******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= seqnotcut_memechip_out/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:8470651-8470751 1.0000 100 chr20:42486663-42486763 1.0000 100 chr6:81684358-81684458 1.0000 100 chr16:63917056-63917156 1.0000 100 chr2:714363-714463 1.0000 100 chr10:103891961-10389206 1.0000 100 chr12:66283484-66283584 1.0000 100 chrX:15927917-15928017 1.0000 100 chr5:38686713-38686813 1.0000 100 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1.0000 100 chr5:60725060-60725160 1.0000 100 chr1:95391277-95391377 1.0000 100 chr1:158742548-158742648 1.0000 100 chr10:50298265-50298365 1.0000 100 chr13:30424592-30424692 1.0000 100 chr2:144717560-144717660 1.0000 100 chr7:136169055-136169155 1.0000 100 chr1:218667971-218668071 1.0000 100 chr1:231502288-231502388 1.0000 100 chr1:7025381-7025481 1.0000 100 chr5:77286239-77286339 1.0000 100 chr18:45707748-45707848 1.0000 100 chr17:47785671-47785771 1.0000 100 chr11:12621123-12621223 1.0000 100 chr9:102161880-102161980 1.0000 100 chr12:57489903-57490003 1.0000 100 chr8:4463422-4463522 1.0000 100 chr3:183146285-183146385 1.0000 100 chr16:71000173-71000273 1.0000 100 chr11:84865767-84865867 1.0000 100 chr2:173419240-173419340 1.0000 100 chr9:35203614-35203714 1.0000 100 chr20:36196507-36196607 1.0000 100 chr12:10051870-10051970 1.0000 100 chr2:22099563-22099663 1.0000 100 chr7:54600970-54601070 1.0000 100 chr4:103133030-103133130 1.0000 100 chr11:60609440-60609540 1.0000 100 chr15:40085262-40085362 1.0000 100 chr7:30245039-30245139 1.0000 100 chr6:138201146-138201246 1.0000 100 chr3:181578163-181578263 1.0000 100 chr1:197069284-197069384 1.0000 100 chr3:185825402-185825502 1.0000 100 chr7:111238221-111238321 1.0000 100 chr7:33393942-33394042 1.0000 100 chr8:13863631-13863731 1.0000 100 chr7:82073582-82073682 1.0000 100 chr15:37675566-37675666 1.0000 100 chr3:27114979-27115079 1.0000 100 chr14:30630050-30630150 1.0000 100 chr18:7923242-7923342 1.0000 100 chr10:99868627-99868727 1.0000 100 chr14:22642412-22642512 1.0000 100 chr6:135354807-135354907 1.0000 100 chr5:38660428-38660528 1.0000 100 chr2:90117153-90117253 1.0000 100 chr2:233544168-233544268 1.0000 100 chr17:49027593-49027693 1.0000 100 chr15:38833039-38833139 1.0000 100 chr6:24321781-24321881 1.0000 100 chr20:34961212-34961312 1.0000 100 chr6:46431729-46431829 1.0000 100 chr13:95359560-95359660 1.0000 100 chr5:54701916-54702016 1.0000 100 chr10:13297310-13297410 1.0000 100 chr15:49524610-49524710 1.0000 100 chr9:102582495-102582595 1.0000 100 chr1:164628902-164629002 1.0000 100 chr10:121510247-12151034 1.0000 100 chr2:106460498-106460598 1.0000 100 chr5:120698814-120698914 1.0000 100 chr20:709262-709362 1.0000 100 chr13:30911130-30911230 1.0000 100 chr5:123337385-123337485 1.0000 100 chr11:14354708-14354808 1.0000 100 chr2:10849891-10849991 1.0000 100 chr5:75407706-75407806 1.0000 100 chr11:113258744-11325884 1.0000 100 chr11:133727154-13372725 1.0000 100 chr14:66797068-66797168 1.0000 100 chr18:62090214-62090314 1.0000 100 chr18:22133642-22133742 1.0000 100 chr11:11196855-11196955 1.0000 100 chr2:205166653-205166753 1.0000 100 chr1:22032956-22033056 1.0000 100 chr4:95849546-95849646 1.0000 100 chr1:93685183-93685283 1.0000 100 chr7:154730472-154730572 1.0000 100 chr5:44220548-44220648 1.0000 100 chr2:142889163-142889263 1.0000 100 chr13:78167320-78167420 1.0000 100 chr5:27472443-27472543 1.0000 100 chr2:140023869-140023969 1.0000 100 chr2:181615714-181615814 1.0000 100 chr6:10415479-10415579 1.0000 100 