******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= cutnotseq_memechip_out/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:92690804-92690904 1.0000 100 chr21:27683265-27683365 1.0000 100 chr7:100937414-100937514 1.0000 100 chr17:44297238-44297338 1.0000 100 chr3:143190435-143190535 1.0000 100 chr10:110729674-11072977 1.0000 100 chr13:20255564-20255664 1.0000 100 chrX:5160440-5160540 1.0000 100 chr5:72334634-72334734 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1.0000 100 chr6:42585645-42585745 1.0000 100 chr3:10795584-10795684 1.0000 100 chr15:89950462-89950562 1.0000 100 chr14:26913675-26913775 1.0000 100 chr19:10059269-10059369 1.0000 100 chr3:25789597-25789697 1.0000 100 chr8:103921263-103921363 1.0000 100 chr17:35462655-35462755 1.0000 100 chr11:41519046-41519146 1.0000 100 chr2:182531438-182531538 1.0000 100 chr6:5003707-5003807 1.0000 100 chr2:52667293-52667393 1.0000 100 chr2:215115699-215115799 1.0000 100 chr12:56415038-56415138 1.0000 100 chr12:50505431-50505531 1.0000 100 chr10:99751527-99751627 1.0000 100 chr10:20276619-20276719 1.0000 100 chr13:102498701-10249880 1.0000 100 chr2:171536667-171536767 1.0000 100 chr1:116106727-116106827 1.0000 100 chr11:100698805-10069890 1.0000 100 chr13:51878783-51878883 1.0000 100 chr3:152811324-152811424 1.0000 100 chr17:1953198-1953298 1.0000 100 chr4:109782421-109782521 1.0000 100 chr8:53164655-53164755 1.0000 100 chr5:155871212-155871312 1.0000 100 chr16:19872089-19872189 1.0000 100 chr20:859098-859198 1.0000 100 chr8:21053851-21053951 1.0000 100 chr7:107644173-107644273 1.0000 100 chr4:99255540-99255640 1.0000 100 chr17:14429118-14429218 1.0000 100 chr5:102982647-102982747 1.0000 100 chr7:83095578-83095678 1.0000 100 chr1:183385576-183385676 1.0000 100 chr9:109697120-109697220 1.0000 100 chr8:71291900-71292000 1.0000 100 chr2:116900221-116900321 1.0000 100 chr5:118218342-118218442 1.0000 100 chr20:10332770-10332870 1.0000 100 chr1:210899830-210899930 1.0000 100 chr15:42911831-42911931 1.0000 100 chr11:103834276-10383437 1.0000 100 chr7:108166301-108166401 1.0000 100 chr6:40965081-40965181 1.0000 100 chr10:74553534-74553634 1.0000 100 chr4:135994458-135994558 1.0000 100 chr22:39941768-39941868 1.0000 100 chr21:21388820-21388920 1.0000 100 chr7:13873253-13873353 1.0000 100 chr7:25901633-25901733 1.0000 100 chr12:76337797-76337897 1.0000 100 chr6:48534646-48534746 1.0000 100 chr6:4889785-4889885 1.0000 100 chr11:80695386-80695486 1.0000 100 chr16:7232194-7232294 1.0000 100 chr12:48536616-48536716 1.0000 100 chr3:192162455-192162555 1.0000 100 chr6:129659743-129659843 1.0000 100 chr3:189731769-189731869 1.0000 100 chr11:38347981-38348081 1.0000 100 chr6:134245097-134245197 1.0000 100 chr1:121298184-121298284 1.0000 100 chr3:20522229-20522329 1.0000 100 chr6:65900602-65900702 1.0000 100 chr15:89542021-89542121 1.0000 100 chr13:56226876-56226976 1.0000 100 chr20:61747475-61747575 1.0000 100 chr12:126718007-12671810 1.0000 100 chr2:63844682-63844782 1.0000 100 chr15:90942372-90942472 1.0000 100 chr11:87013148-87013248 1.0000 100 chr18:33068371-33068471 1.0000 100 chr1:120221888-120221988 1.0000 100 chr3:142443703-142443803 1.0000 100 chr12:77300715-77300815 1.0000 100 chr6:48732586-48732686 1.0000 100 chr3:70119996-70120096 1.0000 100 chr13:68597077-68597177 1.0000 100 chr13:84455767-84455867 1.0000 100 chr13:22177608-22177708 1.0000 100 chr13:47686182-47686282 1.0000 100 chr6:96463358-96463458 1.0000 100 chr6:139688820-139688920 1.0000 100 chr10:52839120-52839220 1.0000 100 chr12:2888513-2888613 1.0000 100 chr2:63973607-63973707 1.0000 100 chr6:116427735-116427835 1.0000 100 chr8:51364634-51364734 1.0000 100 chr6:26123916-26124016 1.0000 100 chr9:73854359-73854459 1.0000 100 chr12:113658757-11365885 1.0000 100 chrX:7492300-7492400 1.0000 100 chr19:42644174-42644274 1.0000 100 chr4:162851157-162851257 1.0000 100 chr9:132098319-132098419 1.0000 100 chr6:25652128-25652228 1.0000 100 chr15:53149905-53150005 1.0000 100 chr13:68315319-68315419 1.0000 100 chrX:127887542-127887642 1.0000 100 chr1:17193266-17193366 1.0000 100 chr2:120060581-120060681 1.0000 100 chr4:114900545-114900645 1.0000 100 chr10:32327377-32327477 1.0000 100 chr2:63270989-63271089 1.0000 100 chr16:17243654-17243754 1.0000 100 chr4:159195174-159195274 1.0000 100 chr2:50625268-50625368 1.0000 100 chr20:639344-639444 1.0000 100 chr2:129931471-129931571 1.0000 100 chr18:35104800-35104900 1.0000 100 chr11:22355066-22355166 1.0000 100 chr1:64708798-64708898 1.0000 100 chr14:67736285-67736385 1.0000 100 chr7:114737352-114737452 1.0000 100 chr4:89730251-89730351 1.0000 100 chr7:122077830-122077930 1.0000 100 chr1:93590012-93590112 1.0000 100 chr6:64674194-64674294 1.0000 100 chr6:50526111-50526211 1.0000 100 chr1:45917753-45917853 1.0000 100 chr12:107419028-10741912 1.0000 100 chr7:54748066-54748166 1.0000 100 chr2:64076612-64076712 1.0000 100 chr7:70321827-70321927 1.0000 100 chr12:119059937-11906003 1.0000 100 chr1:153424815-153424915 1.0000 100 chr19:15125115-15125215 1.0000 100 chr19:3876815-3876915 1.0000 100 chr5:25424441-25424541 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme cutnotseq_memechip_out/seqs-sampled -oc cutnotseq_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile cutnotseq_memechip_out/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 595 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59500 N= 595 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.282 C 0.218 G 0.218 T 0.282 Background letter frequencies (from cutnotseq_memechip_out/background): A 0.282 C 0.217 G 0.217 T 0.282 ******************************************************************************** ******************************************************************************** MOTIF GSHGCTGTCCRTGGTGCTGAA MEME-1 width = 21 sites = 58 llr = 1172 E-value = 6.1e-246 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSHGCTGTCCRTGGTGCTGAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1141::::::52:::::::87 pos.-specific C :33:a:2:aa11:::3a::12 probability G 76:9::8:::319a:6::a1: matrix T 213::a:a::16::a1:a::1 bits 2.2 * * * 2.0 * ** * * * 1.8 ** *** *** * * 1.5 *** *** *** *** Relative 1.3 ******* *** *** Entropy 1.1 ******* *** *** (29.2 bits) 0.9 * ******* ******** 0.7 ** ******* ********* 0.4 ********** ********* 0.2 ********************* 0.0 --------------------- Multilevel GGAGCTGTCCATGGTGCTGAA consensus TCC GA C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSHGCTGTCCRTGGTGCTGAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr14:93389383-93389483 - 25 4.16e-12 GGGAGGCGGA GGCGCTGTCCGCGGTGCTGAA AACTCGCCGC chr11:122852380-12285248 + 48 5.25e-12 GGCGGGGCGG GGAGCTGTCCGCGGTGCTGAA CACCACCGGC chr16:27807233-27807333 + 72 5.25e-12 CAATCACCCA GCCGCTGTCCGAGGTGCTGAA AGCCTCTC chr19:36370618-36370718 + 34 5.25e-12 CGCCTGTCCT GGAGCTGTCCGCGGTGCTGAA CTGGCCGCGC chr5:145719986-145720086 + 56 8.20e-12 TGAGTGTACT TGTGCTGTCCGTGGTGCTGAA ATTTGCCCTC chr17:78414781-78414881 + 60 8.20e-12 GAAGTGTGCT GCCGCTGTCCTTGGTGCTGAA GTCAAGGCTG chr17:32059122-32059222 + 18 1.50e-11 cttcatgtca ggcgctgtcctaggtgctgaa tatagaatgg chr1:37485989-37486089 + 17 1.73e-11 CCCGGCCCTG GCTGCTCTCCGTGGTGCTGAA CACAGAGGTT chr6:34082988-34083088 - 70 1.97e-11 ACCCCTGGAG GCTGCTGTCCAAGGTCCTGAA CCAGGACCTT chr11:113344827-11334492 - 23 2.18e-11 TCCCACGGTT GCCGCTGTCCTTGGTCCTGAA CTTTCGTTCT chr4:14197716-14197816 - 7 3.30e-11 TGCGCTCCGT GGTGCTGTCCACGGTGCTGAC ACGTTT chr11:61334311-61334411 + 7 3.30e-11 CCCCCC AGAGCTGTCCAAGGTGCTGAA ACAGCTGTCG chr17:45041596-45041696 - 39 3.30e-11 ATAGGCCAGC GAAGCTGTCCGTGGTGCTGAA CACTTGGCTG chr19:4172753-4172853 - 7 3.30e-11 TCCGCCCGCC GCCGCTCTCCAAGGTGCTGAA GTCGTG chr5:132901570-132901670 - 63 4.17e-11 CTGGTAGTGT GCTGCTGTCCATGGTGCTGGA TCCCTAGGGT chr6:39104969-39105069 + 35 4.65e-11 ATACTGTCAT GGAGCTCTCCAGGGTGCTGAA CTATGTCCAT chr20:61747475-61747575 - 25 5.15e-11 GATGGGCCGC GGCGCTGTCCGAGGTTCTGAA CGGCATCTCC chr9:122133014-122133114 - 34 5.15e-11 TTGTGGCTGG AGAGCTGTCCGTGGTGCTGAC TCCTCCTCAT chr6:88146033-88146133 - 52 6.41e-11 CAGCACCAAC TGAGCTGTCCATGGTCCTGAC TACCATACTT chr19:34258692-34258792 + 27 8.17e-11 GAGCGCTGAT GGAGCTGTCCAGGGTCCTGAC GTGCAGCCCA chr8:142526625-142526725 + 32 8.17e-11 TCCCCAGCAT GGCGCTGTCCACGGTGCTGAT TTAGGAAAGT chr18:76472998-76473098 + 51 9.18e-11 CCCCAAGTGT GCTGCTGTCCATGGTCCTGGA GGATTGTCGC chr16:49191651-49191751 + 37 1.02e-10 GGTGTTTGTG TGAGCTGTCCATGGTGCTGAT TAGGCAACTG chr10:132722324-13272242 - 23 1.02e-10 TGGGGCCGGG ACTGCTGTCCATGGTGCTGAC