAGGTGCTGAA 1 chr5:151625750-151625850 ( 12) GCTGCTGTCCGTGGTACTGAA 1 chr14:78986103-78986203 ( 47) GGACCTCTCCATGGTGCTGAA 1 chr12:119950624-11995072 ( 10) GTAGCTGTCCACGGTGCTGAA 1 chr19:5403935-5404035 ( 58) GTCGCTGTCCGTGGTACTGAA 1 chr10:132722324-13272242 ( 23) ACTGCTGTCCATGGTGCTGAC 1 chr14:105070997-10507109 ( 9) GGAGCTGTCCGCGGTGCTGAC 1 chr10:59908377-59908477 ( 70) ACAGCTGTCCAAGGTCCTGAA 1 chr14:98047158-98047258 ( 38) CCTGCTGTCCCTGGTGCTGAA 1 chr4:119590246-119590346 ( 32) GGAGCTGTCCATGGTACTGAG 1 chr22:37040153-37040253 ( 59) GATGCTCTCCAAGGTGCTGAA 1 chr2:79738416-79738516 ( 18) GTCACTGTCCGTGGTCCTGAA 1 chr15:88406338-88406438 ( 28) TTTGCTGTCCCTGGTGCTGAA 1 chr10:133152562-13315266 ( 79) AGCGCTGTCCGCGGTACTGAA 1 chrY:16343484-16343584 ( 43) TCTGCTGTCCCTGGTCCTGAA 1 chr8:144183162-144183262 ( 16) GCCCCTGTCCAAGGTGCTGAG 1 chr16:7296456-7296556 ( 51) GGCGCTGTCCTTGGTGCTGAT 1 chr10:105025384-10502548 ( 53) GGAGCTGTCCATGGTCTTGAA 1 chr1:11533399-11533499 ( 32) GCCACTGTCCATGGTTCTGAA 1 chr4:175749609-175749709 ( 44) GGAGCTGTCTAAGGTGCTGAA 1 chr10:106584054-10658415 ( 78) AGCGCTGTCCCAGGTGCTGGA 1 chr6:105335148-105335248 ( 40) ATTACTGTCCATGGTCCTGAA 1 chr5:161316866-161316966 ( 36) GGTGCTCTCCAAGGTCCTTAA 1 chr1:50774228-50774328 ( 17) GGAGCTATCCATGGTTCTGAA 1 chr2:14817079-14817179 ( 33) GGAGCTCTCCATGGTCCTGCC 1 chr3:183958040-183958140 ( 76) GGTGTTGTCCAGAGTGCTGAA 1 chr17:32883304-32883404 ( 73) AACTCTGTCCATGGTTCTGAA 1 chr20:36529674-36529774 ( 29) GTCCTCCTCCGTGGTGCTGAA 1 chr11:23994578-23994678 ( 53) AGTTCTGTCCTTTGTCCTGCA 1 chr13:43700491-43700591 ( 56) AGCCCTGTGCCAGGTCCTGGG 1 chr17:61600205-61600305 ( 43) TGTCCACGCCTTGGTGCTGAA 1 chr1:26735866-26735966 ( 21) CCTGCTCTCCAGGGAGCTTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSHGCTGTCCRTGGTGCTGAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 47680 bayes= 11.162 E= 1.1e-134 -35 -209 161 -193 -252 37 123 -71 -6 61 -1197 48 -193 -51 176 -252 -1197 215 -1197 -252 -352 -309 -1197 173 -352 8 181 -1197 -1197 -1197 -309 177 -1197 219 -309 -1197 -1197 219 -1197 -352 80 -77 49 -193 -35 -109 -151 107 -352 -1197 215 -352 -1197 -1197 223 -1197 -352 -1197 -1197 177 -152 23 143 -193 -1197 219 -1197 -352 -1197 -1197 -1197 180 -1197 -1197 215 -252 165 -209 -209 -1197 143 -77 -151 -352 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSHGCTGTCCRTGGTGCTGAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 40 E= 1.1e-134 0.225000 0.050000 0.650000 0.075000 0.050000 0.275000 0.500000 0.175000 0.275000 0.325000 0.000000 0.400000 0.075000 0.150000 0.725000 0.050000 0.000000 0.950000 0.000000 0.050000 0.025000 0.025000 0.000000 0.950000 0.025000 0.225000 0.750000 0.000000 0.000000 0.000000 0.025000 0.975000 0.000000 0.975000 0.025000 0.000000 0.000000 0.975000 0.000000 0.025000 0.500000 0.125000 0.300000 0.075000 0.225000 0.100000 0.075000 0.600000 0.025000 0.000000 0.950000 0.025000 0.000000 0.000000 1.000000 0.000000 0.025000 0.000000 0.000000 0.975000 0.100000 0.250000 0.575000 0.075000 0.000000 0.975000 0.000000 0.025000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.950000 0.050000 0.900000 0.050000 0.050000 0.000000 0.775000 0.125000 0.075000 0.025000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSHGCTGTCCRTGGTGCTGAA MEME-1 regular expression -------------------------------------------------------------------------------- [GA][GC][TCA]GCT[GC]TCC[AG][TA]GGT[GC]CTGAA -------------------------------------------------------------------------------- Time 332.96 secs. ******************************************************************************** ******************************************************************************** MOTIF CYCYCYCYCYCYCYCTCYBYC MEME-2 width = 21 sites = 113 llr = 1192 E-value = 8.5e-080 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCYCYCYCYCYCYCTCYBYC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1::11::2:::::1::22: pos.-specific C 667485547574767266448 probability G 31:11:121:213:122:21: matrix T 132524242415:41524232 bits 2.2 2.0 1.8 1.6 Relative 1.3 * Entropy 1.1 * * * * * (15.2 bits) 0.9 * * * * * *** ** * 0.7 ***** * ***** ** * 0.4 *************** ** * 0.2 ********************* 0.0 --------------------- Multilevel CCCTCCCTCCCTCCCTCCCCC consensus GT C TTCTTGCGT C TGT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCYCYCYCYCYCYCTCYBYC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr2:200733237-200733337 + 54 2.05e-10 TAGAACtctt ccctccctccctccctccctt ccttccttcc chr20:36529674-36529774 - 1 5.13e-10 GACAGCGCCA GCCCCCCCCCCGCCCCCCGCC chr3:57164921-57165021 + 3 7.88e-10 TC CCCTCCCCCACCCCCTCCTAC CTCAGCTGTT chr12:119418210-11941831 - 78 9.73e-10 TC CCCCCTCTCCGTCTCTCCTCC TCCCCACCAA chr1:147751570-147751670 - 10 1.20e-09 CTCTCTCTCT CCCTCTCTCTCTCTCTCTCTC TCTCTCTCT chr12:113229057-11322915 - 68 1.80e-09 CTCTCTCTCT CTCTCTCTCTCTCTCTCTCCC TTCTCCCTTC chr3:164913432-164913532 - 56 2.67e-09 GCAGTCCCCT CCCCCTCCCACCCCCCTCCCC CGCACCTTCT chr5:161494968-161495068 - 8 4.71e-09 CAGGAACAGG GCCGCCCGCCGCCCCTCCCCC CAGCTCC chr3:15156379-15156479 + 8 5.66e-09 ccttcct ctctctctctctctctctctc tctcttgctc chr11:107460737-10746083 + 3 5.66e-09 ct ctctctctctctctctctctc tctctctctc chr2:213951103-213951203 - 8 9.70e-09 GTGAAGGGTG CCCTCTTTTCCTCCCCCCTCC ACTCCCA chr15:44579743-44579843 - 75 1.37e-08 GCTCG CTCTCTTTCTCTCTCCCCGCC CAGAGTTTTC chr5:92936918-92937018 - 40 2.27e-08 TCCTTCCATA CCCTCCTCCTCTCTCCCCTCT CTCCAAGGGG chr6:22878054-22878154 - 6 2.68e-08 AGTAAATGTG CTCTCTTTCTCTCTCTCCTTC ATGCC chr12:86853211-86853311 + 31 5.89e-08 cacagCTTTA CCCGCCCCGCCCCCCACCCAC CCACATGCGC chr17:61600205-61600305 + 11 7.98e-08 cccgcccagc ggccccctccccgccgccggc gcgcggcTTC chr11:20692998-20693098 - 25 9.26e-08 ATACTCCTAC CTCTCCACCACCCCCCCCATC AATCTGTAAA chr12:53610661-53610761 - 60 1.07e-07 ACCCTTCTTT CCCCCCTCTCCTCTCTCCTTT TTCTTTGGGT chr11:115374839-11537493 - 4 1.24e-07 TTGCATACGC CCCTCCCCTTGGCCCCGCCCC TAG chr1:23924710-23924810 + 45 1.24e-07 TCTGTTTCCT GCCTTTCCCTCCCCCACCCAC CTGGGCACAG chr11:129085489-12908558 - 39 1.65e-07 TGTGTCCAGA CCCCCTCTGCCTCTCTCTAAC GAGCATTTAG chr19:4172753-4172853 - 28 1.65e-07 GCCACGCCTG CCTCCCCGCACTCCGCCCGCC GCCGCTCTCC chr3:186682688-186682788 + 30 1.90e-07 AAGTCCCAGC CTCTGTCCCCCTCCCTCTGCT TCCTGAATCT chr11:122852380-12285248 - 13 1.90e-07 CCCGCCCCGA GCCTCCCGCACCCTCCCCTCT GCCTCTGGCA chrX:93710658-93710758 - 73 1.90e-07 TAGCCAA GTCTCCTCTTCTCTCCCTCCC ATAAACTGTC chr11:83360512-83360612 - 61 2.18e-07 ATTCCCTTAT