GCAGAACTTC chr10:73554883-73554983 - 53 1.14e-10 GGGACGTGGA GCAGCTCTCCATGGTCCTGAC CAACCCATGC chr11:113861790-11386189 - 27 1.42e-10 CAAACCAGCT GGTGCTGGCCGTGGTGCTGAA GCTCTCATCT chr17:45862985-45863085 + 47 1.42e-10 GTCAGCGCTT TCCGCTGTCCATGGTGCTGGA GGCTGCAAGA chr17:1953198-1953298 - 43 1.58e-10 TGCCTGCGCC GCCGCTGTCCGCGGTGCTGAT CAACGCAGGC chr1:153424815-153424915 - 45 1.75e-10 CAGAGTGTTG TGAGCTGTCCGTGGTGCTGAG TTCACTGTGC chrX:7492300-7492400 - 49 1.75e-10 AGGACTGCTC TCTGCTGTCCCTGGTCCTGAA AGTTGAATAT chrY:16343484-16343584 - 43 1.75e-10 GGGACTGCTC TCTGCTGTCCCTGGTCCTGAA AGTTGAATAT chr9:134651767-134651867 - 36 1.92e-10 TCAGAGCCTG GGAGCTGTCCAGGGTCCTGCA CCGCTTGAGG chr5:151625750-151625850 + 12 2.32e-10 ACGTGGTTCT GCTGCTGTCCGTGGTACTGAA CTGTGTCAGA chr19:58828757-58828857 + 28 2.32e-10 TTACTACAGG Ggagctgtctaaggtgctgaa atgtcctagc chr1:30224866-30224966 + 28 2.54e-10 GCATCCCCTC AGAGCTCTCCGCGGTGCTGAA ACCCACCTGT chr7:153752551-153752651 + 29 2.54e-10 TACTTCGGTG GGAGCTGTCTGAGGTGCTGAA ACCTTCTCTT chr5:170108069-170108169 + 33 2.54e-10 GCCCCAGTGC TGCGCTGTCCGTCGTGCTGAA ATGTGGTGCG chr1:36342486-36342586 - 32 3.10e-10 GGTGACAGGA GGAGCTGTCCCTGGTTCTGAC ACTCTATGCA chr19:57150499-57150599 + 45 3.10e-10 gcctctggtg tgctctgtccatggtgctgaa ctcattcaag chr3:10795584-10795684 - 6 3.42e-10 CAGCTGGCTC GGAGCTCTCCAGGGTCCTGAC GGGTC chr17:4396466-4396566 + 26 3.42e-10 TTGCACGCGG GATGCTCTCCATGGTCCTGAA TCATCGCTGT chr10:26656631-26656731 - 38 3.42e-10 GGGCCCGTGT GCCCCTGTCCTTGGTGCTGAA CCATCCCTTC chr2:133821236-133821336 + 59 4.13e-10 TGCTCCTTCA GGAACTGTCCATGGTGCTGCA ACCCTCCAAA chr22:37040153-37040253 + 59 4.13e-10 GTAGTTGGAA GATGCTCTCCAAGGTGCTGAA GCAAGTGGGG chr6:25652128-25652228 - 47 5.46e-10 TCGGTTCCCG GGAGCTGTCCATGGTGTTGAC GACGAAGACC chr10:59935691-59935791 - 44 5.98e-10 AGATAGACAC AGTGCTGTCCTTGGTTCTGAA ACCACCATAC chr15:88406338-88406438 + 28 6.54e-10 CAGGGGGTTG TTTGCTGTCCCTGGTGCTGAA AACATACACC chr11:77490885-77490985 - 16 7.15e-10 GTATGTGCTA GCCACTGTCCTAGGTGCTGAA GATATAGGCC chr12:2861706-2861806 + 45 9.27e-10 GCGGCGGGTG AGCGCTGTCCCTGGTCCTGGA GAGGTTCCTG chr19:3876815-3876915 - 55 1.10e-09 CCAAAGCCTG GGAGCTGTCCATGGTGCTACA GCCACCACCG chr11:7098180-7098280 - 69 1.41e-09 GTGGGCTCTC GGCGCTGTCCAGGGTCCTGCT TTCTCTGGTG chr1:11113557-11113657 - 56 2.66e-09 ACCAGGGCTG TCCCCTCTCCAAGGTGCTGAA CTCCCGCCTT chr15:31177952-31178052 - 17 2.87e-09 GCCTGGGCCC ATAGCTCTCCAAGGTCCTGAA GGTGCTGGTG chr1:37609387-37609487 - 9 3.89e-09 TGTGTTGTCT GTCACTGTCCATGGTTCTGAA CCGGCACT chr2:50408286-50408386 - 31 5.56e-09 AAAGCATGGA TCTGCTATCCATGGTTCTGAA CCTATTATAA chr7:30711356-30711456 - 51 2.82e-08 CTGGTTCTTA GGAGCTCTCCGAGGTCCCCAA CCTTAGAGAT chr11:23994578-23994678 + 53 1.29e-07 aatgactttg agttctgtcctttgtcctgca cttgtgaata chr11:66056674-66056774 + 62 1.91e-07 TCTCCGCGCG GGTGCTGTCCGTCGTCCGGTG CTGAAAATGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSHGCTGTCCRTGGTGCTGAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:93389383-93389483 4.2e-12 24_[-1]_55 chr11:122852380-12285248 5.2e-12 47_[+1]_32 chr16:27807233-27807333 5.2e-12 71_[+1]_8 chr19:36370618-36370718 5.2e-12 33_[+1]_46 chr5:145719986-145720086 8.2e-12 55_[+1]_24 chr17:78414781-78414881 8.2e-12 59_[+1]_20 chr17:32059122-32059222 1.5e-11 17_[+1]_62 chr1:37485989-37486089 1.7e-11 16_[+1]_63 chr6:34082988-34083088 2e-11 69_[-1]_10 chr11:113344827-11334492 2.2e-11 22_[-1]_57 chr4:14197716-14197816 3.3e-11 6_[-1]_73 chr11:61334311-61334411 3.3e-11 6_[+1]_73 chr17:45041596-45041696 3.3e-11 38_[-1]_41 chr19:4172753-4172853 3.3e-11 6_[-1]_73 chr5:132901570-132901670 4.2e-11 62_[-1]_17 chr6:39104969-39105069 4.6e-11 34_[+1]_45 chr20:61747475-61747575 5.2e-11 24_[-1]_55 chr9:122133014-122133114 5.2e-11 33_[-1]_46 chr6:88146033-88146133 6.4e-11 51_[-1]_28 chr19:34258692-34258792 8.2e-11 26_[+1]_53 chr8:142526625-142526725 8.2e-11 31_[+1]_48 chr18:76472998-76473098 9.2e-11 50_[+1]_29 chr16:49191651-49191751 1e-10 36_[+1]_43 chr10:132722324-13272242 1e-10 22_[-1]_57 chr10:73554883-73554983 1.1e-10 52_[-1]_27 chr11:113861790-11386189 1.4e-10 26_[-1]_53 chr17:45862985-45863085 1.4e-10 46_[+1]_33 chr17:1953198-1953298 1.6e-10 42_[-1]_37 chr1:153424815-153424915 1.7e-10 44_[-1]_35 chrX:7492300-7492400 1.7e-10 48_[-1]_31 chrY:16343484-16343584 1.7e-10 42_[-1]_37 chr9:134651767-134651867 1.9e-10 35_[-1]_44 chr5:151625750-151625850 2.3e-10 11_[+1]_68 chr19:58828757-58828857 2.3e-10 27_[+1]_52 chr1:30224866-30224966 2.5e-10 27_[+1]_52 chr7:153752551-153752651 2.5e-10 28_[+1]_51 chr5:170108069-170108169 2.5e-10 32_[+1]_47 chr1:36342486-36342586 3.1e-10 31_[-1]_48 chr19:57150499-57150599 3.1e-10 44_[+1]_35 chr3:10795584-10795684 3.4e-10 5_[-1]_74 chr17:4396466-4396566 3.4e-10 25_[+1]_54 chr10:26656631-26656731 3.4e-10 37_[-1]_42 chr2:133821236-133821336 4.1e-10 58_[+1]_21 chr22:37040153-37040253 4.1e-10 58_[+1]_21 chr6:25652128-25652228 5.5e-10 46_[-1]_33 chr10:59935691-59935791 6e-10 43_[-1]_36 chr15:88406338-88406438 6.5e-10 27_[+1]_52 chr11:77490885-77490985 7.2e-10 15_[-1]_64 chr12:2861706-2861806 9.3e-10 44_[+1]_35 chr19:3876815-3876915 1.1e-09 54_[-1]_25 chr11:7098180-7098280 1.4e-09 68_[-1]_11 chr1:11113557-11113657 2.7e-09 55_[-1]_24 chr15:31177952-31178052 2.9e-09 16_[-1]_63 chr1:37609387-37609487 3.9e-09 8_[-1]_71 chr2:50408286-50408386 5.6e-09 30_[-1]_49 chr7:30711356-30711456 2.8e-08 50_[-1]_29 chr11:23994578-23994678 1.3e-07 52_[+1]_27 chr11:66056674-66056774 1.9e-07 61_[+1]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSHGCTGTCCRTGGTGCTGAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSHGCTGTCCRTGGTGCTGAA width=21 seqs=58 chr14:93389383-93389483 ( 25) GGCGCTGTCCGCGGTGCTGAA 1 chr11:122852380-12285248 ( 48) GGAGCTGTCCGCGGTGCTGAA 1 chr16:27807233-27807333 ( 72) GCCGCTGTCCGAGGTGCTGAA 1 chr19:36370618-36370718 ( 34) GGAGCTGTCCGCGGTGCTGAA 1 chr5:145719986-145720086 ( 56) TGTGCTGTCCGTGGTGCTGAA 1 chr17:78414781-78414881 ( 60) GCCGCTGTCCTTGGTGCTGAA 1 chr17:32059122-32059222 ( 18) GGCGCTGTCCTAGGTGCTGAA 1 chr1:37485989-37486089 ( 17) GCTGCTCTCCGTGGTGCTGAA 1 chr6:34082988-34083088 ( 70) GCTGCTGTCCAAGGTCCTGAA 1 chr11:113344827-11334492 ( 23) GCCGCTGTCCTTGGTCCTGAA 1 chr4:14197716-14197816 ( 7) GGTGCTGTCCACGGTGCTGAC 1 chr11:61334311-61334411 ( 7) AGAGCTGTCCAAGGTGCTGAA 1 chr17:45041596-45041696 ( 39) GAAGCTGTCCGTGGTGCTGAA 1 chr19:4172753-4172853 ( 7) GCCGCTCTCCAAGGTGCTGAA 1 chr5:132901570-132901670 ( 63) GCTGCTGTCCATGGTGCTGGA 1 chr6:39104969-39105069 ( 35) GGAGCTCTCCAGGGTGCTGAA 1 chr20:61747475-61747575 ( 25) GGCGCTGTCCGAGGTTCTGAA 1 chr9:122133014-122133114 ( 34) AGAGCTGTCCGTGGTGCTGAC 1 chr6:88146033-88146133 ( 52) TGAGCTGTCCATGGTCCTGAC 1 chr19:34258692-34258792 ( 27) GGAGCTGTCCAGGGTCCTGAC 1 chr8:142526625-142526725 ( 32) GGCGCTGTCCACGGTGCTGAT 1 chr18:76472998-76473098 ( 51) GCTGCTGTCCATGGTCCTGGA 1 chr16:49191651-49191751 ( 37) TGAGCTGTCCATGGTGCTGAT 1 chr10:132722324-13272242 ( 23) ACTGCTGTCCATGGTGCTGAC 1 chr10:73554883-73554983 ( 53) GCAGCTCTCCATGGTCCTGAC 1 chr11:113861790-11386189 ( 27) GGTGCTGGCCGTGGTGCTGAA 1 chr17:45862985-45863085 ( 47) TCCGCTGTCCATGGTGCTGGA 1 chr17:1953198-1953298 ( 43) GCCGCTGTCCGCGGTGCTGAT 1 chr1:153424815-153424915 ( 45) TGAGCTGTCCGTGGTGCTGAG 1 chrX:7492300-7492400 ( 49) TCTGCTGTCCCTGGTCCTGAA 1 chrY:16343484-16343584 ( 43) TCTGCTGTCCCTGGTCCTGAA 1 chr9:134651767-134651867 ( 36) GGAGCTGTCCAGGGTCCTGCA 1 chr5:151625750-151625850 ( 12) GCTGCTGTCCGTGGTACTGAA 1 chr19:58828757-58828857 ( 28) GGAGCTGTCTAAGGTGCTGAA 1 chr1:30224866-30224966 ( 28) AGAGCTCTCCGCGGTGCTGAA 1 chr7:153752551-153752651 ( 29) GGAGCTGTCTGAGGTGCTGAA 1 chr5:170108069-170108169 ( 33) TGCGCTGTCCGTCGTGCTGAA 1 chr1:36342486-36342586 ( 32) GGAGCTGTCCCTGGTTCTGAC 1 chr19:57150499-57150599 ( 45) TGCTCTGTCCATGGTGCTGAA 1 chr3:10795584-10795684 ( 6) GGAGCTCTCCAGGGTCCTGAC 1 chr17:4396466-4396566 ( 26) GATGCTCTCCATGGTCCTGAA 1 chr10:26656631-26656731 ( 38) GCCCCTGTCCTTGGTGCTGAA 1 chr2:133821236-133821336 ( 59) GGAACTGTCCATGGTGCTGCA 1 chr22:37040153-37040253 ( 59) GATGCTCTCCAAGGTGCTGAA 1 chr6:25652128-25652228 ( 47) GGAGCTGTCCATGGTGTTGAC 1 chr10:59935691-59935791 ( 44) AGTGCTGTCCTTGGTTCTGAA 1 chr15:88406338-88406438 ( 28) TTTGCTGTCCCTGGTGCTGAA 1 chr11:77490885-77490985 ( 16) GCCACTGTCCTAGGTGCTGAA 1 chr12:2861706-2861806 ( 45) AGCGCTGTCCCTGGTCCTGGA 1 chr19:3876815-3876915 ( 55) GGAGCTGTCCATGGTGCTACA 1 chr11:7098180-7098280 ( 69) GGCGCTGTCCAGGGTCCTGCT 1 chr1:11113557-11113657 ( 56) TCCCCTCTCCAAGGTGCTGAA 1 chr15:31177952-31178052 ( 17) ATAGCTCTCCAAGGTCCTGAA 1 chr1:37609387-37609487 ( 9) GTCACTGTCCATGGTTCTGAA 1 chr2:50408286-50408386 ( 31) TCTGCTATCCATGGTTCTGAA 1 chr7:30711356-30711456 ( 51) GGAGCTCTCCGAGGTCCCCAA 1 chr11:23994578-23994678 ( 53) AGTTCTGTCCTTTGTCCTGCA 1 chr11:66056674-66056774 ( 62) GGTGCTGTCCGTCGTCCGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSHGCTGTCCRTGGTGCTGAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 47600 bayes= 11.6507 E= 6.1e-246 -103 -1250 159 -45 -245 59 139 -245 43 51 -1250 14 -245 -266 202 -303 -1250 220 -1250 -1250 -1250 -1250 -1250 182 -403 -20 187 -1250 -1250 -1250 -365 180 -1250 220 -1250 -1250 -1250 215 -1250 -303 77 -133 51 -123 -33 -85 -133 101 -1250 -266 212 -403 -1250 -1250 220 -1250 -1250 -1250 -1250 182 -403 43 147 -171 -1250 218 -1250 -403 -1250 -365 -365 177 -403 -365 215 -1250 155 -133 -166 -403 139 -49 -266 -203 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSHGCTGTCCRTGGTGCTGAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 58 E= 6.1e-246 0.137931 0.000000 0.655172 0.206897 0.051724 0.327586 0.568966 0.051724 0.379310 0.310345 0.000000 0.310345 0.051724 0.034483 0.879310 0.034483 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.017241 0.189655 0.793103 0.000000 0.000000 0.000000 0.017241 0.982759 0.000000 1.000000 0.000000 0.000000 0.000000 0.965517 0.000000 0.034483 0.482759 0.086207 0.310345 0.120690 0.224138 0.120690 0.086207 0.568966 0.000000 0.034483 0.948276 0.017241 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.017241 0.293103 0.603448 0.086207 0.000000 0.982759 0.000000 0.017241 0.000000 0.017241 0.017241 0.965517 0.017241 0.017241 0.965517 0.000000 0.827586 0.086207 0.068966 0.017241 0.741379 0.155172 0.034483 0.068966 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSHGCTGTCCRTGGTGCTGAA MEME-1 regular expression -------------------------------------------------------------------------------- [GT][GC][ACT]GCTGTCC[AG][TA]GGT[GC]CTGAA -------------------------------------------------------------------------------- Time 322.34 secs. ******************************************************************************** ******************************************************************************** MOTIF GGVSRGSSNVGSGVVGGSGGVGGGSSNSG MEME-2 width = 29 sites = 71 llr = 896 E-value = 1.4e-065 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGVSRGSSNVGSGVVGGSGGVGGGSSNSG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::3:312:2411:232121:3:1:::3:2 pos.-specific C 2345234323242331:3:2421244331 probability G 66354755327474377586467665365 matrix T 111:2::131:1112:2112:212::212 bits 2.2 2.0 1.8 1.5 Relative 1.3 * Entropy 1.1 * * * * (18.2 bits) 0.9 * * * * * * * * * * 0.7 ** * *** * * ** ** ***** * 0.4 ** * *** *** *********** * 0.2 ******** ***** *********** ** 0.0 ----------------------------- Multilevel GGCCGGGGGAGGGGAGGGGGGGGGGGGGG consensus CCAGACCCTCCCCCG C CCT TCCACA sequence G CG C A C C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVSRGSSNVGSGVVGGSGGVGGGSSNSG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr21:47063104-47063204 - 16 2.70e-14 CAGTCAAAGG GGCGGGGGTGGGGCTGGGGGCGGGGCGGG GACCTGGCCC chr2:219826260-219826360 + 72 5.40e-11 GTTTGCGGAG GGAGGGGGGAGGGGGGTAGGCTGGGCCGG chr16:68481834-68481934 + 44 1.21e-09 CAGATCTGGC GGCGGCCGCAGCGGCGGCGGCTCTCGCGG CTCTCGGGTC chr19:7627379-7627479 - 44 1.65e-09 TCAGAGATCT GGAGGGCGCAGGGATATCGGCGGGGGTGG GGGGGCTTGG chr11:122852380-12285248 + 16 2.59e-09 CAGAGGCAGA GGGGAGGGTGCGGGAGGCTCGGGGCGGGG CGGGGAGCTG chr12:120666334-12066643 + 50 2.59e-09 TGGGTCGGGA GGCCGCCCTGGGGCAGGTGGCTGGGCAGA AACAGTGCAC chr8:25315981-25316081 - 72 4.02e-09 . GGCGGGGCTAACGCTGGAGGAGGGGCTGA CTGGTGCTTG chr6:108879100-108879200 - 37 4.02e-09 GCGGTGGGTC TGCCAGCGAAGAGGAGGCGTCGGGGGAGG AAAGTTGCAG chr19:15125115-15125215 + 54 1.07e-08 ggagaagaag ggacaggctgggggacgagggtgtggacg aggcaggaga chr7:108166301-108166401 - 4 1.07e-08 CGCGTCACTT CCGCTGGGGGCGGAGCGGGGCGGGGCTGA GTG chr4:114900545-114900645 - 24 1.40e-08 GACACTCTTG GGACGCGGTAGCCCAGGCGGATCCCCCGG AATCCCGCTG chr15:89955877-89955977 - 53 1.60e-08 GGGGGGAAGA GGGGTCAGTAGGTCGGGGGCGGGGGGTGT TCACAGAGCC chr7:25901633-25901733 - 61 1.82e-08 GGGAAATTGG GCGGAGCCGGGGGCGGGGGGAGATGCTCG CGGTTTCTCA chr5:170108069-170108169 - 4 3.05e-08 GGACAGCGCA GCACTGGGGCGCGACTGGGGAGGCGGGGA CCA chr3:183977767-183977867 + 64 3.05e-08 GGAGAAAGCG CGTCAGCCGCGCGGCCTCGGGGGGCGGCG GCGATGAG chr19:35738576-35738676 - 58 3.46e-08 AACGAGCCAC CTGCGACCGAGGGCGGGGGCGCGGCGCGG CGATCAGCCT chr8:41753313-41753413 - 71 5.01e-08 G CGCGGCGCCCGGTGCGGCGGAGTTGGCGG CACCCGAGCG chr3:9593745-9593845 - 39 5.01e-08 CTTCCACTAC TGCGTGGGCAGCGGGCTGGCGGGCCGCGA GCTCACCTGC chr3:123603132-123603232 - 62 6.38e-08 CTCCGGACTC CGAGGCAGAAGGCGGGTGGGCGTGGCGGG AAGGGCAGCA chr12:2861706-2861806 + 15 6.38e-08 AGCGGCGTCT GCTCGGGCGCGGGGTGTGGCGCGGCGGGT GAGCGCTGTC chr2:219187421-219187521 - 2 6.38e-08 CTTGGGGGGC GGCCTGGCTCCGCCCGGCTGGCGGCCAGG A chr5:39424733-39424833 + 22 7.19e-08 AGCCTCCAGG CTACAGCGCAGCGGATGCGGCGGGCCTCG CTTAAATAGC chr13:22177608-22177708 + 6 1.15e-07 GCCCT CGGGGACTCAGGCCGGGGGCCGGTCCAGG AAGGAGCGAG chr6:5003707-5003807 - 66 1.15e-07 CACGCT GCGCCGGCTTCGGGAGGCGCCGCGGCACT TACTGGTTTG chr1:37609387-37609487 - 48 1.44e-07 GGCGAGGGGT TTGCGGGTGAGGGTTGGGGGAGGGGGGCA GGGGGAGGTG chrX:199827-199927 + 46 1.44e-07 GGGGGCGGCC GTGGTGCCAGGCCCGGGTGGGGGCGGCCG TGTTGCCAGG chr14:100952715-10095281 - 20 1.61e-07 AGCAGCCCCA GGCGGGAGTCCCTGGAGGGCAGGGGGCTG TGCCTCCTCC chrX:119133404-119133504 + 50 1.81e-07 CTGGAAAGGA Ggagagggaaaggaagggagggagggagg gagggaggga chr12:121124075-12112417 + 2 1.81e-07 G AGCCCGCTAAGGGGAGGGGGCGGGGCCTT ATTCTCATGG chr11:66056674-66056774 - 32 1.81e-07 GACAGCACCC GCGCGGAGAAGAGGAGTGGGAGGCGGGTG GAGTCAGCAT chr20:20344458-20344558 - 29 1.81e-07 GCCCATTATT CGGCCGGGGGCCGACGGCGTGGCTGGCCA CCTCTTTTAT chr17:1953198-1953298 + 10 2.02e-07 TAGGGACCC GGACGGGGCGGCCCGATGGCGGCGCCTGC GTTGATCAGC chr19:39340773-39340873 + 36 2.02e-07 TGGATGAAAT GGGGAGCCCCGCCCCAGGGTAGGCGCTCT TTGGTGCAGT chr3:147125221-147125321 - 49 2.02e-07 TTCAAAAAAT GCACGCGGATGCGGGGGGTTGTGGGGACG AAGGTTGCAT chr19:15126503-15126603 + 71 3.11e-07 GGAGAAGAAG GGACAGGCTGAGGGTCGAGGGTGTGGACG A chr19:4172753-4172853 + 28 3.11e-07 GGAGAGCGGC GGCGGGCGGAGTGCGGGGAGGCAGGCGTG GCGCTTCCAA chr20:25061530-25061630 - 34 3.85e-07 GGCAGCTGCG TGGGTCGGGAAGGCCCGGGCCTGTGGTGG TCACCAGCAG chr1:230562015-230562115 + 52 4.27e-07 CTTCCAGCGG TCCGGGCCCGCGGACGGAGTGCGGGCCGA TCCCGCTCAC chr19:18314754-18314854 + 14 4.27e-07 GTCCGCCTCC TGTCCGCCTCGGGGAGGCGGGGCCCCTCA GCGTTCTCTC chr1:33358377-33358477 + 27 5.25e-07 TACTTACCCC CGACGCGCGTGCCCCGGGGCACGCGCTCC TGAGCCCGCC chr19:36360512-36360612 + 52 5.25e-07 TAGAGGTGTA GGGGGGAGTGGCGAAAGGATAGGCGGGGC TAAGACAGAA chr17:78414781-78414881 + 3 5.82e-07 GG GCCCGCCTCACTGTCGGGGGCTGCGCTGG GCCTGCCTCA chr1:116106727-116106827 - 71 7.12e-07 C GGCGGCAGCGGCGGCGGCGGCGATCAGGC GCCATAGGCA chr19:45873395-45873495 - 27 7.12e-07 GGGGGCTGGG GGTCGCGCTCGCTAGCGGGCGCGGGGGGT CTTGAAGATG chr10:112678742-11267884 + 72 7.87e-07 TAGCCCGGCT AGCCAGAGGCGCCCAGTGGGCGGGAGACG chr12:3599636-3599736 - 2 8.69e-07 CTCCCACCTA GGGCGAGGTCCGGGCGAGACCGGGCCACA G chr16:24266862-24266962 + 12 1.55e-06 CTGGCTGACC CGGGAAGGAACGGGGGAAGGGCGGGGTGA GGGAAGAAAG chr20:48099056-48099156 - 36 1.86e-06 ACTCTAAGGG GCGGACAGCGCCCCGGGCGGCTGGGTCGC GCCTGGGCCG chr21:34143404-34143504 + 22 2.24e-06 GCCCCGGCAG CGCCGAGCTCGTGACGGCGCACGCGCGCT CTCCGGAGCT chr10:132722324-13272242 + 45 2.45e-06 GACAGCAGTC CCGGCCCCAGGCCGCAGGACCTGGGGAGG GGCCACATCA chr12:56415038-56415138 - 29 3.21e-06 TGCCGGTGAG ACCCTGGGGTGCGAACGCGGCCGCCGCCT TGGAAACGGC chr13:95357390-95357490 + 2 3.21e-06 G CCAGAGCTCAGCCCCGGCGCATTCGCAGG GACGTGTCAG chr20:44669178-44669278 + 72 4.54e-06 TCCACTCCAT CCACTGCTCAGAGGTGGAGGGCGGCCCCC chr8:50823846-50823946 - 23 4.94e-06 TGAAGTAAGG GGACGGGAGCCCCTAAGCGCAGGTCCAGG TCGCACTTTC chr22:39941768-39941868 + 13 5.37e-06 ACCACGGACA GCAGCCCGGCGCGCAGTTGGCGTGCGGTT GGCTCAGGAA chr6:69942390-69942490 - 55 5.37e-06 CAAGCAGGCG GCGGTGCGGCGTGCAGAGAGCTGTCCAGC GCCGGAGGTG chr19:54098289-54098389 + 28 5.84e-06 atttaagtgg ggccaccggagcggcattgttggtccagg tgcagccgag chr17:40332037-40332137 - 40 6.90e-06 TTGGATTGAG GTCGCGCGCCCCCAAATCGTGGGGCGTCA GTGTCTAAGG chr19:57150499-57150599 - 2 8.12e-06 AGAGGCAAAG GCCCTGAGGAACCAACAGGGAGGTGGTGT G chr20:10197994-10198094 - 72 8.12e-06 . CCCCGGGGTACCCGTGCAGGCTGCCTCGG GGGGCCCTCG chr19:42644174-42644274 - 37 8.80e-06 TTTGGACAGC TCCCTGCGCTGGGATGACAGCGGCGGCCT CTGAGCCTGC chr11:82996845-82996945 + 39 8.80e-06 CCAGCGGCCA TTACGCGCTTGGGTCGGGGGAGATGGAGT CGCATTTAGC chr11:7098180-7098280 + 1 9.53e-06 . CGCCTGGTAGGGGCGTGGGTGCGGCTGGA AAGGAGGTGA chr6:116427735-116427835 + 51 1.03e-05 tccagctact ggagagactaaggtgggaggattgcctga acccaggagg chr3:185451670-185451770 - 32 1.30e-05 CCATGGCTAG GGAGAGAGGTGCCGGAGCAGAGGTGAGCA GCTGCCTAGA chr16:16064748-16064848 + 69 1.52e-05 gtaccatgat ctgcacacttggggaggtgtggtggcggc cat chr8:57357747-57357847 - 14 1.77e-05 GACTATCTGG GGACCGGTAAGGGTAGCGGTGTCGCCGCA CAAACCAAGT chr20:44650369-44650469 + 53 1.90e-05 GGGCACTAAA GGGGCGGGGACATCTCGAGTAGGGAGCGG GACCAGAGTG chr12:113658757-11365885 - 55 2.37e-05 CGGTACTCCC TGCCCGCCTCCTTAAGAAGGGGCGGGACG AAGAATCCAC chr20:10199206-10199306 - 50 2.37e-05 ATAAATCAAG TCCGCGGGGCATGGAGGCTGCTGTCGCTG CAGCAGCTCA chr21:26980537-26980637 - 17 6.58e-05 TTTGGGCCAA GGAGACGGTCGATCTATCGTGGCGCAGGG TCATATTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVSRGSSNVGSGVVGGSGGVGGGSSNSG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:47063104-47063204 2.7e-14 15_[-2]_56 chr2:219826260-219826360 5.4e-11 71_[+2] chr16:68481834-68481934 1.2e-09 43_[+2]_28 chr19:7627379-7627479 1.6e-09 43_[-2]_28 chr11:122852380-12285248 2.6e-09 15_[+2]_56 chr12:120666334-12066643 2.6e-09 49_[+2]_22 chr8:25315981-25316081 4e-09 71_[-2] chr6:108879100-108879200 4e-09 36_[-2]_35 chr19:15125115-15125215 1.1e-08 53_[+2]_18 chr7:108166301-108166401 1.1e-08 3_[-2]_68 chr4:114900545-114900645 1.4e-08 23_[-2]_48 chr15:89955877-89955977 1.6e-08 52_[-2]_19 chr7:25901633-25901733 1.8e-08 60_[-2]_11 chr5:170108069-170108169 3.1e-08 3_[-2]_68 chr3:183977767-183977867 3.1e-08 63_[+2]_8 chr19:35738576-35738676 3.5e-08 57_[-2]_14 chr8:41753313-41753413 5e-08 70_[-2]_1 chr3:9593745-9593845 5e-08 38_[-2]_33 chr3:123603132-123603232 6.4e-08 61_[-2]_10 chr12:2861706-2861806 6.4e-08 14_[+2]_57 chr2:219187421-219187521 6.4e-08 1_[-2]_70 chr5:39424733-39424833 7.2e-08 21_[+2]_50 chr13:22177608-22177708 1.1e-07 5_[+2]_66 chr6:5003707-5003807 1.1e-07 65_[-2]_6 chr1:37609387-37609487 1.4e-07 47_[-2]_24 chrX:199827-199927 1.4e-07 45_[+2]_26 chr14:100952715-10095281 1.6e-07 19_[-2]_52 chrX:119133404-119133504 1.8e-07 49_[+2]_22 chr12:121124075-12112417 1.8e-07 1_[+2]_70 chr11:66056674-66056774 1.8e-07 31_[-2]_40 chr20:20344458-20344558 1.8e-07 28_[-2]_43 chr17:1953198-1953298 2e-07 9_[+2]_62 chr19:39340773-39340873 2e-07 35_[+2]_36 chr3:147125221-147125321 2e-07 48_[-2]_23 chr19:15126503-15126603 3.1e-07 70_[+2]_1 chr19:4172753-4172853 3.1e-07 27_[+2]_44 chr20:25061530-25061630 3.8e-07 33_[-2]_38 chr1:230562015-230562115 4.3e-07 51_[+2]_20 chr19:18314754-18314854 4.3e-07 13_[+2]_58 chr1:33358377-33358477 5.3e-07 26_[+2]_45 chr19:36360512-36360612 5.3e-07 51_[+2]_20 chr17:78414781-78414881 5.8e-07 2_[+2]_69 chr1:116106727-116106827 7.1e-07 70_[-2]_1 chr19:45873395-45873495 7.1e-07 26_[-2]_45 chr10:112678742-11267884 7.9e-07 71_[+2] chr12:3599636-3599736 8.7e-07 1_[-2]_70 chr16:24266862-24266962 1.5e-06 11_[+2]_60 chr20:48099056-48099156 1.9e-06 35_[-2]_36 chr21:34143404-34143504 2.2e-06 21_[+2]_50 chr10:132722324-13272242 2.5e-06 44_[+2]_27 chr12:56415038-56415138 3.2e-06 28_[-2]_43 chr13:95357390-95357490 3.2e-06 1_[+2]_70 chr20:44669178-44669278 4.5e-06 71_[+2] chr8:50823846-50823946 4.9e-06 22_[-2]_49 chr22:39941768-39941868 5.4e-06 12_[+2]_59 chr6:69942390-69942490 5.4e-06 54_[-2]_17 chr19:54098289-54098389 5.8e-06 27_[+2]_44 chr17:40332037-40332137 6.9e-06 39_[-2]_32 chr19:57150499-57150599 8.1e-06 1_[-2]_70 chr20:10197994-10198094 8.1e-06 71_[-2] chr19:42644174-42644274 8.8e-06 36_[-2]_35 chr11:82996845-82996945 8.8e-06 38_[+2]_33 chr11:7098180-7098280 9.5e-06 [+2]_71 chr6:116427735-116427835 1e-05 50_[+2]_21 chr3:185451670-185451770 1.3e-05 31_[-2]_40 chr16:16064748-16064848 1.5e-05 68_[+2]_3 chr8:57357747-57357847 1.8e-05 13_[-2]_58 chr20:44650369-44650469 1.9e-05 52_[+2]_19 chr12:113658757-11365885 2.4e-05 54_[-2]_17 chr20:10199206-10199306 2.4e-05 49_[-2]_22 chr21:26980537-26980637 6.6e-05 16_[-2]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVSRGSSNVGSGVVGGSGGVGGGSSNSG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGVSRGSSNVGSGVVGGSGGVGGGSSNSG width=29 seqs=71 chr21:47063104-47063204 ( 16) GGCGGGGGTGGGGCTGGGGGCGGGGCGGG 1 chr2:219826260-219826360 ( 72) GGAGGGGGGAGGGGGGTAGGCTGGGCCGG 1 chr16:68481834-68481934 ( 44) GGCGGCCGCAGCGGCGGCGGCTCTCGCGG 1 chr19:7627379-7627479 ( 44) GGAGGGCGCAGGGATATCGGCGGGGGTGG 1 chr11:122852380-12285248 ( 16) GGGGAGGGTGCGGGAGGCTCGGGGCGGGG 1 chr12:120666334-12066643 ( 50) GGCCGCCCTGGGGCAGGTGGCTGGGCAGA 1 chr8:25315981-25316081 ( 72) GGCGGGGCTAACGCTGGAGGAGGGGCTGA 1 chr6:108879100-108879200 ( 37) TGCCAGCGAAGAGGAGGCGTCGGGGGAGG 1 chr19:15125115-15125215 ( 54) GGACAGGCTGGGGGACGAGGGTGTGGACG 1 chr7:108166301-108166401 ( 4) CCGCTGGGGGCGGAGCGGGGCGGGGCTGA 1 chr4:114900545-114900645 ( 24) GGACGCGGTAGCCCAGGCGGATCCCCCGG 1 chr15:89955877-89955977 ( 53) GGGGTCAGTAGGTCGGGGGCGGGGGGTGT 1 chr7:25901633-25901733 ( 61) GCGGAGCCGGGGGCGGGGGGAGATGCTCG 1 chr5:170108069-170108169 ( 4) GCACTGGGGCGCGACTGGGGAGGCGGGGA 1 chr3:183977767-183977867 ( 64) CGTCAGCCGCGCGGCCTCGGGGGGCGGCG 1 chr19:35738576-35738676 ( 58) CTGCGACCGAGGGCGGGGGCGCGGCGCGG 1 chr8:41753313-41753413 ( 71) CGCGGCGCCCGGTGCGGCGGAGTTGGCGG 1 chr3:9593745-9593845 ( 39) TGCGTGGGCAGCGGGCTGGCGGGCCGCGA 1 chr3:123603132-123603232 ( 62) CGAGGCAGAAGGCGGGTGGGCGTGGCGGG 1 chr12:2861706-2861806 ( 15) GCTCGGGCGCGGGGTGTGGCGCGGCGGGT 1 chr2:219187421-219187521 ( 2) GGCCTGGCTCCGCCCGGCTGGCGGCCAGG 1 chr5:39424733-39424833 ( 22) CTACAGCGCAGCGGATGCGGCGGGCCTCG 1 chr13:22177608-22177708 ( 6) CGGGGACTCAGGCCGGGGGCCGGTCCAGG 1 chr6:5003707-5003807 ( 66) GCGCCGGCTTCGGGAGGCGCCGCGGCACT 1 chr1:37609387-37609487 ( 48) TTGCGGGTGAGGGTTGGGGGAGGGGGGCA 1 chrX:199827-199927 ( 46) GTGGTGCCAGGCCCGGGTGGGGGCGGCCG 1 chr14:100952715-10095281 ( 20) GGCGGGAGTCCCTGGAGGGCAGGGGGCTG 1 chrX:119133404-119133504 ( 50) GGAGAGGGAAAGGAAGGGAGGGAGGGAGG 1 chr12:121124075-12112417 ( 2) AGCCCGCTAAGGGGAGGGGGCGGGGCCTT 1 chr11:66056674-66056774 ( 32) GCGCGGAGAAGAGGAGTGGGAGGCGGGTG 1 chr20:20344458-20344558 ( 29) CGGCCGGGGGCCGACGGCGTGGCTGGCCA 1 chr17:1953198-1953298 ( 10) GGACGGGGCGGCCCGATGGCGGCGCCTGC 1 chr19:39340773-39340873 ( 36) GGGGAGCCCCGCCCCAGGGTAGGCGCTCT 1 chr3:147125221-147125321 ( 49) GCACGCGGATGCGGGGGGTTGTGGGGACG 1 chr19:15126503-15126603 ( 71) GGACAGGCTGAGGGTCGAGGGTGTGGACG 1 chr19:4172753-4172853 ( 28) GGCGGGCGGAGTGCGGGGAGGCAGGCGTG 1 chr20:25061530-25061630 ( 34) TGGGTCGGGAAGGCCCGGGCCTGTGGTGG 1 chr1:230562015-230562115 ( 52) TCCGGGCCCGCGGACGGAGTGCGGGCCGA 1 chr19:18314754-18314854 ( 14) TGTCCGCCTCGGGGAGGCGGGGCCCCTCA 1 chr1:33358377-33358477 ( 27) CGACGCGCGTGCCCCGGGGCACGCGCTCC 1 chr19:36360512-36360612 ( 52) GGGGGGAGTGGCGAAAGGATAGGCGGGGC 1 chr17:78414781-78414881 ( 3) GCCCGCCTCACTGTCGGGGGCTGCGCTGG 1 chr1:116106727-116106827 ( 71) GGCGGCAGCGGCGGCGGCGGCGATCAGGC 1 chr19:45873395-45873495 ( 27) GGTCGCGCTCGCTAGCGGGCGCGGGGGGT 1 chr10:112678742-11267884 ( 72) AGCCAGAGGCGCCCAGTGGGCGGGAGACG 1 chr12:3599636-3599736 ( 2) GGGCGAGGTCCGGGCGAGACCGGGCCACA 1 chr16:24266862-24266962 ( 12) CGGGAAGGAACGGGGGAAGGGCGGGGTGA 1 chr20:48099056-48099156 ( 36) GCGGACAGCGCCCCGGGCGGCTGGGTCGC 1 chr21:34143404-34143504 ( 22) CGCCGAGCTCGTGACGGCGCACGCGCGCT 1 chr10:132722324-13272242 ( 45) CCGGCCCCAGGCCGCAGGACCTGGGGAGG 1 chr12:56415038-56415138 ( 29) ACCCTGGGGTGCGAACGCGGCCGCCGCCT 1 chr13:95357390-95357490 ( 2) CCAGAGCTCAGCCCCGGCGCATTCGCAGG 1 chr20:44669178-44669278 ( 72) CCACTGCTCAGAGGTGGAGGGCGGCCCCC 1 chr8:50823846-50823946 ( 23) GGACGGGAGCCCCTAAGCGCAGGTCCAGG 1 chr22:39941768-39941868 ( 13) GCAGCCCGGCGCGCAGTTGGCGTGCGGTT 1 chr6:69942390-69942490 ( 55) GCGGTGCGGCGTGCAGAGAGCTGTCCAGC 1 chr19:54098289-54098389 ( 28) GGCCACCGGAGCGGCATTGTTGGTCCAGG 1 chr17:40332037-40332137 ( 40) GTCGCGCGCCCCCAAATCGTGGGGCGTCA 1 chr19:57150499-57150599 ( 2) GCCCTGAGGAACCAACAGGGAGGTGGTGT 1 chr20:10197994-10198094 ( 72) CCCCGGGGTACCCGTGCAGGCTGCCTCGG 1 chr19:42644174-42644274 ( 37) TCCCTGCGCTGGGATGACAGCGGCGGCCT 1 chr11:82996845-82996945 ( 39) TTACGCGCTTGGGTCGGGGGAGATGGAGT 1 chr11:7098180-7098280 ( 1) CGCCTGGTAGGGGCGTGGGTGCGGCTGGA 1 chr6:116427735-116427835 ( 51) GGAGAGACTAAGGTGGGAGGATTGCCTGA 1 chr3:185451670-185451770 ( 32) GGAGAGAGGTGCCGGAGCAGAGGTGAGCA 1 chr16:16064748-16064848 ( 69) CTGCACACTTGGGGAGGTGTGGTGGCGGC 1 chr8:57357747-57357847 ( 14) GGACCGGTAAGGGTAGCGGTGTCGCCGCA 1 chr20:44650369-44650469 ( 53) GGGGCGGGGACATCTCGAGTAGGGAGCGG 1 chr12:113658757-11365885 ( 55) TGCCCGCCTCCTTAAGAAGGGGCGGGACG 1 chr20:10199206-10199306 ( 50) TCCGCGGGGCATGGAGGCTGCTGTCGCTG 1 chr21:26980537-26980637 ( 17) GGAGACGGTCGATCTATCGTGGCGCAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVSRGSSNVGSGVVGGSGGVGGGSSNSG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 