GCCTCCCTTCCTCCTACCCTC CAATCTCCTG chr6:22250362-22250462 + 42 2.51e-07 TAGGAATCAC CCCTCCCTCTTCCCCCTCATC CCCTTCAAAA chr16:73517149-73517249 - 60 2.87e-07 TGGGTCATTA GCTCCCCCGCCCCCCACTCTC CCTTTTTCTT chr20:10199206-10199306 - 1 4.28e-07 GGGGCGGGAA CTCCCCCTTTCTCCTTTCGCC chr22:30475826-30475926 - 58 4.87e-07 CGGCTAGCCG GCCCCTAGCCCGCCCGGCCCC TCAGCAGCCG chr5:17401390-17401490 + 29 4.87e-07 GAAAGTGAGA CTTTCTCTTTCTCTCTCTCTC TATTTTTCCA chr3:65386669-65386769 + 8 6.30e-07 AAAATGA GCCCCGGCTCCTGTCTCCCCC ATCCACTGTA chr20:48310678-48310778 - 23 6.30e-07 CTTTCCCTTT CCCTTTCCCTTTCCCTTTCCC TTTCCTTTTC chr1:202661586-202661686 - 42 6.30e-07 GTCCTATTAA CTTCCTCCCCCTCCTTCTCCT GCCTTATTAA chr11:120827523-12082762 - 61 7.14e-07 TGTTTTGTCA CCTCCTCTCCCTTCCTCCCTT GGCTCCCCTC chr17:30228539-30228639 + 14 9.16e-07 CTCCCTAGGT CCCGCCTTTTCCGCTTCCGCC ACCTCCTACT chr3:186716299-186716399 + 30 1.03e-06 ctggatcctg gcctctccctcctcttcccac tgtggccaac chr10:12222608-12222708 - 80 1.03e-06 . CCCTCTGACCCTCCCGCCTCT TGTGTTGGTG chr1:11538927-11539027 - 23 1.32e-06 CGCAACCCGA GCACTCCGCTCCGCCGCCGCC TTTTATTCGC chr9:91032687-91032787 + 9 1.32e-06 tagccctc tcctctacccgcctcccttcc cagggtaggg chr22:40572580-40572680 - 65 1.32e-06 CTTACCCATC CTCCCACCCTGCCTGGCCTCC GTTTTCTCAT chr11:66185393-66185493 - 42 1.32e-06 CTGCACTTAG GCATCCCTTCCCCCCGTTGCC GGCCCCCAAG chr20:34967898-34967998 - 52 1.48e-06 GGCTCCTCTC CTTCCCCGCTCTGCGGCTGCC TTAGCCTCAC chr1:82266223-82266323 + 25 1.67e-06 GCCCGGACAG CCCTgcggccgccccgccggc ggagccgggg chr12:121124075-12112417 - 7 1.87e-06 TGAGAATAAG GCCCCGCCCCCTCCCCTTAGC GGGCTC chr7:27960554-27960654 + 77 2.10e-06 AGCCTCTGGG CTTCCCCTTCCCCCTTCCAGC AAG chr2:157486970-157487070 - 35 2.10e-06 GCCCATGCTT TCCTCCCACTCCGTCTGCCTC CTGACTGCCC chr1:183385576-183385676 + 31 2.35e-06 TTAGCCTAAG CCACCTCGCCCTGTCTTTACC GCTGTGGTGT chr9:29325580-29325680 + 74 2.63e-06 ccatggaggt ccctcctccccttccttttct tagaaa chr19:36360512-36360612 - 49 2.94e-06 CCCCGCCTAT CCTTTCGCCACTCCCCCCTAC ACCTCTACTC chr6:108879100-108879200 + 33 2.94e-06 TGCGCTGCAA CTTTCCTCCCCCGACGCCTCC TCTTCGCTGG chr18:47087684-47087784 - 80 3.67e-06 . GCTTCCTCCCGGGCCCGCTCC GCAGGCAGCT chr1:95126509-95126609 - 1 3.67e-06 ATTACCATAC CCTCCCTCTTTCCCCTCCAGC chr12:66216753-66216853 - 42 3.67e-06 TCGGGGCTTG GCCTTTACCTGCGCCTCTACC GTGCCGAGCC chrX:153140422-153140522 - 63 3.67e-06 ATCTTCTACC TCCTCACCTTCTCCCTGTTCC GGACCCTGAC chr17:14429118-14429218 - 24 3.67e-06 GCAGAATTCA GGCTCCTCTCCTCCCGCTAGC CTGGTGGTCT chr2:124782113-124782213 - 32 4.09e-06 ATTCTCTCTA CCCCCCGGCTTTCTCTTCCCT TCCCCCCATT chr4:85420221-85420321 - 1 4.09e-06 ACGGTGGTTA CGCCCCCGGCCTGCGCCCGGC chr1:161066817-161066917 + 1 4.55e-06 . ctctctctctctctctgtgtg tgtgtgtgtg chr3:101249078-101249178 + 42 5.62e-06 gactctggca gcctccacccccctcctttat catgcagttg chr11:12701718-12701818 + 22 5.62e-06 AGCTGGGAGC CTGCCTGGCTCGCCCTCCCCC ACTGGGCAGC chr1:159157898-159157998 + 2 6.23e-06 C CCCGCGCGCCCTCTCTCGGTC CTAGCGCCCC chr2:208199057-208199157 - 11 6.91e-06 GGCCTTTAGT CACTCACCCACCCCCTCCGTT TGGAAACTCA chr5:95767164-95767264 - 62 7.65e-06 AGACACGGGA CCATCTATCCCCGCGACTCTC TAGGGAGCTC chr4:183337750-183337850 + 35 7.65e-06 GGCACACGTT GTCTGCATCACTGCCTGCCTC ACACTGGGTT chr22:33471965-33472065 - 67 8.46e-06 TAACTCTTTC CCTTTTACCTTTCCCTCTTCC AGCTGAAACA chr2:229372485-229372585 - 19 9.35e-06 AGACAAAAGG CTTCCTCTCCCTCCTGTCAGC TCTTCCCAGG chr9:34458349-34458449 + 61 9.35e-06 TTAGTGGAGA CTCGCTCGCCGCGCGCCCAAC CCCGCCTCCT chr20:40669475-40669575 + 77 1.03e-05 CGTTTTGGGG TTCTCTCTCCGGCCCTGTGAC TTT chr10:65473017-65473117 - 58 1.14e-05 GGGGACACAA TCTCCCTTCCCCCTCTCCCAG GCTGTGGCAG chr5:147777356-147777456 - 55 1.14e-05 TCTCCCAGTC CTTTATCTCCCCCTCTCTGAC CTGCTGTGTT chr7:127808548-127808648 + 12 1.14e-05 GGTGCTCTCC GCCCCCTTGATCGCCGCTCTC GGTTTTCAGC chr3:38682427-38682527 + 28 1.25e-05 TCATTCTCTA CTCTTAATCTCCGCCTCCAGC GATCTTGCTA chr9:27771588-27771688 + 13 1.38e-05 CATTCACATT CTCTCTCTCTCTTTGTTTTCC TATTTAGTTG chr9:140772769-140772869 + 63 1.38e-05 CTCGCCTGGG GGCGCTCGGCCCCCTCCCCTC GGGGCCCTGG chr3:117118512-117118612 - 73 1.38e-05 TTCTTTA CTCCCCTCTGCCCTGACCTCC TGCATTCTGA chr15:75746132-75746232 - 38 1.52e-05 TGAGGCGCAA GGTCCCGCCCCCGCCTCTGAT TGGTGGGGCG chr13:86182441-86182541 + 45 1.83e-05 ttcccgccct cttctccttacccttgccccc acatgtgcct chr11:119461400-11946150 - 15 1.83e-05 GTTATTTAAA CTACCTTCCCTTCTCCTCCAC AAATGTGCAT chr13:53422565-53422665 + 70 1.83e-05 TTTGCTTTTT CCCCCTTTTCTTGTCAGCACC CTGCATGTAG chr17:77188563-77188663 + 39 2.01e-05 GCCCTGCACA CTCTCACTGGCTCTGTCTCCC TTTAGGAGAT chr21:39286216-39286316 + 72 2.20e-05 AGCTCTGGGC GCCCTCTCGAGCGTCGCCGTC AGGGAGTT chr2:6780211-6780311 + 68 2.20e-05 CATGCAAGAG GCATCCTCCTCTCCTGTTCAC TGAATGCATT chr19:18632758-18632858 + 31 2.20e-05 TCAACACGCG CACCCCTCCAGGCCCCGCCTC CATAGTATTA chrX:70474348-70474448 + 79 2.41e-05 CCTCACCAGG GCTGAtctctctctctctctc t chr9:134079642-134079742 - 57 2.41e-05 TTTTGGAAGG TTCTGTCTTTCTCTCTTCTCC TTCTGGGACT chr1:26735866-26735966 - 70 2.64e-05 TGTAAAGAAT TCTTCCTTCTTTCCTCCCTCC AAACCTGTGT chr16:9059759-9059859 - 8 2.64e-05 GAAGTGACTG GGCTCTCCCCTGCTCACCTCT GTGGTCT chr6:118227812-118227912 + 1 3.15e-05 . GCCGGCACCTGTCTCGGCGTC CTGCCGCTGT chr1:37485989-37486089 + 55 3.15e-05 GTTGGGGTGT CTCTCAATCTCCCTGGCTCTT GCTGAACCAC chr1:155246795-155246895 + 58 3.74e-05 CCTGGCTCAG GCTGCGCTCCCCGCCTTCTTT GCTAAGCCAC chr14:105070997-10507109 - 31 3.74e-05 CTGGACCCCG GGCTCCTGGCCCGCGCGCACC AGGAGCTGTC chr10:132722324-13272242 - 55 3.74e-05 AGTGATGTGG CCCCTCCCCAGGTCCTGCGGC CTGGGGCCGG chr3:185911806-185911906 + 36 4.08e-05 ACTTGTAATC CTCTGCACCCCCGCCCTTGAT GTCTCGATCC chr19:6767444-6767544 + 43 4.08e-05 GGAGCACCAC GCATCCTTTCCTGCCAGTGGC CCCTCCCCTT chr1:230562015-230562115 - 56 4.43e-05 GCGGGATCGG CCCGCACTCCGTCCGCGGGCC CGGACCGCTG chr22:41347193-41347293 - 50 4.82e-05 GAAATGAAAC CCTTTACTCCGCGCCTCGACC ATCCTCGGGC chr17:26368104-26368204 - 29 4.82e-05 ATTTTTCTTT CGCCTCTCTCCTCTTTTCTTC TTCTTCTTTT chr14:21776372-21776472 - 38 4.82e-05 CTGCTTTGGA GTCCTTCTCCCTCTGTCTCAG TACAGGGGAG chr21:43014290-43014390 - 25 5.24e-05 TTACTTTCAC TCCCCTATCATTGCCGCCCTT GCAATTTGTT chr21:22033935-22034035 - 28 5.24e-05 AGCATGTTTT TCCTCCTCCACTGACTTCATC AACTTAACTT chr17:47841480-47841580 - 6 5.69e-05 GGGTGTGACG CTCCCCTATTCTGCGTCTTCT CATTG chr1:70876256-70876356 - 62 5.69e-05 CTCCTGAGAG CCACCCGGGCGTCTCTGTGAC CTCAGGCCGG chr2:5865761-5865861 - 57 6.17e-05 AGATCTGCAG TCACTCTTTTCCGTCTCCTTC ATGAGGTCCT chr6:154360513-154360613 + 74 6.69e-05 ACAGCCTGTG CCCTCCGACCGGCAGTCCCTC CATGAT chr5:75379766-75379866 + 22 6.69e-05 GGGGCTGAGG CTCTTTGTCAGCGCCTGCACT TCCTACGTTA chr5:92906872-92906972 - 19 7.24e-05 CATGTGGTTC CGTCCTTCCGCCGTCACTGTC TAGTCTCATC chr19:47947269-47947369 - 38 9.15e-05 TCTTGTGTGC GCCTGTCCTTGCGCGGGTGTC GCTGTGTCTT chrX:33005109-33005209 + 2 1.33e-04 T GCCCGTGTCAGCGTCAGCTTC AGCAGAAGCT chr9:28895288-28895388 + 12 2.04e-04 atacatattc ccatttctgtgccctactcgc aaataataca chr19:10806315-10806415 + 33 2.50e-04 CCTCATAGGG CGCTTGCGCAGGCTCCGCTCC CTGAGCGGCC chr17:77290449-77290549 - 52 3.05e-04 GGCCGCGTGG CTGGCAGCGTCTCCCACCCGC AGGTCGCTGT chr1:155214241-155214341 + 17 8.40e-04 GGCGCGAGAA CTACGCATGCGTGTCGGCGTT TTCCCGCCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCYCYCYCYCYCYCTCYBYC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:200733237-200733337 2.1e-10 53_[+2]_26 chr20:36529674-36529774 5.1e-10 [-2]_79 chr3:57164921-57165021 7.9e-10 2_[+2]_77 chr12:119418210-11941831 9.7e-10 77_[-2]_2 chr1:147751570-147751670 1.2e-09 9_[-2]_70 chr12:113229057-11322915 1.8e-09 67_[-2]_12 chr3:164913432-164913532 2.7e-09 55_[-2]_24 chr5:161494968-161495068 4.7e-09 7_[-2]_72 chr3:15156379-15156479 5.7e-09 7_[+2]_72 chr11:107460737-10746083 5.7e-09 2_[+2]_77 chr2:213951103-213951203 9.7e-09 7_[-2]_72 chr15:44579743-44579843 1.4e-08 74_[-2]_5 chr5:92936918-92937018 2.3e-08 39_[-2]_40 chr6:22878054-22878154 2.7e-08 5_[-2]_74 chr12:86853211-86853311 5.9e-08 30_[+2]_49 chr17:61600205-61600305 8e-08 10_[+2]_69 chr11:20692998-20693098 9.3e-08 24_[-2]_55 chr12:53610661-53610761 1.1e-07 59_[-2]_20 chr11:115374839-11537493 1.2e-07 3_[-2]_76 chr1:23924710-23924810 1.2e-07 44_[+2]_35 chr11:129085489-12908558 1.7e-07 38_[-2]_41 chr19:4172753-4172853 1.7e-07 27_[-2]_52 chr3:186682688-186682788 1.9e-07 29_[+2]_50 chr11:122852380-12285248 1.9e-07 12_[-2]_67 chrX:93710658-93710758 1.9e-07 72_[-2]_7 chr11:83360512-83360612 2.2e-07 60_[-2]_19 chr6:22250362-22250462 2.5e-07 41_[+2]_38 chr16:73517149-73517249 2.9e-07 59_[-2]_20 chr20:10199206-10199306 4.3e-07 [-2]_79 chr22:30475826-30475926 4.9e-07 57_[-2]_22 chr5:17401390-17401490 4.9e-07 28_[+2]_51 chr3:65386669-65386769 6.3e-07 7_[+2]_72 chr20:48310678-48310778 6.3e-07 22_[-2]_57 chr1:202661586-202661686 6.3e-07 41_[-2]_38 chr11:120827523-12082762 7.1e-07 60_[-2]_19 chr17:30228539-30228639 9.2e-07 13_[+2]_66 chr3:186716299-186716399 1e-06 29_[+2]_50 chr10:12222608-12222708 1e-06 79_[-2] chr1:11538927-11539027 1.3e-06 22_[-2]_57 chr9:91032687-91032787 1.3e-06 8_[+2]_71 chr22:40572580-40572680 1.3e-06 64_[-2]_15 chr11:66185393-66185493 1.3e-06 41_[-2]_38 chr20:34967898-34967998 1.5e-06 51_[-2]_28 chr1:82266223-82266323 1.7e-06 24_[+2]_55 chr12:121124075-12112417 1.9e-06 6_[-2]_73 chr7:27960554-27960654 2.1e-06 76_[+2]_3 chr2:157486970-157487070 2.1e-06 34_[-2]_45 chr1:183385576-183385676 2.4e-06 30_[+2]_49 chr9:29325580-29325680 2.6e-06 73_[+2]_6 chr19:36360512-36360612 2.9e-06 48_[-2]_31 chr6:108879100-108879200 2.9e-06 32_[+2]_47 chr18:47087684-47087784 3.7e-06 79_[-2] chr1:95126509-95126609 3.7e-06 [-2]_79 chr12:66216753-66216853 3.7e-06 41_[-2]_38 chrX:153140422-153140522 3.7e-06 62_[-2]_17 chr17:14429118-14429218 3.7e-06 23_[-2]_56 chr2:124782113-124782213 4.1e-06 31_[-2]_48 chr4:85420221-85420321 4.1e-06 [-2]_79 chr1:161066817-161066917 4.5e-06 [+2]_79 chr3:101249078-101249178 5.6e-06 41_[+2]_38 chr11:12701718-12701818 5.6e-06 21_[+2]_58 chr1:159157898-159157998 6.2e-06 1_[+2]_78 chr2:208199057-208199157 6.9e-06 10_[-2]_69 chr5:95767164-95767264 7.7e-06 61_[-2]_18 chr4:183337750-183337850 7.7e-06 34_[+2]_45 chr22:33471965-33472065 8.5e-06 66_[-2]_13 chr2:229372485-229372585 9.4e-06 18_[-2]_61 chr9:34458349-34458449 9.4e-06 60_[+2]_19 chr20:40669475-40669575 1e-05 76_[+2]_3 chr10:65473017-65473117 1.1e-05 57_[-2]_22 chr5:147777356-147777456 1.1e-05 54_[-2]_25 chr7:127808548-127808648 1.1e-05 11_[+2]_68 chr3:38682427-38682527 1.3e-05 27_[+2]_52 chr9:27771588-27771688 1.4e-05 12_[+2]_67 chr9:140772769-140772869 1.4e-05 62_[+2]_17 chr3:117118512-117118612 1.4e-05 72_[-2]_7 chr15:75746132-75746232 1.5e-05 37_[-2]_42 chr13:86182441-86182541 1.8e-05 44_[+2]_35 chr11:119461400-11946150 1.8e-05 14_[-2]_65 chr13:53422565-53422665 1.8e-05 69_[+2]_10 chr17:77188563-77188663 2e-05 38_[+2]_41 chr21:39286216-39286316 2.2e-05 71_[+2]_8 chr2:6780211-6780311 2.2e-05 67_[+2]_12 chr19:18632758-18632858 2.2e-05 30_[+2]_49 chrX:70474348-70474448 2.4e-05 78_[+2]_1 chr9:134079642-134079742 2.4e-05 56_[-2]_23 chr1:26735866-26735966 2.6e-05 69_[-2]_10 chr16:9059759-9059859 2.6e-05 7_[-2]_72 chr6:118227812-118227912 3.1e-05 [+2]_79 chr1:37485989-37486089 3.1e-05 54_[+2]_25 chr1:155246795-155246895 3.7e-05 57_[+2]_22 chr14:105070997-10507109 3.7e-05 30_[-2]_49 chr10:132722324-13272242 3.7e-05 54_[-2]_25 chr3:185911806-185911906 4.1e-05 35_[+2]_44 chr19:6767444-6767544 4.1e-05 42_[+2]_37 chr1:230562015-230562115 4.4e-05 55_[-2]_24 chr22:41347193-41347293 4.8e-05 49_[-2]_30 chr17:26368104-26368204 4.8e-05 28_[-2]_51 chr14:21776372-21776472 4.8e-05 37_[-2]_42 chr21:43014290-43014390 5.2e-05 24_[-2]_55 chr21:22033935-22034035 5.2e-05 27_[-2]_52 chr17:47841480-47841580 5.7e-05 5_[-2]_74 chr1:70876256-70876356 5.7e-05 61_[-2]_18 chr2:5865761-5865861 6.2e-05 56_[-2]_23 chr6:154360513-154360613 6.7e-05 73_[+2]_6 chr5:75379766-75379866 6.7e-05 21_[+2]_58 chr5:92906872-92906972 7.2e-05 18_[-2]_61 chr19:47947269-47947369 9.2e-05 37_[-2]_42 chrX:33005109-33005209 0.00013 1_[+2]_78 chr9:28895288-28895388 0.0002 11_[+2]_68 chr19:10806315-10806415 0.00025 32_[+2]_47 chr17:77290449-77290549 0.00031 51_[-2]_28 chr1:155214241-155214341 0.00084 16_[+2]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCYCYCYCYCYCYCTCYBYC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCYCYCYCYCYCYCTCYBYC width=21 seqs=113 chr2:200733237-200733337 ( 54) CCCTCCCTCCCTCCCTCCCTT 1 chr20:36529674-36529774 ( 1) GCCCCCCCCCCGCCCCCCGCC 1 chr3:57164921-57165021 ( 3) CCCTCCCCCACCCCCTCCTAC 1 chr12:119418210-11941831 ( 78) CCCCCTCTCCGTCTCTCCTCC 1 chr1:147751570-147751670 ( 10) CCCTCTCTCTCTCTCTCTCTC 1 chr12:113229057-11322915 ( 68) CTCTCTCTCTCTCTCTCTCCC 1 chr3:164913432-164913532 ( 56) CCCCCTCCCACCCCCCTCCCC 1 chr5:161494968-161495068 ( 8) GCCGCCCGCCGCCCCTCCCCC 1 chr3:15156379-15156479 ( 8) CTCTCTCTCTCTCTCTCTCTC 1 chr11:107460737-10746083 ( 3) CTCTCTCTCTCTCTCTCTCTC 1 chr2:213951103-213951203 ( 8) CCCTCTTTTCCTCCCCCCTCC 1 chr15:44579743-44579843 ( 75) CTCTCTTTCTCTCTCCCCGCC 1 