42840 bayes= 11.4043 E= 1.4e-065 -274 14 141 -100 -1279 37 151 -152 7 69 44 -233 -1279 130 110 -1279 -16 -49 91 -63 -200 30 161 -1279 -74 69 114 -1279 -432 57 134 -133 -87 5 51 13 48 30 5 -133 -152 5 164 -1279 -200 91 101 -174 -1279 14 161 -152 -52 57 86 -174 20 22 30 -87 -87 -63 161 -274 -174 -295 169 -63 -87 57 105 -200 -133 -1279 193 -233 -1279 14 141 -63 -8 69 75 -432 -1279 -36 144 -24 -200 -78 172 -174 -1279 -4 137 -33 -332 81 144 -1279 -274 96 118 -274 -16 22 30 -33 -1279 57 144 -174 -33 -95 118 -74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVSRGSSNVGSGVVGGSGGVGGGSSNSG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 71 E= 1.4e-065 0.042254 0.239437 0.577465 0.140845 0.000000 0.281690 0.619718 0.098592 0.295775 0.352113 0.295775 0.056338 0.000000 0.535211 0.464789 0.000000 0.253521 0.154930 0.408451 0.183099 0.070423 0.267606 0.661972 0.000000 0.169014 0.352113 0.478873 0.000000 0.014085 0.323944 0.549296 0.112676 0.154930 0.225352 0.309859 0.309859 0.394366 0.267606 0.225352 0.112676 0.098592 0.225352 0.676056 0.000000 0.070423 0.408451 0.436620 0.084507 0.000000 0.239437 0.661972 0.098592 0.197183 0.323944 0.394366 0.084507 0.323944 0.253521 0.267606 0.154930 0.154930 0.140845 0.661972 0.042254 0.084507 0.028169 0.704225 0.183099 0.154930 0.323944 0.450704 0.070423 0.112676 0.000000 0.830986 0.056338 0.000000 0.239437 0.577465 0.183099 0.267606 0.352113 0.366197 0.014085 0.000000 0.169014 0.591549 0.239437 0.070423 0.126761 0.718310 0.084507 0.000000 0.211268 0.563380 0.225352 0.028169 0.380282 0.591549 0.000000 0.042254 0.422535 0.492958 0.042254 0.253521 0.253521 0.267606 0.225352 0.000000 0.323944 0.591549 0.084507 0.225352 0.112676 0.492958 0.169014 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGVSRGSSNVGSGVVGGSGGVGGGSSNSG MEME-2 regular expression -------------------------------------------------------------------------------- [GC][GC][CAG][CG][GA][GC][GC][GC][GTC][ACG][GC][GC][GC][GC][AGC]GG[GC]G[GC][GCA][GT]G[GTC][GC][GC][GACT][GC][GA] -------------------------------------------------------------------------------- Time 606.82 secs. ******************************************************************************** ******************************************************************************** MOTIF TATGYWAATK MEME-3 width = 10 sites = 105 llr = 1013 E-value = 3.8e-055 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATGYWAATK MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2a:::6aa:: pos.-specific C 1:::6::::1 probability G :::a:::::5 matrix T 7:a:44::a4 bits 2.2 * 2.0 * 1.8 *** * 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 **** *** (13.9 bits) 0.9 ******** 0.7 ********** 0.4 ********** 0.2 ********** 0.0 ---------- Multilevel TATGCAAATG consensus TT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGYWAATK MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------- chr12:2888513-2888613 + 62 1.47e-06 atgcaaacta tatgcaaatg agcagcctgg chr5:51627523-51627623 + 53 1.47e-06 CTGAGCTATG TATGCAAATG AAGCTATGCC chr6:11026274-11026374 - 29 1.47e-06 ATTTTAAGGC TATGCAAATG AGTTGGCGGG chr3:123603132-123603232 - 24 1.47e-06 CCCCGAGCGC TATGCAAATG TCATGCAAAT chr12:77266046-77266146 - 25 1.47e-06 AGCTTTTTAG TATGCAAATG CAGGGCGCCA chr3:21683227-21683327 + 73 1.47e-06 tttcacaccc tatgcaaatg gcacacctag chr20:34996546-34996646 + 13 1.47e-06 atatgtataa tatgcaaatg taatgggatc chr17:64773528-64773628 - 45 1.47e-06 CATGTTAGCA TATGCAAATG TGACTCTTAA chr3:142585397-142585497 - 88 1.47e-06 TAT TATGCAAATG TGGCTTCTAC chr16:16064748-16064848 + 45 1.47e-06 agccttttaa tatgcaaatg cagggtacca chr6:26123916-26124016 + 44 2.94e-06 ATAGGGCTTT TATGCTAATG AGGGATGGAG chr14:67957819-67957919 - 24 2.94e-06 CACCTGAGTT TATGCTAATG AAGTTACTGG chr9:86295041-86295141 + 9 2.94e-06 ttgatcat tatgctaatg aagtgactta chr14:97880202-97880302 - 66 2.94e-06 ACCTAATTGG TATGCTAATG CCCAGAGCTG chr2:24248976-24249076 + 79 2.94e-06 gatctgagtt tatgctaatg atgtgactgg chr7:66643943-66644043 + 89 2.94e-06 gggagtgtct tatgctaatg aa chr1:196577821-196577921 - 14 2.94e-06 GTCACTGTGC TATGCTAATG AGGGGGAGTC chr13:93877742-93877842 - 91 2.94e-06 . TATGCTAATG GACGCACTAA chr5:25424441-25424541 + 1 4.84e-06 . TATGCAAATT AGCATATTTC chr15:90942372-90942472 + 31 4.84e-06 attattttct tatgcaaatt ttctgttttt chr5:49706649-49706749 + 44 4.84e-06 ATTCTGTAAA TATGCAAATT AGAATATTAG chr5:25568300-25568400 + 60 4.84e-06 tttcctttaa tatgcaaatt tagggctact chr5:106404415-106404515 + 42 4.84e-06 CTTCTATTAA TATGCAAATT TTGTTCTTTA chr2:192765638-192765738 - 2 4.84e-06 CCTTGTTATT TATGCAAATT T chrX:16596844-16596944 + 72 4.84e-06 tttcctttca tatgcaaatt taaagctatt chr4:81416971-81417071 + 52 4.84e-06 tttttttagt tatgcaaatt tctccagcaa chr3:75303769-75303869 - 5 6.74e-06 CTTTGTGTGC TATGTAAATG GCAC chr5:133435765-133435865 - 58 6.74e-06 AATGTGAATG TATGTAAATG AGGGGGATAC chr10:23164840-23164940 - 42 6.74e-06 TATTCATTGT TATGTAAATG ATTCTTTTTG chr11:94389966-94390066 - 90 6.74e-06 C TATGTAAATG GAGAGGATGA chr17:42588676-42588776 + 22 6.74e-06 caacctttga tatgtaaatg caggtcatca chr6:65900602-65900702 + 22 8.64e-06 TGACAATCTG TATGCTAATT CTGAAACATT chr3:152811324-152811424 + 3 8.64e-06 ca tatgctaatt agtcaagtct chr9:36560613-36560713 - 78 8.64e-06 CTGCTTATCA TATGCTAATT ATAATACATT chr3:186682688-186682788 - 7 8.64e-06 GGGACTTCAT TATGCTAATT TATTAG chr4:157935939-157936039 + 47 8.64e-06 caaagtaggc tatgctaatt agatgcattc chr6:42746996-42747096 + 1 8.64e-06 . TATGCTAATT TATGCAAAGA chr6:62737045-62737145 + 60 1.05e-05 cacctgagtt tatgttaatg aggtgacttt chr17:56642932-56643032 - 76 1.05e-05 GTTCCCGGGT TATGTTAATG CTGCAAGTCT chr2:238239156-238239256 - 69 1.05e-05 TTCGTTTGCA TATGTTAATG TTTGCCCATT chr3:31183397-31183497 + 5 1.05e-05 TTCA TATGTTAAtg taaaccaaaa chr4:159195174-159195274 + 2 1.30e-05 t tatgtaaatt aacgtgctgt chr8:51364634-51364734 + 36 1.30e-05 TGCAGATTCC TATGTAAATT TTAAATATAG chr1:197242326-197242426 - 30 1.30e-05 TCGAATAATT TATGTAAATT TTTCCCTCCA chr7:115725961-115726061 - 51 1.30e-05 TTATTTCGAA TATGTAAATT TGAGTTGAGG chr1:210580637-210580737 - 29 1.30e-05 TCATTTTGTG TATGTAAATT GGGTGGAAGA chrX:54414037-54414137 - 69 1.30e-05 TTCTCTTAGT TATGTAAATT GAAGGCAAGA chr7:150351751-150351851 - 20 1.30e-05 TGGATTTGCA TATGTAAATT TGCACGCATG chr4:29268281-29268381 + 33 1.30e-05 gaagtctgca tatgtaaatt agaaactgtt chr1:63770092-63770192 - 13 1.30e-05 TACTTTTTGT TATGTAAATT AATGTACATA chr4:135994458-135994558 + 49 1.45e-05 AAGGTATTTT AATGCAAATG AGATCCGCAT chr1:183603054-183603154 + 19 1.45e-05 AAAAAGATGT AATGCAAATG CGAAGCCAAA chr13:100847586-10084768 - 46 1.45e-05 AATGTTTAAG AATGCAAATG AAGTATTTTG chr3:79251865-79251965 - 30 1.45e-05 AGCAATTGAG AATGCAAATG AGAATTACAC chr12:107419028-10741912 - 20 1.69e-05 GAGCTTCGCA TATGTTAATT TATTTAATCT chr2:120060581-120060681 - 87 1.69e-05 AGAG TATGTTAATT GAGTGCTCAG chr8:71291900-71292000 - 4 1.69e-05 GCTTAAGCTG TATGTTAATT ACT chr2:166720760-166720860 - 29 1.69e-05 GGAGGTCAGC TATGTTAATT CCACAGCGCC chr8:74218666-74218766 - 4 1.69e-05 TAGGGGGCAG TATGTTAATT ACA chr3:143190435-143190535 + 28 1.69e-05 AAGGGATTCT TATGTTAATT ATGTTGATGT chr16:19894528-19894628 - 32 1.81e-05 AGTTAAACTG CATGCAAATG ACATGTAAAT chr5:127882215-127882315 + 55 1.81e-05 tatcctttag catgcaaatg cattataatt chr2:48735836-48735936 - 48 1.81e-05 TGTTGAAACA CATGCAAATG CTATGTCAAC chr2:171536667-171536767 - 88 1.95e-05 ATA AATGCTAATG GAGGTAATTC chr4:75411772-75411872 + 71 1.95e-05 GTTTTCATTA AATGCTAATG CACCCATGTC chr21:18201788-18201888 + 20 1.95e-05 gaacaatggg aatgctaatg cttacctcaa chr17:63738522-63738622 + 60 2.14e-05 CAAAGAACAG AATGCAAATT GGAAGCTGAC chr13:95357390-95357490 - 54 2.14e-05 TTAATGGAAT AATGCAAATT ATAGCCTGCC chr3:79817637-79817737 + 79 2.14e-05 GTTCATTAGT AATGCAAATT GGCATAACAA chr4:62513975-62514075 - 42 2.14e-05 AAAAATTCCT AATGCAAATT AATCTGTGAC chr20:50575432-50575532 + 79 2.45e-05 TTATCTGCGG CATGCTAATG CTGCTTCCTG chr20:19730131-19730231 - 13 2.45e-05 TGTCTTTTAG CATGCTAATG TATTATAATT chr9:17332033-17332133 + 78 2.45e-05 TGAAAGAAAC AATGTAAATG TAAATGAATA chr14:52718419-52718519 - 81 2.45e-05 AATACCATTA AATGTAAATG AACTAAAGTT chr12:119059937-11906003 + 22 2.74e-05 CATATttcca tatgcaaatc aactgataga chr2:12403735-12403835 + 65 2.74e-05 cctttttact catgcaaatt tctgcagccc chr7:25901633-25901733 + 43 2.89e-05 AGTGTGGCTG CATGTAAATG AGAAACCGCG chr1:187016426-187016526 + 19 3.08e-05 AAACTTTGTA AATGCTAATT CTTTTAAACC chr9:138211541-138211641 - 53 3.08e-05 TACTGATTCA AATGCTAATT CCTGCTGAAA