chr5:92936918-92937018 ( 40) CCCTCCTCCTCTCTCCCCTCT 1 chr6:22878054-22878154 ( 6) CTCTCTTTCTCTCTCTCCTTC 1 chr12:86853211-86853311 ( 31) CCCGCCCCGCCCCCCACCCAC 1 chr17:61600205-61600305 ( 11) GGCCCCCTCCCCGCCGCCGGC 1 chr11:20692998-20693098 ( 25) CTCTCCACCACCCCCCCCATC 1 chr12:53610661-53610761 ( 60) CCCCCCTCTCCTCTCTCCTTT 1 chr11:115374839-11537493 ( 4) CCCTCCCCTTGGCCCCGCCCC 1 chr1:23924710-23924810 ( 45) GCCTTTCCCTCCCCCACCCAC 1 chr11:129085489-12908558 ( 39) CCCCCTCTGCCTCTCTCTAAC 1 chr19:4172753-4172853 ( 28) CCTCCCCGCACTCCGCCCGCC 1 chr3:186682688-186682788 ( 30) CTCTGTCCCCCTCCCTCTGCT 1 chr11:122852380-12285248 ( 13) GCCTCCCGCACCCTCCCCTCT 1 chrX:93710658-93710758 ( 73) GTCTCCTCTTCTCTCCCTCCC 1 chr11:83360512-83360612 ( 61) GCCTCCCTTCCTCCTACCCTC 1 chr6:22250362-22250462 ( 42) CCCTCCCTCTTCCCCCTCATC 1 chr16:73517149-73517249 ( 60) GCTCCCCCGCCCCCCACTCTC 1 chr20:10199206-10199306 ( 1) CTCCCCCTTTCTCCTTTCGCC 1 chr22:30475826-30475926 ( 58) GCCCCTAGCCCGCCCGGCCCC 1 chr5:17401390-17401490 ( 29) CTTTCTCTTTCTCTCTCTCTC 1 chr3:65386669-65386769 ( 8) GCCCCGGCTCCTGTCTCCCCC 1 chr20:48310678-48310778 ( 23) CCCTTTCCCTTTCCCTTTCCC 1 chr1:202661586-202661686 ( 42) CTTCCTCCCCCTCCTTCTCCT 1 chr11:120827523-12082762 ( 61) CCTCCTCTCCCTTCCTCCCTT 1 chr17:30228539-30228639 ( 14) CCCGCCTTTTCCGCTTCCGCC 1 chr3:186716299-186716399 ( 30) GCCTCTCCCTCCTCTTCCCAC 1 chr10:12222608-12222708 ( 80) CCCTCTGACCCTCCCGCCTCT 1 chr1:11538927-11539027 ( 23) GCACTCCGCTCCGCCGCCGCC 1 chr9:91032687-91032787 ( 9) TCCTCTACCCGCCTCCCTTCC 1 chr22:40572580-40572680 ( 65) CTCCCACCCTGCCTGGCCTCC 1 chr11:66185393-66185493 ( 42) GCATCCCTTCCCCCCGTTGCC 1 chr20:34967898-34967998 ( 52) CTTCCCCGCTCTGCGGCTGCC 1 chr1:82266223-82266323 ( 25) CCCTGCGGCCGCCCCGCCGGC 1 chr12:121124075-12112417 ( 7) GCCCCGCCCCCTCCCCTTAGC 1 chr7:27960554-27960654 ( 77) CTTCCCCTTCCCCCTTCCAGC 1 chr2:157486970-157487070 ( 35) TCCTCCCACTCCGTCTGCCTC 1 chr1:183385576-183385676 ( 31) CCACCTCGCCCTGTCTTTACC 1 chr9:29325580-29325680 ( 74) CCCTCCTCCCCTTCCTTTTCT 1 chr19:36360512-36360612 ( 49) CCTTTCGCCACTCCCCCCTAC 1 chr6:108879100-108879200 ( 33) CTTTCCTCCCCCGACGCCTCC 1 chr18:47087684-47087784 ( 80) GCTTCCTCCCGGGCCCGCTCC 1 chr1:95126509-95126609 ( 1) CCTCCCTCTTTCCCCTCCAGC 1 chr12:66216753-66216853 ( 42) GCCTTTACCTGCGCCTCTACC 1 chrX:153140422-153140522 ( 63) TCCTCACCTTCTCCCTGTTCC 1 chr17:14429118-14429218 ( 24) GGCTCCTCTCCTCCCGCTAGC 1 chr2:124782113-124782213 ( 32) CCCCCCGGCTTTCTCTTCCCT 1 chr4:85420221-85420321 ( 1) CGCCCCCGGCCTGCGCCCGGC 1 chr1:161066817-161066917 ( 1) CTCTCTCTCTCTCTCTGTGTG 1 chr3:101249078-101249178 ( 42) GCCTCCACCCCCCTCCTTTAT 1 chr11:12701718-12701818 ( 22) CTGCCTGGCTCGCCCTCCCCC 1 chr1:159157898-159157998 ( 2) CCCGCGCGCCCTCTCTCGGTC 1 chr2:208199057-208199157 ( 11) CACTCACCCACCCCCTCCGTT 1 chr5:95767164-95767264 ( 62) CCATCTATCCCCGCGACTCTC 1 chr4:183337750-183337850 ( 35) GTCTGCATCACTGCCTGCCTC 1 chr22:33471965-33472065 ( 67) CCTTTTACCTTTCCCTCTTCC 1 chr2:229372485-229372585 ( 19) CTTCCTCTCCCTCCTGTCAGC 1 chr9:34458349-34458449 ( 61) CTCGCTCGCCGCGCGCCCAAC 1 chr20:40669475-40669575 ( 77) TTCTCTCTCCGGCCCTGTGAC 1 chr10:65473017-65473117 ( 58) TCTCCCTTCCCCCTCTCCCAG 1 chr5:147777356-147777456 ( 55) CTTTATCTCCCCCTCTCTGAC 1 chr7:127808548-127808648 ( 12) GCCCCCTTGATCGCCGCTCTC 1 chr3:38682427-38682527 ( 28) CTCTTAATCTCCGCCTCCAGC 1 chr9:27771588-27771688 ( 13) CTCTCTCTCTCTTTGTTTTCC 1 chr9:140772769-140772869 ( 63) GGCGCTCGGCCCCCTCCCCTC 1 chr3:117118512-117118612 ( 73) CTCCCCTCTGCCCTGACCTCC 1 chr15:75746132-75746232 ( 38) GGTCCCGCCCCCGCCTCTGAT 1 chr13:86182441-86182541 ( 45) CTTCTCCTTACCCTTGCCCCC 1 chr11:119461400-11946150 ( 15) CTACCTTCCCTTCTCCTCCAC 1 chr13:53422565-53422665 ( 70) CCCCCTTTTCTTGTCAGCACC 1 chr17:77188563-77188663 ( 39) CTCTCACTGGCTCTGTCTCCC 1 chr21:39286216-39286316 ( 72) GCCCTCTCGAGCGTCGCCGTC 1 chr2:6780211-6780311 ( 68) GCATCCTCCTCTCCTGTTCAC 1 chr19:18632758-18632858 ( 31) CACCCCTCCAGGCCCCGCCTC 1 chrX:70474348-70474448 ( 79) GCTGATCTCTCTCTCTCTCTC 1 chr9:134079642-134079742 ( 57) TTCTGTCTTTCTCTCTTCTCC 1 chr1:26735866-26735966 ( 70) TCTTCCTTCTTTCCTCCCTCC 1 chr16:9059759-9059859 ( 8) GGCTCTCCCCTGCTCACCTCT 1 chr6:118227812-118227912 ( 1) GCCGGCACCTGTCTCGGCGTC 1 chr1:37485989-37486089 ( 55) CTCTCAATCTCCCTGGCTCTT 1 chr1:155246795-155246895 ( 58) GCTGCGCTCCCCGCCTTCTTT 1 chr14:105070997-10507109 ( 31) GGCTCCTGGCCCGCGCGCACC 1 chr10:132722324-13272242 ( 55) CCCCTCCCCAGGTCCTGCGGC 1 chr3:185911806-185911906 ( 36) CTCTGCACCCCCGCCCTTGAT 1 chr19:6767444-6767544 ( 43) GCATCCTTTCCTGCCAGTGGC 1 chr1:230562015-230562115 ( 56) CCCGCACTCCGTCCGCGGGCC 1 chr22:41347193-41347293 ( 50) CCTTTACTCCGCGCCTCGACC 1 chr17:26368104-26368204 ( 29) CGCCTCTCTCCTCTTTTCTTC 1 chr14:21776372-21776472 ( 38) GTCCTTCTCCCTCTGTCTCAG 1 chr21:43014290-43014390 ( 25) TCCCCTATCATTGCCGCCCTT 1 chr21:22033935-22034035 ( 28) TCCTCCTCCACTGACTTCATC 1 chr17:47841480-47841580 ( 6) CTCCCCTATTCTGCGTCTTCT 1 chr1:70876256-70876356 ( 62) CCACCCGGGCGTCTCTGTGAC 1 chr2:5865761-5865861 ( 57) TCACTCTTTTCCGTCTCCTTC 1 chr6:154360513-154360613 ( 74) CCCTCCGACCGGCAGTCCCTC 1 chr5:75379766-75379866 ( 22) CTCTTTGTCAGCGCCTGCACT 1 chr5:92906872-92906972 ( 19) CGTCCTTCCGCCGTCACTGTC 1 chr19:47947269-47947369 ( 38) GCCTGTCCTTGCGCGGGTGTC 1 chrX:33005109-33005209 ( 2) GCCCGTGTCAGCGTCAGCTTC 1 chr9:28895288-28895388 ( 12) CCATTTCTGTGCCCTACTCGC 1 chr19:10806315-10806415 ( 33) CGCTTGCGCAGGCTCCGCTCC 1 chr17:77290449-77290549 ( 52) CTGGCAGCGTCTCCCACCCGC 1 chr1:155214241-155214341 ( 17) CTACGCATGCGTGTCGGCGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCYCYCYCYCYCYCTCYBYC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 47680 bayes= 10.6822 E= 8.5e-080 -1346 154 45 -170 -402 143 -127 15 -156 169 -359 -56 -1346 83 -113 87 -402 182 -142 -93 -185 119 -227 44 -121 129 -101 -21 -302 90 -50 54 -1346 167 -89 -49 -85 111 -301 30 -1346 169 -1 -156 -1346 93 -113 79 -1346 164 45 -269 -343 145 -1346 44 -1346 180 -59 -132 -132 11 -27 74 -1346 160 -20 -77 -1346 152 -301 34 -93 73 22 -21 -93 99 -89 11 -1346 188 -301 -62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCYCYCYCYCYCYCTCYBYC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 113 E= 8.5e-080 0.000000 0.619469 0.292035 0.088496 0.017699 0.575221 0.088496 0.318584 0.097345 0.690265 0.017699 0.194690 0.000000 0.380531 0.097345 0.522124 0.017699 0.752212 0.079646 0.150442 0.079646 0.486726 0.044248 0.389381 0.123894 0.522124 0.106195 0.247788 0.035398 0.398230 0.150442 0.415929 0.000000 0.681416 0.115044 0.203540 0.159292 0.460177 0.026549 0.353982 0.000000 0.690265 0.212389 0.097345 0.000000 0.407080 0.097345 0.495575 0.000000 0.663717 0.292035 0.044248 0.026549 0.584071 0.000000 0.389381 0.000000 0.743363 0.141593 0.115044 0.115044 0.230088 0.176991 0.477876 0.000000 0.646018 0.185841 0.168142 0.000000 0.610619 0.026549 0.362832 0.150442 0.353982 0.247788 0.247788 0.150442 0.424779 0.115044 0.309735 0.000000 0.787611 0.026549 0.185841 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCYCYCYCYCYCYCTCYBYC MEME-2 regular expression -------------------------------------------------------------------------------- [CG][CT]C[TC]C[CT][CT][TC][CT][CT][CG][TC][CG][CT]C[TC]C[CT][CGT][CT]C -------------------------------------------------------------------------------- Time 623.66 secs. ******************************************************************************** ******************************************************************************** MOTIF WMATTWRCATAABAAWRV MEME-3 width = 18 sites = 82 llr = 923 E-value = 2.7e-067 ******************************************************************************** -------------------------------------------------------------------------------- Motif WMATTWRCATAABAAWRV MEME-3 Description -------------------------------------------------------------------------------- Simplified A 349::53:a:66:9a542 pos.-specific C 15::3:1a:::13::::3 probability G 1:::::6:::2:3::144 matrix T 511a75:::a2231:411 bits 2.2 2.0 * 1.8 * * * 1.6 * *** * Relative 1.3 * *** ** Entropy 1.1 ** *** ** (16.2 bits) 0.9 *** *** ** 0.7 ********* ** 0.4 *********** **** 0.2 ****************** 0.0 ------------------ Multilevel TCATTTGCATAACAAAAG consensus AA CAA GTT TGC sequence G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATAABAAWRV MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------ chr3:37343384-37343484 - 24 7.16e-09 AGACTCTAAA ACATTTGCATAACAAAAC TGCATCATCA chr19:21881889-21881989 + 18 7.16e-09 ggtagaagct acatttgcataataaaag actagggtgg chr3:21683227-21683327 + 24 7.16e-09 ggcagaaaac tcatctgcataataaaag attaggttgt chr20:50825505-50825605 - 34 2.20e-08 ATGACGACCT TCATTTGCATATTAAAAG ACTAGGGTGG chr7:23028498-23028598 + 26 2.76e-08 TTTTACTTCA TCATTAACATAAGAATGC CCTAGAAGAA chr12:119418210-11941831 - 19 2.76e-08 CCTCCTGCCG CCATCTGCATAACAAAAG CCCGCAGGTC chr12:119055466-11905556 + 4 4.32e-08 taa taattagcataccaaagg ttctgaaaag chr11:43975732-43975832 - 74 5.30e-08 GTAGAGAAC CCATCTGCATAATAAAAG ATTAGGGTAA chr3:87776795-87776895 + 68 6.48e-08 cctggcggct tcatctgcatgataaaac cttggtttcc chr2:189320669-189320769 + 11 7.84e-08 tttgcataag taatttgcataagaatgt taatcaccaa chr19:13763452-13763552 + 24 9.44e-08 ggtagagaac ccatctgcataataaaac attagggtgg chr9:74581340-74581440 - 10 1.34e-07 CTGTGAGGTT TCATCTGCATAACAAGAC TGCCTTTGC chr7:128898322-128898422 - 38 1.34e-07 CCAAGAAGGC TCATTTACATTATAATGG TTGCCACGGT chr8:70986814-70986914 + 72 1.34e-07 TGCCTTTTAG tcatttacataacaaagt ttcttttgaa chr11:9540300-9540400 + 28 1.57e-07 aattgaggta aaatttacataacaatga aatgcacaga chr11:41136442-41136542 - 53 1.57e-07 AAGAATTTGT TAATTAACATATCAAAAG AAGGTCCTGC chr1:171400960-171401060 + 21 2.15e-07 ctgaggggct tcatctacataataataa aaaacctttg chr20:36444202-36444302 + 70 2.15e-07 TGATGAGCTG TAATTAGCATAAGAAGGA GGTTGAAAAG chr13:28380684-28380784 - 75 2.49e-07 TGACACGC TCATTTGCATGCTAATAC CCAGAATGCC chr10:72385667-72385767 + 42 2.49e-07 cctggaggct tcatctgcataacaagaa ccttggcttc chr2:44365027-44365127 - 24 2.89e-07 TAGAGATACT AAATCAGCATGAGAATAC AGTTTCTTCA chr3:146222162-146222262 - 36 3.33e-07 TAATTATAAT GCATTAGCATACTAAAAG ACCCCACCAG chr18:58160271-58160371 + 23 4.36e-07 ccgaggaatc gaatcagcatgagaatgc agctttttca chr21:27030508-27030608 + 31 4.96e-07 AGAAAAAACA AAATTAGcatttgaatgg aactttacaa chr4:160304179-160304279 - 45 4.96e-07 TAAAAATAAA AAATTACCATAACAAAAC ATGGATGCCA chr8:32314721-32314821 + 52 5.62e-07 TTCCTCTATG TCATTTACATGACAATTG GCCCAAATCT chr1:196419128-196419228 - 60 5.62e-07 AATTTGGTAA TCATCAACATATGAATGA TCACTAAAAT chr7:26775495-26775595 + 57 7.19e-07 taattataac gcattagcatgctaaaag acactcctac chr6:82417837-82417937 - 19 7.19e-07 CAATTATAAT GCATTAGCATGCTAAAAG ACATTCCTGC chr18:56307030-56307130 + 15 7.19e-07 ACATTGGAGA ACATTTGCATTTTAAAGA GAATGCCCAA chr6:85620478-85620578 + 28 8.10e-07 AGGCAGTGCT GAATCTACATATGAAAGG GAATTGTAAA chr4:39890759-39890859 + 2 8.10e-07 a taATCAGCATTTCAATAC AGCCACATCA chr12:53610661-53610761 + 17 1.02e-06 CACATACAAT CAATTAGCATAAGAATCC TGCCAGAGTG chr3:143190435-143190535 - 21 1.02e-06 AACATCAACA TAATTAACATAAGAATCC CTTAGAGGGC chr16:19893337-19893437 - 18 1.14e-06 GCCAAGGATG CAATTTGCATTTCAATGA TTGCTTTTAT chr22:17715737-17715837 - 24 1.14e-06 TCCATTATTT TCATTTGCATGTAAAAGG TCATCCTTTT chr3:65932538-65932638 - 32 1.14e-06 GCTCGGGAGT TATTTTACATAACAATGA GGATGAGATG chr7:32720072-32720172 + 9 1.27e-06 attataat atattagcatactaaagg aaactcccac chr12:33740964-33741064 + 43 1.42e-06 tgacagttga taatcaccatgacaatga ccagaagaaa chrX:144884959-144885059 + 38 1.42e-06 TACTTAACAT TCTTCTGCATGACAATAA GGCTCACAAG chr8:5023370-5023470 + 25 1.58e-06 tacataagat caattaacatgcgaaaag agggagtaga chr6:118180575-118180675 - 35 1.58e-06 AAAAGGGGCT TTATTTACATAACAAGGC CACCTTTTTG chr4:140162540-140162640 + 36 1.94e-06 gtaagggaag aacttagcataagaaaag aaagtttaag chr2:85685862-85685962 + 22 2.88e-06 CTCTACGTAA AAATTAACATAACAACAA CAAAAAGGTG chr7:82071297-82071397 - 39 2.88e-06 CACTTTAATG CATTTTACATAACAAAAA CAAAGCCCAA chr3:142581491-142581591 + 36 2.88e-06 TTCACAGCAG GCATTTGCATGGGAAAGC TTGGTTCACT chr10:86327157-86327257 + 55 3.18e-06 cagtgttagc taattaacatttgaagag atgcttaatc chrX:45314807-45314907 + 55 3.49e-06 cttactgcgg aaatttgcataagtaatg aggagccaaa chr10:12222608-12222708 - 28 5.04e-06 AGGCCAACAG GCTTTTCCATAACAAAGA AGACTAGGAA chr13:100847586-10084768 + 45 5.04e-06 ACAAAATACT TCATTTGCATTCTTAAAC ATTAGGAACT chr6:158129259-158129359 + 61 5.04e-06 tggtggtctc tcattagctttacaaagg aggttcaatt chr7:93022128-93022228 + 72 5.51e-06 CAAACTAAAT CTATTTACATAACAAATC CCTACAAATT chr2:158616162-158616262 + 22 6.02e-06 gaatatacat acttcaacataataaggg ccatatgcaa chr2:200733237-200733337 + 6 6.02e-06 GGGAA TAATTAACATTTGAATTC AAGGAATGTG chr2:201182404-201182504 - 78 6.02e-06 TTCTT ACCTTAGCATACTAAAGC TTTTTCCCTC chr17:65748239-65748339 - 83 6.57e-06 . TATTCTGCATTTGAATGA GTAATCAGCA chr1:185668963-185669063 - 58 6.57e-06 AGTAGGGGTT TCATATGCATATGAAAGT CTGAGAAACA chr21:20492736-20492836 - 5 6.57e-06 CAGGGTGGAG