chr4:171942509-171942609 - 77 3.27e-05 CTTTCTCTAT AATGTTAATG AGAAAAAAAT chr3:25789597-25789697 - 74 4.00e-05 TGTAAGGTTT TATGCTAATC TAGCTAGGAA chr11:69453597-69453697 + 34 4.00e-05 CCCATTGGCT CATGCTAATT CCAGTTTCCT chr9:30630247-30630347 + 33 4.00e-05 AGGTACACAA TATGCAAATA CCTTTCTATT chr3:167371350-167371450 - 18 4.14e-05 AAAACTACAA CATGTTAATG GAAGCAAGGT chr10:76623127-76623227 + 38 4.14e-05 taccttttgt catgttaatg tagtagaggg chr16:19872089-19872189 - 90 4.64e-05 T TATGTAAATC AGGGATGGTC chr15:89950462-89950562 + 90 4.64e-05 AGGCAGCATT TATGCAAACG C chr3:95647090-95647190 + 84 4.64e-05 GCAGAAAAAA TATGTAAATC ATTTTCA chr9:37226172-37226272 - 75 4.64e-05 TTGGTATCTT TATGTAAATC TACTAGATTC chr11:106636240-10663634 + 62 4.64e-05 ATGGAATCTA CATGTAAATT TGGTCTTGTA chr1:85410484-85410584 + 44 4.64e-05 TCTAGGAGAA TATGTAAATC TTAAAAGAGC chr1:17193266-17193366 - 10 4.79e-05 CCCTGTTGAA TATGCATATG TGGCCCACC chr11:103834276-10383437 + 13 4.79e-05 AAAAACAATC TATGCATATG CTAGCTAATT chr11:115279797-11527989 - 85 5.22e-05 CTTTGG TATGCTAATA TTTAACAATG chr9:3361858-3361958 + 62 5.22e-05 TTGCATATTC AATGTTAATT ACAAAGTTGC chr5:134951177-134951277 - 4 6.25e-05 AAACTTCAGT TATGCAAACT ATG chr10:91847324-91847424 + 39 6.78e-05 tgtatgtgtg tatgtatatg tgtacgtgta chr20:771666-771766 - 23 7.17e-05 AAGATCCAGC TATGTTAATA GAGATTCTTT chr21:24596062-24596162 + 90 7.17e-05 ATCACATTTA TATGTTAATA G chr18:40125026-40125126 - 24 8.30e-05 GAGTTTTAAT TATGTAAACT AGTGACTTGG chr1:243895519-243895619 + 27 8.88e-05 TGCAGCTAAT TATGTATATT CAAGTGATTA chrX:22061207-22061307 + 76 1.00e-04 catgcattta tatGGTAatg tgcccaacac chr6:25899185-25899285 - 26 1.24e-04 CTTGCTCTGT TACGTAAATG TATGTGTGTG chr1:232260198-232260298 - 3 1.34e-04 CAAATTAGAT AATGTAAACG AA chr2:63844682-63844782 + 3 1.76e-04 ca tatGCATATA TGTACACATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGYWAATK MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:2888513-2888613 1.5e-06 61_[+3]_29 chr5:51627523-51627623 1.5e-06 52_[+3]_38 chr6:11026274-11026374 1.5e-06 28_[-3]_62 chr3:123603132-123603232 1.5e-06 23_[-3]_67 chr12:77266046-77266146 1.5e-06 24_[-3]_66 chr3:21683227-21683327 1.5e-06 72_[+3]_18 chr20:34996546-34996646 1.5e-06 12_[+3]_78 chr17:64773528-64773628 1.5e-06 44_[-3]_46 chr3:142585397-142585497 1.5e-06 87_[-3]_3 chr16:16064748-16064848 1.5e-06 44_[+3]_46 chr6:26123916-26124016 2.9e-06 43_[+3]_47 chr14:67957819-67957919 2.9e-06 23_[-3]_67 chr9:86295041-86295141 2.9e-06 8_[+3]_82 chr14:97880202-97880302 2.9e-06 65_[-3]_25 chr2:24248976-24249076 2.9e-06 78_[+3]_12 chr7:66643943-66644043 2.9e-06 88_[+3]_2 chr1:196577821-196577921 2.9e-06 13_[-3]_77 chr13:93877742-93877842 2.9e-06 90_[-3] chr5:25424441-25424541 4.8e-06 [+3]_90 chr15:90942372-90942472 4.8e-06 30_[+3]_60 chr5:49706649-49706749 4.8e-06 43_[+3]_47 chr5:25568300-25568400 4.8e-06 59_[+3]_31 chr5:106404415-106404515 4.8e-06 41_[+3]_49 chr2:192765638-192765738 4.8e-06 1_[-3]_89 chrX:16596844-16596944 4.8e-06 71_[+3]_19 chr4:81416971-81417071 4.8e-06 51_[+3]_39 chr3:75303769-75303869 6.7e-06 4_[-3]_86 chr5:133435765-133435865 6.7e-06 57_[-3]_33 chr10:23164840-23164940 6.7e-06 41_[-3]_49 chr11:94389966-94390066 6.7e-06 89_[-3]_1 chr17:42588676-42588776 6.7e-06 21_[+3]_69 chr6:65900602-65900702 8.6e-06 21_[+3]_69 chr3:152811324-152811424 8.6e-06 2_[+3]_88 chr9:36560613-36560713 8.6e-06 77_[-3]_13 chr3:186682688-186682788 8.6e-06 6_[-3]_84 chr4:157935939-157936039 8.6e-06 46_[+3]_44 chr6:42746996-42747096 8.6e-06 [+3]_90 chr6:62737045-62737145 1.1e-05 59_[+3]_31 chr17:56642932-56643032 1.1e-05 75_[-3]_15 chr2:238239156-238239256 1.1e-05 68_[-3]_22 chr3:31183397-31183497 1.1e-05 4_[+3]_86 chr4:159195174-159195274 1.3e-05 1_[+3]_89 chr8:51364634-51364734 1.3e-05 35_[+3]_55 chr1:197242326-197242426 1.3e-05 29_[-3]_61 chr7:115725961-115726061 1.3e-05 50_[-3]_40 chr1:210580637-210580737 1.3e-05 28_[-3]_62 chrX:54414037-54414137 1.3e-05 68_[-3]_22 chr7:150351751-150351851 1.3e-05 19_[-3]_71 chr4:29268281-29268381 1.3e-05 32_[+3]_58 chr1:63770092-63770192 1.3e-05 12_[-3]_78 chr4:135994458-135994558 1.4e-05 48_[+3]_42 chr1:183603054-183603154 1.4e-05 18_[+3]_72 chr13:100847586-10084768 1.4e-05 45_[-3]_45 chr3:79251865-79251965 1.4e-05 29_[-3]_61 chr12:107419028-10741912 1.7e-05 19_[-3]_71 chr2:120060581-120060681 1.7e-05 86_[-3]_4 chr8:71291900-71292000 1.7e-05 3_[-3]_87 chr2:166720760-166720860 1.7e-05 28_[-3]_62 chr8:74218666-74218766 1.7e-05 3_[-3]_87 chr3:143190435-143190535 1.7e-05 27_[+3]_63 chr16:19894528-19894628 1.8e-05 31_[-3]_59 chr5:127882215-127882315 1.8e-05 54_[+3]_36 chr2:48735836-48735936 1.8e-05 47_[-3]_43 chr2:171536667-171536767 2e-05 87_[-3]_3 chr4:75411772-75411872 2e-05 70_[+3]_20 chr21:18201788-18201888 2e-05 19_[+3]_71 chr17:63738522-63738622 2.1e-05 59_[+3]_31 chr13:95357390-95357490 2.1e-05 53_[-3]_37 chr3:79817637-79817737 2.1e-05 78_[+3]_12 chr4:62513975-62514075 2.1e-05 41_[-3]_49 chr20:50575432-50575532 2.4e-05 78_[+3]_12 chr20:19730131-19730231 2.4e-05 12_[-3]_78 chr9:17332033-17332133 2.4e-05 77_[+3]_13 chr14:52718419-52718519 2.4e-05 80_[-3]_10 chr12:119059937-11906003 2.7e-05 21_[+3]_69 chr2:12403735-12403835 2.7e-05 64_[+3]_26 chr7:25901633-25901733 2.9e-05 42_[+3]_48 chr1:187016426-187016526 3.1e-05 18_[+3]_72 chr9:138211541-138211641 3.1e-05 52_[-3]_38 chr4:171942509-171942609 3.3e-05 76_[-3]_14 chr3:25789597-25789697 4e-05 73_[-3]_17 chr11:69453597-69453697 4e-05 33_[+3]_57 chr9:30630247-30630347 4e-05 32_[+3]_58 chr3:167371350-167371450 4.1e-05 17_[-3]_73 chr10:76623127-76623227 4.1e-05 37_[+3]_53 chr16:19872089-19872189 4.6e-05 89_[-3]_1 chr15:89950462-89950562 4.6e-05 89_[+3]_1 chr3:95647090-95647190 4.6e-05 83_[+3]_7 chr9:37226172-37226272 4.6e-05 74_[-3]_16 chr11:106636240-10663634 4.6e-05 61_[+3]_29 chr1:85410484-85410584 4.6e-05 43_[+3]_47 chr1:17193266-17193366 4.8e-05 9_[-3]_81 chr11:103834276-10383437 4.8e-05 12_[+3]_78 chr11:115279797-11527989 5.2e-05 84_[-3]_6 chr9:3361858-3361958 5.2e-05 61_[+3]_29 chr5:134951177-134951277 6.3e-05 3_[-3]_87 chr10:91847324-91847424 6.8e-05 38_[+3]_52 chr20:771666-771766 7.2e-05 22_[-3]_68 chr21:24596062-24596162 7.2e-05 89_[+3]_1 chr18:40125026-40125126 8.3e-05 23_[-3]_67 chr1:243895519-243895619 8.9e-05 26_[+3]_64 chrX:22061207-22061307 0.0001 75_[+3]_15 chr6:25899185-25899285 0.00012 25_[-3]_65 chr1:232260198-232260298 0.00013 2_[-3]_88 chr2:63844682-63844782 0.00018 2_[+3]_88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGYWAATK MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATGYWAATK width=10 seqs=105 chr12:2888513-2888613 ( 62) TATGCAAATG 1 chr5:51627523-51627623 ( 53) TATGCAAATG 1 chr6:11026274-11026374 ( 29) TATGCAAATG 1 chr3:123603132-123603232 ( 24) TATGCAAATG 1 chr12:77266046-77266146 ( 25) TATGCAAATG 1 chr3:21683227-21683327 ( 73) TATGCAAATG 1 chr20:34996546-34996646 ( 13) TATGCAAATG 1 chr17:64773528-64773628 ( 45) TATGCAAATG 1 chr3:142585397-142585497 ( 88) TATGCAAATG 1 chr16:16064748-16064848 ( 45) TATGCAAATG 1 chr6:26123916-26124016 ( 44) TATGCTAATG 1 chr14:67957819-67957919 ( 24) TATGCTAATG 1 chr9:86295041-86295141 ( 9) TATGCTAATG 1 chr14:97880202-97880302 ( 66) TATGCTAATG 1 chr2:24248976-24249076 ( 79) TATGCTAATG 1 chr7:66643943-66644043 ( 89) TATGCTAATG 1 chr1:196577821-196577921 ( 14) TATGCTAATG 1 chr13:93877742-93877842 ( 91) TATGCTAATG 1 chr5:25424441-25424541 ( 1) TATGCAAATT 1 chr15:90942372-90942472 ( 31) TATGCAAATT 1 chr5:49706649-49706749 ( 44) TATGCAAATT 1 chr5:25568300-25568400 ( 60) TATGCAAATT 1 chr5:106404415-106404515 ( 42) TATGCAAATT 1 chr2:192765638-192765738 ( 2) TATGCAAATT 1 chrX:16596844-16596944 ( 72) TATGCAAATT 1 chr4:81416971-81417071 ( 52) TATGCAAATT 1 chr3:75303769-75303869 ( 5) TATGTAAATG 1 chr5:133435765-133435865 ( 58) TATGTAAATG 1 chr10:23164840-23164940 ( 42) TATGTAAATG 1 chr11:94389966-94390066 ( 90) TATGTAAATG 1 chr17:42588676-42588776 ( 22) TATGTAAATG 1 chr6:65900602-65900702 ( 22) TATGCTAATT 1 chr3:152811324-152811424 ( 3) TATGCTAATT 1 chr9:36560613-36560713 ( 78) TATGCTAATT 1 chr3:186682688-186682788 ( 7) TATGCTAATT 1 chr4:157935939-157936039 ( 47) TATGCTAATT 1 chr6:42746996-42747096 ( 1) TATGCTAATT 1 chr6:62737045-62737145 ( 60) TATGTTAATG 1 chr17:56642932-56643032 ( 76) TATGTTAATG 1 chr2:238239156-238239256 ( 69) TATGTTAATG 1 chr3:31183397-31183497 ( 5) TATGTTAATG 1 chr4:159195174-159195274 ( 2) TATGTAAATT 1 chr8:51364634-51364734 ( 36) TATGTAAATT 1 chr1:197242326-197242426 ( 30) TATGTAAATT 1 chr7:115725961-115726061 ( 51) TATGTAAATT 1 chr1:210580637-210580737 ( 