ATTTTAGCATGATAATAG GAAA chr8:120437992-120438092 + 58 7.16e-06 aggtgacatt tcatcagaATGACAAAGA GAAAGAATCT chr10:110357772-11035787 + 2 7.16e-06 g taattaacataggaatgt agaggagtct chr2:154669036-154669136 - 69 9.22e-06 TGAGATATCA CCATTTACATAAGATTAG AAAGAAAACA chr3:162186486-162186586 + 64 9.22e-06 AAGGACTAAG GTATTTGCATGTGAAAAT GTTCCAGCCT chrX:22061207-22061307 - 69 9.22e-06 AGTGTTGGGC ACATTACCATATAAATGC ATGATGCCCA chr2:186989855-186989955 + 11 9.22e-06 CAGTGAAACA GAATCTCCATCACAATAG CACTCAGGGA chr6:21691973-21692073 + 59 1.09e-05 CTAAGTAAGA TAATCTTCATGATAAAGA GTGGTGAGCA chr7:150351751-150351851 - 39 1.09e-05 AGAGATGCAG AAATCAACATAAGTATGT GGATTTGCAT chr13:68310669-68310769 - 76 1.28e-05 AAGAAAA ACATTTGCATTTCCAAAG AAATGTTCTG chr3:186682688-186682788 + 6 1.38e-05 CTAAT AAATTAGCATAATGAAGT CCCAGCCTCT chr18:46485981-46486081 - 4 1.49e-05 GATAATATGA TAATTAGCATCTGTATAC CAC chr3:189731769-189731869 - 37 1.61e-05 AGGGGTGAAA TTATTTGCATCAAAATAG GAGAAAGAAA chr12:48536616-48536716 - 75 1.61e-05 CTGACTCA AAATCAGCATTCCAACAA CAGTAGCTGC chr9:37226172-37226272 - 34 1.74e-05 TCTGTCCCAT ACATCTACATACTAATCT TCACAATACT chr17:68535176-68535276 + 35 1.88e-05 GTACATAAAG TTATTCACATGATAATGG ATACAGAACT chr2:213951103-213951203 - 61 2.18e-05 AGATTCCATT CCATCAGCATAATAGTTA ATAATAGTTG chr7:121788800-121788900 - 46 2.34e-05 AATGTGTGTG TCATTTACAAGACAATAT GAGAGTTAGG chr4:163084841-163084941 + 20 2.52e-05 CTGACGTAAC TATTTTGCATATCAACTC GCCGAGAGGT chr6:157112364-157112464 - 37 3.58e-05 AGCACATGGC TAATCTACATATGTGAAG GTCACGGCAC chr2:194713928-194714028 + 77 3.83e-05 CTAAAAATCA CATTTACCATTATAAGGC AACAGG chr12:13408694-13408794 - 29 3.83e-05 CCTCCCACCT TAATTACAATTAGAATGA AATTATGTTC chr10:44793096-44793196 - 27 4.10e-05 TTCCTTTCCA GTATTTGCATAATTAACA TATCTCTCTT chr6:25899185-25899285 + 25 4.68e-05 acacacacat acaTTTACGTAACAGAGC AAGTGTGAAA chr5:140381635-140381735 + 2 5.00e-05 G CAATAACCATAATAATTG GCACATTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATAABAAWRV MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:37343384-37343484 7.2e-09 23_[-3]_59 chr19:21881889-21881989 7.2e-09 17_[+3]_65 chr3:21683227-21683327 7.2e-09 23_[+3]_59 chr20:50825505-50825605 2.2e-08 33_[-3]_49 chr7:23028498-23028598 2.8e-08 25_[+3]_57 chr12:119418210-11941831 2.8e-08 18_[-3]_64 chr12:119055466-11905556 4.3e-08 3_[+3]_79 chr11:43975732-43975832 5.3e-08 73_[-3]_9 chr3:87776795-87776895 6.5e-08 67_[+3]_15 chr2:189320669-189320769 7.8e-08 10_[+3]_72 chr19:13763452-13763552 9.4e-08 23_[+3]_59 chr9:74581340-74581440 1.3e-07 9_[-3]_73 chr7:128898322-128898422 1.3e-07 37_[-3]_45 chr8:70986814-70986914 1.3e-07 71_[+3]_11 chr11:9540300-9540400 1.6e-07 27_[+3]_55 chr11:41136442-41136542 1.6e-07 52_[-3]_30 chr1:171400960-171401060 2.2e-07 20_[+3]_62 chr20:36444202-36444302 2.2e-07 69_[+3]_13 chr13:28380684-28380784 2.5e-07 74_[-3]_8 chr10:72385667-72385767 2.5e-07 41_[+3]_41 chr2:44365027-44365127 2.9e-07 23_[-3]_59 chr3:146222162-146222262 3.3e-07 35_[-3]_47 chr18:58160271-58160371 4.4e-07 22_[+3]_60 chr21:27030508-27030608 5e-07 30_[+3]_52 chr4:160304179-160304279 5e-07 44_[-3]_38 chr8:32314721-32314821 5.6e-07 51_[+3]_31 chr1:196419128-196419228 5.6e-07 59_[-3]_23 chr7:26775495-26775595 7.2e-07 56_[+3]_26 chr6:82417837-82417937 7.2e-07 18_[-3]_64 chr18:56307030-56307130 7.2e-07 14_[+3]_68 chr6:85620478-85620578 8.1e-07 27_[+3]_55 chr4:39890759-39890859 8.1e-07 1_[+3]_81 chr12:53610661-53610761 1e-06 16_[+3]_66 chr3:143190435-143190535 1e-06 20_[-3]_62 chr16:19893337-19893437 1.1e-06 17_[-3]_65 chr22:17715737-17715837 1.1e-06 23_[-3]_59 chr3:65932538-65932638 1.1e-06 31_[-3]_51 chr7:32720072-32720172 1.3e-06 8_[+3]_74 chr12:33740964-33741064 1.4e-06 42_[+3]_40 chrX:144884959-144885059 1.4e-06 37_[+3]_45 chr8:5023370-5023470 1.6e-06 24_[+3]_58 chr6:118180575-118180675 1.6e-06 34_[-3]_48 chr4:140162540-140162640 1.9e-06 35_[+3]_47 chr2:85685862-85685962 2.9e-06 21_[+3]_61 chr7:82071297-82071397 2.9e-06 38_[-3]_44 chr3:142581491-142581591 2.9e-06 35_[+3]_47 chr10:86327157-86327257 3.2e-06 54_[+3]_28 chrX:45314807-45314907 3.5e-06 54_[+3]_28 chr10:12222608-12222708 5e-06 27_[-3]_55 chr13:100847586-10084768 5e-06 44_[+3]_38 chr6:158129259-158129359 5e-06 60_[+3]_22 chr7:93022128-93022228 5.5e-06 71_[+3]_11 chr2:158616162-158616262 6e-06 21_[+3]_61 chr2:200733237-200733337 6e-06 5_[+3]_77 chr2:201182404-201182504 6e-06 77_[-3]_5 chr17:65748239-65748339 6.6e-06 82_[-3] chr1:185668963-185669063 6.6e-06 57_[-3]_25 chr21:20492736-20492836 6.6e-06 4_[-3]_78 chr8:120437992-120438092 7.2e-06 57_[+3]_25 chr10:110357772-11035787 7.2e-06 1_[+3]_81 chr2:154669036-154669136 9.2e-06 68_[-3]_14 chr3:162186486-162186586 9.2e-06 63_[+3]_19 chrX:22061207-22061307 9.2e-06 68_[-3]_14 chr2:186989855-186989955 9.2e-06 10_[+3]_72 chr6:21691973-21692073 1.1e-05 58_[+3]_24 chr7:150351751-150351851 1.1e-05 38_[-3]_44 chr13:68310669-68310769 1.3e-05 75_[-3]_7 chr3:186682688-186682788 1.4e-05 5_[+3]_77 chr18:46485981-46486081 1.5e-05 3_[-3]_79 chr3:189731769-189731869 1.6e-05 36_[-3]_46 chr12:48536616-48536716 1.6e-05 74_[-3]_8 chr9:37226172-37226272 1.7e-05 33_[-3]_49 chr17:68535176-68535276 1.9e-05 34_[+3]_48 chr2:213951103-213951203 2.2e-05 60_[-3]_22 chr7:121788800-121788900 2.3e-05 45_[-3]_37 chr4:163084841-163084941 2.5e-05 19_[+3]_63 chr6:157112364-157112464 3.6e-05 36_[-3]_46 chr2:194713928-194714028 3.8e-05 76_[+3]_6 chr12:13408694-13408794 3.8e-05 28_[-3]_54 chr10:44793096-44793196 4.1e-05 26_[-3]_56 chr6:25899185-25899285 4.7e-05 24_[+3]_58 chr5:140381635-140381735 5e-05 1_[+3]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATAABAAWRV MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WMATTWRCATAABAAWRV width=18 seqs=82 chr3:37343384-37343484 ( 24) ACATTTGCATAACAAAAC 1 chr19:21881889-21881989 ( 18) ACATTTGCATAATAAAAG 1 chr3:21683227-21683327 ( 24) TCATCTGCATAATAAAAG 1 chr20:50825505-50825605 ( 34) TCATTTGCATATTAAAAG 1 chr7:23028498-23028598 ( 26) TCATTAACATAAGAATGC 1 chr12:119418210-11941831 ( 19) CCATCTGCATAACAAAAG 1 chr12:119055466-11905556 ( 4) TAATTAGCATACCAAAGG 1 chr11:43975732-43975832 ( 74) CCATCTGCATAATAAAAG 1 chr3:87776795-87776895 ( 68) TCATCTGCATGATAAAAC 1 chr2:189320669-189320769 ( 11) TAATTTGCATAAGAATGT 1 chr19:13763452-13763552 ( 24) CCATCTGCATAATAAAAC 1 chr9:74581340-74581440 ( 10) TCATCTGCATAACAAGAC 1 chr7:128898322-128898422 ( 38) TCATTTACATTATAATGG 1 chr8:70986814-70986914 ( 72) TCATTTACATAACAAAGT 1 chr11:9540300-9540400 ( 28) AAATTTACATAACAATGA 1 chr11:41136442-41136542 ( 53) TAATTAACATATCAAAAG 1 chr1:171400960-171401060 ( 21) TCATCTACATAATAATAA 1 chr20:36444202-36444302 ( 70) TAATTAGCATAAGAAGGA 1 chr13:28380684-28380784 ( 75) TCATTTGCATGCTAATAC 1 chr10:72385667-72385767 ( 42) TCATCTGCATAACAAGAA 1 chr2:44365027-44365127 ( 24) AAATCAGCATGAGAATAC 1 chr3:146222162-146222262 ( 36) GCATTAGCATACTAAAAG 1 chr18:58160271-58160371 ( 23) GAATCAGCATGAGAATGC 1 chr21:27030508-27030608 ( 31) AAATTAGCATTTGAATGG 1 chr4:160304179-160304279 ( 45) AAATTACCATAACAAAAC 1 chr8:32314721-32314821 ( 52) TCATTTACATGACAATTG 1 chr1:196419128-196419228 ( 60) TCATCAACATATGAATGA 1 chr7:26775495-26775595 ( 57) GCATTAGCATGCTAAAAG 1 chr6:82417837-82417937 ( 19) GCATTAGCATGCTAAAAG 1 chr18:56307030-56307130 ( 15) ACATTTGCATTTTAAAGA 1 chr6:85620478-85620578 ( 28) GAATCTACATATGAAAGG 1 chr4:39890759-39890859 ( 2) TAATCAGCATTTCAATAC 1 chr12:53610661-53610761 ( 17) CAATTAGCATAAGAATCC 1 chr3:143190435-143190535 ( 21) TAATTAACATAAGAATCC 1 chr16:19893337-19893437 ( 18) CAATTTGCATTTCAATGA 1 chr22:17715737-17715837 ( 24) TCATTTGCATGTAAAAGG 1 chr3:65932538-65932638 ( 32) TATTTTACATAACAATGA 1 chr7:32720072-32720172 ( 9) ATATTAGCATACTAAAGG 1 chr12:33740964-33741064 ( 43) TAATCACCATGACAATGA 1 chrX:144884959-144885059 ( 38) TCTTCTGCATGACAATAA 1 chr8:5023370-5023470 ( 25) CAATTAACATGCGAAAAG 1 chr6:118180575-118180675 ( 35) TTATTTACATAACAAGGC 1 chr4:140162540-140162640 ( 36) AACTTAGCATAAGAAAAG 1 chr2:85685862-85685962 ( 22) AAATTAACATAACAACAA 1 chr7:82071297-82071397 ( 39) CATTTTACATAACAAAAA 1 chr3:142581491-142581591 ( 36) GCATTTGCATGGGAAAGC 1 chr10:86327157-86327257 ( 55) TAATTAACATTTGAAGAG 1 chrX:45314807-45314907 ( 55) AAATTTGCATAAGTAATG 1 chr10:12222608-12222708 ( 28) GCTTTTCCATAACAAAGA 1 chr13:100847586-10084768 ( 45) TCATTTGCATTCTTAAAC 1 chr6:158129259-158129359 ( 61) TCATTAGCTTTACAAAGG 1 chr7:93022128-93022228 ( 72) CTATTTACATAACAAATC 1 chr2:158616162-158616262 ( 22) ACTTCAACATAATAAGGG 1 chr2:200733237-200733337 ( 6) TAATTAACATTTGAATTC 1 chr2:201182404-201182504 ( 78) ACCTTAGCATACTAAAGC 1 chr17:65748239-65748339 ( 83) TATTCTGCATTTGAATGA 1 chr1:185668963-185669063 ( 58) TCATATGCATATGAAAGT 1 chr21:20492736-20492836 ( 5) ATTTTAGCATGATAATAG 1 chr8:120437992-120438092 ( 58) TCATCAGAATGACAAAGA 1 chr10:110357772-11035787 ( 2) TAATTAACATAGGAATGT 1 chr2:154669036-154669136 ( 69) CCATTTACATAAGATTAG 1 chr3:162186486-162186586 ( 64) GTATTTGCATGTGAAAAT 1 chrX:22061207-22061307 ( 69) ACATTACCATATAAATGC 1 chr2:186989855-186989955 ( 11) GAATCTCCATCACAATAG 1 chr6:21691973-21692073 ( 59) TAATCTTCATGATAAAGA 1 chr7:150351751-150351851 ( 39) AAATCAACATAAGTATGT 1 chr13:68310669-68310769 ( 76) ACATTTGCATTTCCAAAG 1 chr3:186682688-186682788 ( 6) AAATTAGCATAATGAAGT 1 chr18:46485981-46486081 ( 4) TAATTAGCATCTGTATAC 1 chr3:189731769-189731869 ( 37) TTATTTGCATCAAAATAG 1 chr12:48536616-48536716 ( 75) AAATCAGCATTCCAACAA 1 chr9:37226172-37226272 ( 34) ACATCTACATACTAATCT 1 chr17:68535176-68535276 ( 35) TTATTCACATGATAATGG 1 chr2:213951103-213951203 ( 61) CCATCAGCATAATAGTTA 1 chr7:121788800-121788900 ( 46) TCATTTACAAGACAATAT 1 chr4:163084841-163084941 ( 20) TATTTTGCATATCAACTC 1 chr6:157112364-157112464 ( 37) TAATCTACATATGTGAAG 1 chr2:194713928-194714028 ( 77) CATTTACCATTATAAGGC 1 chr12:13408694-13408794 ( 29) TAATTACAATTAGAATGA 1 chr10:44793096-44793196 ( 27) GTATTTGCATAATTAACA 1 chr6:25899185-25899285 ( 25) ACATTTACGTAACAGAGC 1 chr5:140381635-140381735 ( 2) CAATAACCATAATAATTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATAABAAWRV MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 18 n= 49468 bayes= 11.0826 E= 2.7e-067 -16 -54 -81 73 62 112 -1300 -155 159 -313 -1300 -138 -1300 -1300 -1300 180 -355 51 -1300 123 65 -413 -1300 90 20 -113 139 -455 -355 219 -1300 -1300 177 -1300 -413 -455 -455 -1300 -1300 179 100 -254 4 -75 109 -67 -313 -31 -297 68 51 15 165 -413 -413 -197 173 -1300 -254 -455 69 -254 -132 53 62 -213 100 -175 -23 39 78 -138 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATAABAAWRV MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 18 nsites= 82 E= 2.7e-067 0.256098 0.146341 0.121951 0.475610 0.439024 0.463415 0.000000 0.097561 0.865854 0.024390 0.000000 0.109756 0.000000 0.000000 0.000000 1.000000 0.024390 0.304878 0.000000 0.670732 0.451220 0.012195 0.000000 0.536585 0.329268 0.097561 0.560976 0.012195 0.024390 0.975610 0.000000 0.000000 0.975610 0.000000 0.012195 0.012195 0.012195 0.000000 0.000000 0.987805 0.573171 0.036585 0.219512 0.170732 0.609756 0.134146 0.024390 0.231707 0.036585 0.341463 0.304878 0.317073 0.902439 0.012195 0.012195 0.073171 0.951220 0.000000 0.036585 0.012195 0.463415 0.036585 0.085366 0.414634 0.439024 0.048780 0.426829 0.085366 0.243902 0.280488 0.365854 0.109756 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATAABAAWRV MEME-3 regular expression -------------------------------------------------------------------------------- [TA][CA]AT[TC][TA][GA]CAT[AG][AT][CTG]AA[AT][AG][GCA] -------------------------------------------------------------------------------- Time 881.39 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:94755202-94755302 8.36e-01 100 chr2:14817079-14817179 3.51e-06 32_[-1(1.53e-09)]_47 chr7:127808548-127808648 5.95e-03 11_[+2(1.14e-05)]_47_[+2(2.64e-05)] chr17:49123298-49123398 5.95e-01 100 chr3:183958040-183958140 2.53e-06 75_[+1(1.08e-08)]_4 chr10:110357772-11035787 2.95e-02 1_[+3(7.16e-06)]_81 chr13:104904567-10490466 1.14e-01 100 chrX:45314807-45314907 1.06e-02 54_[+3(3.49e-06)]_28 chr6:108879100-108879200 2.74e-03 32_[+2(2.94e-06)]_47 chr1:8520642-8520742 6.49e-01 100 chr1:82012983-82013083 6.93e-02 100 chr3:21683227-21683327 1.13e-05 23_[+3(7.16e-09)]_59 chr12:130255499-13025559 8.72e-01 100 chr11:20692998-20693098 2.71e-04 24_[-2(9.26e-08)]_55 chr9:28895288-28895388 6.12e-03 100 chr12:41969572-41969672 9.69e-01 100 chr3:57741348-57741448 5.66e-01 100 chr13:82232991-82233091 8.03e-03 3_[-2(5.69e-05)]_76 chr6:70631524-70631624 4.46e-01 100 chr12:24368597-24368697 2.28e-01 100 chr4:140162540-140162640 7.83e-04 35_[+3(1.94e-06)]_47 chr1:37389531-37389631 9.07e-03 72_[+1(6.81e-05)]_7 chr10:132722324-13272242 8.85e-09 22_[-1(6.75e-11)]_11_[-2(3.74e-05)]_\ 25 chr3:2344959-2345059 3.17e-01 100 chr9:10921319-10921419 1.77e-01 100 chr17:67444537-67444637 2.44e-02 100 chr8:132985880-132985980 6.20e-02 100 chr3:77074527-77074627 9.15e-01 100 chr19:47947269-47947369 