29) TATGTAAATT 1 chrX:54414037-54414137 ( 69) TATGTAAATT 1 chr7:150351751-150351851 ( 20) TATGTAAATT 1 chr4:29268281-29268381 ( 33) TATGTAAATT 1 chr1:63770092-63770192 ( 13) TATGTAAATT 1 chr4:135994458-135994558 ( 49) AATGCAAATG 1 chr1:183603054-183603154 ( 19) AATGCAAATG 1 chr13:100847586-10084768 ( 46) AATGCAAATG 1 chr3:79251865-79251965 ( 30) AATGCAAATG 1 chr12:107419028-10741912 ( 20) TATGTTAATT 1 chr2:120060581-120060681 ( 87) TATGTTAATT 1 chr8:71291900-71292000 ( 4) TATGTTAATT 1 chr2:166720760-166720860 ( 29) TATGTTAATT 1 chr8:74218666-74218766 ( 4) TATGTTAATT 1 chr3:143190435-143190535 ( 28) TATGTTAATT 1 chr16:19894528-19894628 ( 32) CATGCAAATG 1 chr5:127882215-127882315 ( 55) CATGCAAATG 1 chr2:48735836-48735936 ( 48) CATGCAAATG 1 chr2:171536667-171536767 ( 88) AATGCTAATG 1 chr4:75411772-75411872 ( 71) AATGCTAATG 1 chr21:18201788-18201888 ( 20) AATGCTAATG 1 chr17:63738522-63738622 ( 60) AATGCAAATT 1 chr13:95357390-95357490 ( 54) AATGCAAATT 1 chr3:79817637-79817737 ( 79) AATGCAAATT 1 chr4:62513975-62514075 ( 42) AATGCAAATT 1 chr20:50575432-50575532 ( 79) CATGCTAATG 1 chr20:19730131-19730231 ( 13) CATGCTAATG 1 chr9:17332033-17332133 ( 78) AATGTAAATG 1 chr14:52718419-52718519 ( 81) AATGTAAATG 1 chr12:119059937-11906003 ( 22) TATGCAAATC 1 chr2:12403735-12403835 ( 65) CATGCAAATT 1 chr7:25901633-25901733 ( 43) CATGTAAATG 1 chr1:187016426-187016526 ( 19) AATGCTAATT 1 chr9:138211541-138211641 ( 53) AATGCTAATT 1 chr4:171942509-171942609 ( 77) AATGTTAATG 1 chr3:25789597-25789697 ( 74) TATGCTAATC 1 chr11:69453597-69453697 ( 34) CATGCTAATT 1 chr9:30630247-30630347 ( 33) TATGCAAATA 1 chr3:167371350-167371450 ( 18) CATGTTAATG 1 chr10:76623127-76623227 ( 38) CATGTTAATG 1 chr16:19872089-19872189 ( 90) TATGTAAATC 1 chr15:89950462-89950562 ( 90) TATGCAAACG 1 chr3:95647090-95647190 ( 84) TATGTAAATC 1 chr9:37226172-37226272 ( 75) TATGTAAATC 1 chr11:106636240-10663634 ( 62) CATGTAAATT 1 chr1:85410484-85410584 ( 44) TATGTAAATC 1 chr1:17193266-17193366 ( 10) TATGCATATG 1 chr11:103834276-10383437 ( 13) TATGCATATG 1 chr11:115279797-11527989 ( 85) TATGCTAATA 1 chr9:3361858-3361958 ( 62) AATGTTAATT 1 chr5:134951177-134951277 ( 4) TATGCAAACT 1 chr10:91847324-91847424 ( 39) TATGTATATG 1 chr20:771666-771766 ( 23) TATGTTAATA 1 chr21:24596062-24596162 ( 90) TATGTTAATA 1 chr18:40125026-40125126 ( 24) TATGTAAACT 1 chr1:243895519-243895619 ( 27) TATGTATATT 1 chrX:22061207-22061307 ( 76) TATGGTAATG 1 chr6:25899185-25899285 ( 26) TACGTAAATG 1 chr1:232260198-232260298 ( 3) AATGTAAACG 1 chr2:63844682-63844782 ( 3) TATGCATATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGYWAATK MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 54145 bayes= 10.6447 E= 3.8e-055 -72 -105 -1336 136 182 -1336 -1336 -1336 -1336 -451 -1336 181 -1336 -1336 220 -1336 -1336 142 -451 54 111 -1336 -1336 47 175 -1336 -1336 -257 182 -1336 -1336 -1336 -1336 -251 -1336 177 -257 -193 119 50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGYWAATK MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 105 E= 3.8e-055 0.171429 0.104762 0.000000 0.723810 1.000000 0.000000 0.000000 0.000000 0.000000 0.009524 0.000000 0.990476 0.000000 0.000000 1.000000 0.000000 0.000000 0.580952 0.009524 0.409524 0.609524 0.000000 0.000000 0.390476 0.952381 0.000000 0.000000 0.047619 1.000000 0.000000 0.000000 0.000000 0.000000 0.038095 0.000000 0.961905 0.047619 0.057143 0.495238 0.400000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGYWAATK MEME-3 regular expression -------------------------------------------------------------------------------- TATG[CT][AT]AAT[GT] -------------------------------------------------------------------------------- Time 865.79 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:92690804-92690904 8.95e-02 100 chr21:27683265-27683365 4.55e-01 100 chr7:100937414-100937514 7.67e-01 100 chr17:44297238-44297338 4.37e-01 100 chr3:143190435-143190535 5.90e-03 27_[+3(1.69e-05)]_63 chr10:110729674-11072977 9.79e-01 100 chr13:20255564-20255664 2.67e-01 100 chrX:5160440-5160540 8.60e-01 100 chr5:72334634-72334734 9.54e-01 100 chr1:85410484-85410584 1.12e-01 43_[+3(4.64e-05)]_47 chr17:78414781-78414881 5.23e-11 2_[+2(5.82e-07)]_28_[+1(8.20e-12)]_\ 20 chr3:164658711-164658811 7.62e-01 100 chr12:120666334-12066643 1.31e-05 49_[+2(2.59e-09)]_22 chr11:27656204-27656304 7.12e-01 100 chr9:23850530-23850630 6.79e-01 100 chr1:243895519-243895619 1.07e-02 26_[+3(8.88e-05)]_64 chr3:185451670-185451770 1.98e-03 31_[-2(1.30e-05)]_40 chr13:93877742-93877842 5.88e-03 90_[-3(2.94e-06)] chr6:41934024-41934124 3.62e-01 100 chr12:26831869-26831969 2.41e-01 100 chr3:9593745-9593845 9.91e-05 38_[-2(5.01e-08)]_33 chr13:84287989-84288089 9.60e-01 100 chr10:21571970-21572070 4.21e-01 100 chr3:167407667-167407767 3.90e-01 100 chr9:122133014-122133114 3.11e-07 33_[-1(5.15e-11)]_46 chr17:65970882-65970982 9.30e-01 100 chr8:120437992-120438092 6.39e-01 100 chr3:28119045-28119145 9.35e-01 100 chr19:4172753-4172853 3.78e-11 6_[-1(3.30e-11)]_[+2(3.11e-07)]_44 chr8:1750571-1750671 5.84e-01 100 chr5:107269037-107269137 4.90e-01 100 chr14:52718419-52718519 3.82e-02 80_[-3(2.45e-05)]_10 chr9:79085614-79085714 2.43e-01 100 chr10:55016184-55016284 3.39e-01 100 chr12:107711571-10771167 8.26e-03 52_[-2(2.74e-05)]_19 chr8:103395057-103395157 1.23e-01 100 chr12:1163481-1163581 3.20e-01 100 chr5:87958227-87958327 9.09e-01 100 chr16:68481834-68481934 6.79e-06 43_[+2(1.21e-09)]_28 chr4:162916849-162916949 8.87e-01 100 chr20:48099056-48099156 3.81e-04 29_[-2(2.45e-06)]_[-1(9.97e-05)]_21 chr22:37040153-37040253 2.79e-06 58_[+1(4.13e-10)]_21 chr17:32059122-32059222 1.28e-07 17_[+1(1.50e-11)]_62 chr21:18201788-18201888 6.31e-02 19_[+3(1.95e-05)]_71 chr4:23424419-23424519 7.64e-01 100 chr5:122257177-122257277 8.25e-01 100 chr6:127653498-127653598 1.77e-01 100 chr6:57638956-57639056 5.64e-01 100 chr17:42588676-42588776 9.23e-03 21_[+3(6.74e-06)]_69 chrX:22061207-22061307 1.80e-01 100 chr4:81416971-81417071 2.20e-02 51_[+3(4.84e-06)]_39 chr12:73879518-73879618 4.33e-02 25_[+1(4.91e-05)]_54 chr7:79801257-79801357 1.90e-01 100 chr5:118414663-118414763 2.99e-01 100 chr19:35738576-35738676 8.70e-05 57_[-2(3.46e-08)]_14 chr3:167172708-167172808 8.41e-01 100 chr2:190079191-190079291 8.23e-01 100 chr16:16064748-16064848 3.95e-05 44_[+3(1.47e-06)]_14_[+2(1.52e-05)]_\ 3 chr9:134674468-134674568 4.79e-01 100 chr15:82349318-82349418 9.96e-01 100 chr3:11006205-11006305 2.03e-01 100 chr4:171942509-171942609 8.59e-02 76_[-3(3.27e-05)]_14 chr3:178402578-178402678 3.38e-01 100 chr2:48735836-48735936 4.39e-02 47_[-3(1.81e-05)]_43 chr14:100952715-10095281 6.20e-04 19_[-2(1.61e-07)]_52 chr1:195305449-195305549 7.85e-01 100 chr1:63770092-63770192 5.70e-02 12_[-3(1.30e-05)]_78 chr5:127882215-127882315 6.98e-02 54_[+3(1.81e-05)]_36 chr6:10588060-10588160 7.25e-01 100 chr4:62513975-62514075 6.51e-02 41_[-3(2.14e-05)]_49 chr3:79251865-79251965 5.12e-02 29_[-3(1.45e-05)]_61 chr19:36466274-36466374 3.05e-01 100 chr2:55360724-55360824 8.02e-01 100 chr3:147125221-147125321 2.92e-04 48_[-2(2.02e-07)]_23 chr4:29268281-29268381 5.98e-02 32_[+3(1.30e-05)]_22_[-3(1.30e-05)]_\ 26 chr9:134651767-134651867 3.95e-07 35_[-1(1.92e-10)]_44 chr13:94161974-94162074 9.96e-01 100 chr3:57029621-57029721 3.01e-01 100 chr11:94389966-94390066 3.22e-02 89_[-3(6.74e-06)]_1 chr3:183977767-183977867 2.74e-04 63_[+2(3.05e-08)]_8 chr16:19894528-19894628 1.11e-02 9_[-3(2.14e-05)]_12_[-3(1.81e-05)]_\ 59 chr9:3361858-3361958 1.31e-01 61_[+3(5.22e-05)]_29 chr15:26375059-26375159 8.72e-01 100 chr6:42746996-42747096 3.20e-02 [+3(8.64e-06)]_90 chr18:44082107-44082207 9.11e-02 29_[-1(6.94e-05)]_50 chr3:31183397-31183497 1.92e-02 4_[+3(1.05e-05)]_86 chr9:17082279-17082379 6.22e-02 100 chr4:171943787-171943887 8.12e-01 100 chr8:50823846-50823946 4.87e-03 22_[-2(4.94e-06)]_49 chr19:36360512-36360612 3.48e-03 51_[+2(5.25e-07)]_20 chr15:71655785-71655885 2.86e-01 100 chr2:238239156-238239256 3.88e-02 68_[-3(1.05e-05)]_22 chr8:74218666-74218766 6.45e-02 3_[-3(1.69e-05)]_87 chr18:31151864-31151964 9.30e-01 100 chr10:103769465-10376956 7.78e-01 100 chr17:58820639-58820739 1.40e-01 100 chr9:128640615-128640715 5.73e-01 100 chr3:63053211-63053311 8.75e-01 100 chrX:4299587-4299687 6.42e-01 100 chr20:10197994-10198094 1.18e-02 71_[-2(8.12e-06)] chr14:41754110-41754210 1.74e-01 100 chr3:142585397-142585497 6.95e-03 87_[-3(1.47e-06)]_3 chr10:19110972-19111072 3.77e-01 100 chr4:24660557-24660657 6.60e-01 100 chr3:185911806-185911906 1.18e-01 100 