2.20e-02 37_[-2(9.15e-05)]_42 chr8:24770140-24770240 2.85e-01 100 chr5:141217932-141218032 8.50e-03 100 chr14:33579672-33579772 8.34e-02 41_[-3(9.87e-05)]_41 chr9:76700098-76700198 1.77e-01 100 chr10:30811417-30811517 8.56e-01 100 chr1:202661586-202661686 2.14e-03 41_[-2(6.30e-07)]_38 chr8:11662670-11662770 3.75e-01 100 chr12:108775356-10877545 9.25e-01 100 chr6:111575434-111575534 8.06e-01 100 chr16:49160863-49160963 8.06e-08 11_[-1(1.61e-11)]_68 chr4:34187659-34187759 3.59e-01 100 chr2:112463120-112463220 1.10e-01 100 chr2:44365027-44365127 5.28e-04 23_[-3(2.89e-07)]_59 chr17:14429118-14429218 1.03e-02 23_[-2(3.67e-06)]_56 chr2:129396012-129396112 1.48e-01 100 chr4:74317046-74317146 7.65e-01 100 chr5:161494968-161495068 1.10e-05 7_[-2(4.71e-09)]_72 chr6:158129259-158129359 1.24e-03 60_[+3(5.04e-06)]_22 chr6:92008155-92008255 7.16e-01 100 chr17:32934877-32934977 9.16e-03 14_[-1(7.25e-05)]_65 chrX:153140422-153140522 5.21e-04 32_[-2(5.69e-05)]_9_[-2(3.67e-06)]_\ 17 chr5:118218342-118218442 2.23e-01 100 chr12:48536616-48536716 6.12e-03 74_[-3(1.61e-05)]_8 chr7:99173669-99173769 5.95e-01 100 chr5:151625750-151625850 1.70e-07 11_[+1(2.85e-11)]_68 chr19:18632758-18632858 4.81e-02 30_[+2(2.20e-05)]_49 chr3:19033517-19033617 2.64e-01 100 chr2:208249350-208249450 5.58e-01 100 chr15:86779950-86780050 3.37e-01 100 chr9:129438835-129438935 3.37e-01 100 chr15:53364277-53364377 9.63e-03 100 chr3:143190435-143190535 1.17e-03 20_[-3(1.02e-06)]_62 chr4:41923369-41923469 1.64e-01 100 chr3:25789597-25789697 9.86e-01 100 chr2:60962835-60962935 1.07e-01 100 chr1:37485989-37486089 2.62e-09 16_[+1(9.18e-12)]_17_[+2(3.15e-05)]_\ 25 chr11:80274085-80274185 2.12e-01 100 chr16:17232621-17232721 5.51e-01 100 chr5:167288041-167288141 1.66e-01 69_[+1(9.27e-05)]_10 chr6:128006676-128006776 2.43e-01 100 chr5:101022105-101022205 8.38e-01 100 chr4:119590246-119590346 7.58e-07 31_[-1(1.93e-10)]_48 chr19:21881889-21881989 1.03e-05 17_[+3(7.16e-09)]_65 chr2:6780211-6780311 1.08e-02 67_[+2(2.20e-05)]_12 chr3:174255894-174255994 2.23e-02 52_[-2(4.82e-05)]_27 chr4:75411772-75411872 2.32e-01 100 chr9:128462984-128463084 3.11e-01 100 chr13:68310669-68310769 9.13e-04 75_[-3(1.28e-05)]_7 chr3:87776795-87776895 1.59e-04 67_[+3(6.48e-08)]_15 chr1:175099106-175099206 2.62e-01 100 chr3:29735226-29735326 5.24e-01 100 chr1:58406245-58406345 5.40e-01 100 chr9:34458349-34458449 4.09e-02 60_[+2(9.35e-06)]_19 chr1:45917753-45917853 1.01e-01 100 chr6:68788643-68788743 3.47e-01 100 chr1:81777979-81778079 2.66e-01 100 chr3:71354403-71354503 4.87e-01 100 chr9:17082279-17082379 9.36e-02 100 chr4:39890759-39890859 3.55e-03 1_[+3(8.10e-07)]_81 chr8:40935062-40935162 5.78e-02 24_[-3(5.33e-05)]_58 chr1:91392450-91392550 3.64e-01 100 chr1:50774228-50774328 5.47e-06 16_[-1(1.40e-09)]_63 chr22:45371346-45371446 2.93e-08 41_[+1(5.05e-12)]_38 chr8:73913565-73913665 3.88e-01 100 chr17:68535176-68535276 5.97e-02 34_[+3(1.88e-05)]_48 chr7:121788800-121788900 6.63e-02 45_[-3(2.34e-05)]_37 chr17:34959121-34959221 1.20e-01 100 chr9:11915210-11915310 3.92e-01 100 chr3:95645651-95645751 3.52e-01 100 chrX:34575841-34575941 2.40e-01 100 chr19:6767444-6767544 4.00e-02 42_[+2(4.08e-05)]_37 chr10:21571970-21572070 4.51e-01 100 chr3:165702416-165702516 4.20e-01 100 chr9:76272431-76272531 7.00e-01 100 chr4:62635650-62635750 3.45e-01 100 chr3:30323806-30323906 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1.43e-02 54_[+1(6.20e-05)]_25 chr8:60029152-60029252 3.09e-01 100 chr5:52230136-52230236 6.40e-01 100 chr8:129780569-129780669 5.71e-01 100 chr21:39286216-39286316 4.05e-02 71_[+2(2.20e-05)]_8 chr16:10989102-10989202 2.05e-10 71_[-1(1.03e-11)]_8 chr21:18201788-18201888 1.74e-01 12_[-3(8.25e-05)]_70 chr3:65932538-65932638 1.27e-03 31_[-3(1.14e-06)]_51 chr3:162439304-162439404 6.33e-01 100 chrX:144884959-144885059 2.10e-04 37_[+3(1.42e-06)]_45 chr5:17223632-17223732 3.93e-01 100 chr6:139716960-139717060 7.90e-02 22_[-2(9.88e-05)]_57 chr10:86327157-86327257 8.81e-03 54_[+3(3.18e-06)]_28 chr15:44579743-44579843 5.23e-05 74_[-2(1.37e-08)]_5 chr2:52697219-52697319 1.79e-01 100 chr22:40572580-40572680 8.27e-03 64_[-2(1.32e-06)]_15 chr12:119423466-11942356 3.66e-01 100 chr2:62581823-62581923 4.28e-01 100 chr7:80353144-80353244 1.03e-01 100 chr20:50575432-50575532 6.28e-01 100 chr5:161316866-161316966 1.80e-05 35_[-1(1.17e-09)]_44 chr14:79315968-79316068 6.17e-01 100 chr21:22161999-22162099 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chrX:70474348-70474448 2.03e-02 78_[+2(2.41e-05)]_1 chr16:27807233-27807333 1.55e-07 71_[+1(5.62e-12)]_8 chr1:155246795-155246895 9.15e-03 57_[+2(3.74e-05)]_22 chr8:93143829-93143929 1.55e-02 100 chr6:126066767-126066867 3.59e-01 100 chr12:19156799-19156899 9.27e-01 100 chr2:5837913-5838013 3.14e-01 100 chr9:92219104-92219204 6.40e-01 100 chr11:43975732-43975832 2.69e-04 73_[-3(5.30e-08)]_9 chr1:82266223-82266323 1.08e-03 24_[+2(1.67e-06)]_55 chr3:186716299-186716399 4.66e-03 29_[+2(1.03e-06)]_28_[-2(3.74e-05)]_\ 1 chr1:109772215-109772315 4.56e-01 100 chr5:92936918-92937018 1.12e-05 39_[-2(2.27e-08)]_11_[-2(9.35e-06)]_\ 8 chr2:145236558-145236658 5.23e-01 100 chr12:121124075-12112417 3.63e-03 6_[-2(1.87e-06)]_73 chr3:65386669-65386769 3.27e-03 7_[+2(6.30e-07)]_44_[+2(1.14e-05)]_\ 7 chr21:27030508-27030608 3.14e-03 30_[+3(4.96e-07)]_52 chr17:65748239-65748339 2.22e-02 82_[-3(6.57e-06)] chr11:6344281-6344381 9.84e-01 100 chr14:67735064-67735164 1.61e-01 100 chr2:133897273-133897373 1.89e-01 100 chr12:89257311-89257411 1.14e-01 9_[-3(6.45e-05)]_73 chr18:33430686-33430786 2.61e-01 100 chr6:84568624-84568724 9.87e-01 100 chr4:16901237-16901337 8.82e-02 100 chr16:7296456-7296556 4.48e-06 50_[-1(4.50e-10)]_29 chr6:92050689-92050789 2.96e-01 100 chr15:88406338-88406438 1.86e-06 27_[+1(3.64e-10)]_52 chr6:26199271-26199371 9.10e-01 100 chr6:18752236-18752336 4.50e-01 100 chr2:68546783-68546883 9.29e-01 100 chr7:23028498-23028598 3.76e-04 25_[+3(2.76e-08)]_57 chr21:43014290-43014390 1.72e-02 24_[-2(5.24e-05)]_55 chr7:26775495-26775595 1.24e-03 34_[-3(9.30e-05)]_4_[+3(7.19e-07)]_\ 26 chr22:26759910-26760010 4.66e-01 100 chr10:21817827-21817927 7.30e-01 100 chr15:49620951-49621051 3.61e-01 100 chr15:89950462-89950562 6.89e-02 100 chr5:12330778-12330878 5.56e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: surya.stanford.edu ********************************************************************************