chrX:16596844-16596944 2.14e-02 71_[+3(4.84e-06)]_19 chr19:15126503-15126603 1.21e-03 70_[+2(3.11e-07)]_1 chrY:10020432-10020532 7.86e-01 100 chr11:106636240-10663634 1.24e-01 61_[+3(4.64e-05)]_29 chr6:88146033-88146133 3.13e-08 51_[-1(6.41e-11)]_28 chr4:42296110-42296210 9.55e-01 100 chr12:108861804-10886190 3.40e-01 100 chr10:76623127-76623227 1.11e-01 37_[+3(4.14e-05)]_53 chr1:48996378-48996478 1.37e-01 100 chr10:11975475-11975575 5.18e-01 100 chrY:16343484-16343584 7.08e-07 42_[-1(1.75e-10)]_37 chr7:30711356-30711456 9.68e-05 50_[-1(2.82e-08)]_29 chr4:157935939-157936039 1.05e-02 46_[+3(8.64e-06)]_44 chr1:196577821-196577921 1.08e-03 13_[-3(2.94e-06)]_77 chr7:150351751-150351851 3.03e-02 19_[-3(1.30e-05)]_71 chr17:33030519-33030619 6.06e-01 100 chr5:146716287-146716387 4.62e-01 100 chr19:18314754-18314854 2.11e-03 13_[+2(4.27e-07)]_58 chr1:11113557-11113657 2.54e-07 55_[-1(2.66e-09)]_24 chr13:27102565-27102665 8.55e-01 100 chr16:24266862-24266962 3.03e-03 11_[+2(1.55e-06)]_18_[-2(4.15e-05)]_\ 13 chr8:65281290-65281390 2.04e-01 100 chr5:17223632-17223732 7.64e-01 100 chr8:122598509-122598609 5.54e-02 100 chr2:14372009-14372109 8.95e-01 100 chr10:23164840-23164940 8.76e-03 41_[-3(6.74e-06)]_8_[+3(8.64e-06)]_\ 31 chr2:12403735-12403835 4.21e-03 18_[+1(9.70e-05)]_25_[+3(2.74e-05)]_\ 26 chr3:38846793-38846893 8.88e-01 100 chr3:149311259-149311359 5.62e-01 100 chrX:199827-199927 5.25e-04 45_[+2(1.44e-07)]_26 chr5:141217932-141218032 2.97e-01 100 chr6:121940097-121940197 5.51e-01 100 chr11:23994578-23994678 1.86e-04 52_[+1(1.29e-07)]_27 chr16:15256867-15256967 8.43e-01 100 chr2:55246759-55246859 3.36e-01 100 chr22:41123192-41123292 2.62e-01 100 chr12:44075488-44075588 4.99e-01 100 chr2:62277498-62277598 4.44e-01 100 chr7:66643943-66644043 1.38e-03 88_[+3(2.94e-06)]_2 chr20:7034934-7035034 6.47e-01 100 chr5:133435765-133435865 1.15e-02 57_[-3(6.74e-06)]_11_[-3(2.74e-05)]_\ 12 chr15:74583444-74583544 3.29e-02 48_[+2(2.37e-05)]_23 chr21:34143404-34143504 3.51e-03 21_[+2(2.24e-06)]_50 chr2:175788711-175788811 8.30e-01 100 chr17:64773528-64773628 4.05e-04 44_[-3(1.47e-06)]_46 chr5:39424733-39424833 3.06e-04 21_[+2(7.19e-08)]_12_[+2(6.35e-06)]_\ 9 chr17:45041596-45041696 2.77e-09 38_[-1(3.30e-11)]_9_[+2(1.03e-05)]_\ 3 chr5:111942677-111942777 8.99e-01 100 chr4:156240446-156240546 7.93e-01 100 chr18:51093077-51093177 7.31e-01 100 chr1:224794917-224795017 6.73e-01 100 chr15:88406338-88406438 1.32e-06 27_[+1(6.54e-10)]_52 chr1:94018311-94018411 8.00e-01 100 chr9:138211541-138211641 6.19e-02 52_[-3(3.08e-05)]_38 chr10:53027739-53027839 7.84e-01 100 chr17:56642932-56643032 1.14e-02 75_[-3(1.05e-05)]_15 chr4:4048581-4048681 4.85e-01 100 chr13:100847586-10084768 2.39e-02 45_[-3(1.45e-05)]_45 chr11:104684255-10468435 5.35e-01 100 chr4:144277586-144277686 6.94e-01 100 chr3:138328208-138328308 7.60e-01 100 chr4:126656925-126657025 3.56e-01 100 chr17:63057483-63057583 9.32e-01 100 chr20:50003534-50003634 2.30e-02 100 chr6:4887358-4887458 9.70e-01 100 chr19:45873395-45873495 2.05e-03 26_[-2(7.12e-07)]_45 chr6:62747261-62747361 8.52e-01 100 chr2:210169896-210169996 9.45e-01 100 chr5:50522103-50522203 6.54e-01 100 chr17:45862985-45863085 1.47e-08 46_[+1(1.42e-10)]_33 chr6:12751467-12751567 9.94e-01 100 chr20:17582824-17582924 4.59e-01 100 chr10:70322523-70322623 7.12e-01 100 chr19:57150499-57150599 1.57e-08 1_[-2(8.12e-06)]_14_[+1(3.10e-10)]_\ 35 chr12:66154949-66155049 8.52e-02 100 chr3:79817637-79817737 8.31e-02 78_[+3(2.14e-05)]_12 chrX:54414037-54414137 4.64e-02 68_[-3(1.30e-05)]_22 chr12:18450627-18450727 5.23e-01 100 chr17:40332037-40332137 6.88e-03 39_[-2(6.90e-06)]_32 chr11:103495892-10349599 8.79e-01 100 chr7:29229196-29229296 5.45e-01 100 chr2:133821236-133821336 6.53e-06 58_[+1(4.13e-10)]_21 chr10:123338744-12333884 1.62e-01 100 chr19:46721352-46721452 2.17e-01 100 chr3:161391402-161391502 6.01e-02 100 chr3:126881550-126881650 1.37e-02 100 chr16:17232621-17232721 8.23e-01 100 chr3:29386691-29386791 9.06e-01 100 chr10:23707154-23707254 1.06e-01 100 chr10:98841285-98841385 5.74e-01 100 chr16:73070715-73070815 5.62e-01 100 chr6:25899185-25899285 2.65e-01 100 chr20:10199206-10199306 2.23e-02 49_[-2(2.37e-05)]_22 chr17:26368104-26368204 4.84e-01 100 chr19:36370618-36370718 3.27e-09 33_[+1(5.25e-12)]_46 chr6:26272744-26272844 3.73e-01 100 chr11:20692998-20693098 6.10e-02 100 chr1:147058106-147058206 4.24e-01 100 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chr3:152811324-152811424 8.38e-03 2_[+3(8.64e-06)]_88 chr17:1953198-1953298 7.44e-13 9_[+2(2.02e-07)]_4_[-1(1.58e-10)]_3_\ [+2(3.92e-08)]_5 chr4:109782421-109782521 2.74e-01 100 chr8:53164655-53164755 8.74e-01 100 chr5:155871212-155871312 6.24e-01 100 chr16:19872089-19872189 4.91e-02 89_[-3(4.64e-05)]_1 chr20:859098-859198 1.78e-01 100 chr8:21053851-21053951 3.72e-01 100 chr7:107644173-107644273 4.00e-01 100 chr4:99255540-99255640 9.51e-01 100 chr17:14429118-14429218 1.51e-01 100 chr5:102982647-102982747 1.54e-01 47_[-3(8.88e-05)]_43 chr7:83095578-83095678 9.82e-01 100 chr1:183385576-183385676 9.60e-01 100 chr9:109697120-109697220 1.94e-01 100 chr8:71291900-71292000 2.89e-02 3_[-3(1.69e-05)]_87 chr2:116900221-116900321 5.16e-01 100 chr5:118218342-118218442 8.70e-01 100 chr20:10332770-10332870 8.76e-01 100 chr1:210899830-210899930 3.35e-01 100 chr15:42911831-42911931 6.45e-01 100 chr11:103834276-10383437 5.54e-02 12_[+3(4.79e-05)]_78 chr7:108166301-108166401 2.88e-05 3_[-2(1.07e-08)]_68 chr6:40965081-40965181 9.71e-02 100 chr10:74553534-74553634 6.68e-01 100 chr4:135994458-135994558 5.35e-02 48_[+3(1.45e-05)]_42 chr22:39941768-39941868 5.17e-04 12_[+2(5.37e-06)]_59 chr21:21388820-21388920 5.37e-01 100 chr7:13873253-13873353 1.99e-01 100 chr7:25901633-25901733 8.75e-07 42_[+3(2.89e-05)]_8_[-2(1.82e-08)]_\ 11 chr12:76337797-76337897 9.44e-01 100 chr6:48534646-48534746 7.15e-01 100 chr6:4889785-4889885 1.48e-02 14_[+2(3.15e-05)]_8_[+2(4.15e-05)]_\ 20 chr11:80695386-80695486 9.08e-01 100 chr16:7232194-7232294 3.06e-01 100 chr12:48536616-48536716 3.75e-03 5_[-1(3.55e-05)]_74 chr3:192162455-192162555 8.44e-01 100 chr6:129659743-129659843 3.10e-01 100 chr3:189731769-189731869 2.34e-01 100 chr11:38347981-38348081 2.37e-01 100 chr6:134245097-134245197 8.32e-01 100 chr1:121298184-121298284 6.08e-01 100 chr3:20522229-20522329 2.46e-01 100 chr6:65900602-65900702 9.35e-03 21_[+3(8.64e-06)]_6_[-3(1.45e-05)]_\ 53 chr15:89542021-89542121 6.48e-03 34_[+1(6.74e-05)]_9_[+2(8.47e-05)]_\ 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35_[+3(1.30e-05)]_55 chr6:26123916-26124016 1.66e-02 43_[+3(2.94e-06)]_47 chr9:73854359-73854459 9.20e-01 100 chr12:113658757-11365885 4.67e-02 54_[-2(2.37e-05)]_17 chrX:7492300-7492400 1.47e-06 48_[-1(1.75e-10)]_31 chr19:42644174-42644274 1.84e-03 36_[-2(8.80e-06)]_35 chr4:162851157-162851257 6.79e-01 100 chr9:132098319-132098419 1.67e-02 100 chr6:25652128-25652228 2.94e-08 46_[-1(5.46e-10)]_33 chr15:53149905-53150005 4.52e-01 100 chr13:68315319-68315419 1.04e-01 100 chrX:127887542-127887642 4.42e-01 100 chr1:17193266-17193366 1.03e-01 9_[-3(4.79e-05)]_81 chr2:120060581-120060681 3.74e-02 86_[-3(1.69e-05)]_4 chr4:114900545-114900645 1.34e-04 23_[-2(1.40e-08)]_48 chr10:32327377-32327477 7.96e-01 100 chr2:63270989-63271089 5.20e-01 100 chr16:17243654-17243754 6.32e-02 26_[+1(5.36e-05)]_53 chr4:159195174-159195274 2.01e-02 1_[+3(1.30e-05)]_89 chr2:50625268-50625368 8.12e-01 100 chr20:639344-639444 6.80e-01 100 chr2:129931471-129931571 9.97e-01 100 chr18:35104800-35104900 5.45e-01 100 chr11:22355066-22355166 6.69e-01 100 chr1:64708798-64708898 3.41e-01 100 chr14:67736285-67736385 6.76e-01 100 chr7:114737352-114737452 2.11e-01 100 chr4:89730251-89730351 6.66e-01 100 chr7:122077830-122077930 1.03e-01 100 chr1:93590012-93590112 4.92e-01 100 chr6:64674194-64674294 7.32e-01 100 chr6:50526111-50526211 8.40e-01 100 chr1:45917753-45917853 6.24e-01 100 chr12:107419028-10741912 5.32e-02 19_[-3(1.69e-05)]_71 chr7:54748066-54748166 7.03e-01 100 chr2:64076612-64076712 8.66e-01 100 chr7:70321827-70321927 7.44e-01 100 chr12:119059937-11906003 1.20e-02 21_[+3(2.74e-05)]_69 chr1:153424815-153424915 5.18e-07 44_[-1(1.75e-10)]_35 chr19:15125115-15125215 8.43e-05 53_[+2(1.07e-08)]_18 chr19:3876815-3876915 2.84e-06 54_[-1(1.10e-09)]_25 chr5:25424441-25424541 2.07e-02 [+3(4.84e-06)]_90 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: surya.stanford.edu ********************************************************************************