chr5:120069829-120069929 1.0000 100 chr12:80045645-80045745 1.0000 100 chr11:12884658-12884758 1.0000 100 chr21:45552943-45553043 1.0000 100 chr17:8129501-8129601 1.0000 100 chr4:779187-779287 1.0000 100 chr7:38596452-38596552 1.0000 100 chr5:150997417-150997517 1.0000 100 chr9:108175854-108175954 1.0000 100 chr12:67731407-67731507 1.0000 100 chrX:39638349-39638449 1.0000 100 chr1:29503275-29503375 1.0000 100 chr22:35109450-35109550 1.0000 100 chr8:26008210-26008310 1.0000 100 chr5:143988991-143989091 1.0000 100 chr10:24078293-24078393 1.0000 100 chr20:22215172-22215272 1.0000 100 chr9:2079513-2079613 1.0000 100 chr14:23282252-23282352 1.0000 100 chr14:58938651-58938751 1.0000 100 chr2:176953268-176953368 1.0000 100 chr2:119913347-119913447 1.0000 100 chr4:90871112-90871212 1.0000 100 chr17:64196838-64196938 1.0000 100 chr1:10003407-10003507 1.0000 100 chr2:22917838-22917938 1.0000 100 chr17:37551645-37551745 1.0000 100 chr14:24867563-24867663 1.0000 100 chr14:64527594-64527694 1.0000 100 chr12:106323995-10632409 1.0000 100 chr10:114895379-11489547 1.0000 100 chr11:114188591-11418869 1.0000 100 chr1:46509517-46509617 1.0000 100 chr6:125505109-125505209 1.0000 100 chr3:121362407-121362507 1.0000 100 chr13:22274414-22274514 1.0000 100 chr6:13535622-13535722 1.0000 100 chr12:46121273-46121373 1.0000 100 chr5:5182758-5182858 1.0000 100 chr5:33833370-33833470 1.0000 100 chr2:192770130-192770230 1.0000 100 chr20:33733033-33733133 1.0000 100 chr10:106784895-10678499 1.0000 100 chr17:49550992-49551092 1.0000 100 chr6:69783446-69783546 1.0000 100 chr1:88171021-88171121 1.0000 100 chr12:63023212-63023312 1.0000 100 chr1:222030547-222030647 1.0000 100 chr12:45249114-45249214 1.0000 100 chr3:7793791-7793891 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme seqnotcut_memechip_out/seqs-sampled -oc seqnotcut_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile seqnotcut_memechip_out/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.275 C 0.225 G 0.225 T 0.275 Background letter frequencies (from seqnotcut_memechip_out/background): A 0.277 C 0.223 G 0.223 T 0.277 ******************************************************************************** ******************************************************************************** MOTIF TTTGCATRWSAAWRR MEME-1 width = 15 sites = 88 llr = 883 E-value = 9.1e-038 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGCATRWSAAWRR MEME-1 Description -------------------------------------------------------------------------------- Simplified A :1321a:5619a533 pos.-specific C 12::9::::51:::1 probability G :1:7:::3:2:::55 matrix T 967:::a2421:421 bits 2.2 1.9 * 1.7 *** * 1.5 *** * Relative 1.3 *** * Entropy 1.1 * **** ** (14.5 bits) 0.9 * ***** * ** 0.6 * ***** * *** 0.4 ******* * ***** 0.2 *************** 0.0 --------------- Multilevel TTTGCATAACAAAGG consensus CAA GTG TAA sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCATRWSAAWRR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr5:75407706-75407806 + 43 5.58e-09 acaatccaca tttgcatatcaaagg ctctgagaag chr4:10456843-10456943 + 56 1.42e-08 GTTAGCTGAG TTTGCATAACAAAGA AAATGCAGTA chr12:102300944-10230104 + 18 2.31e-08 agaagctgca tttgcataacaaaag cagtggtttt chr2:22917838-22917938 + 63 3.53e-08 gattggttgg tttgcatatgaaagg cacaattcct chr1:46509517-46509617 - 53 1.13e-07 AAAACACTTG TTTGCATAACAATTG CTCTCAGACT chr7:75230929-75231029 + 53 1.13e-07 tgaggctgct tctgcattacaaagg cagagttgaa chr2:90117153-90117253 + 35 1.67e-07 atggccagaa tttgcatatcaaagc ttgccagcct chr6:24321781-24321881 - 79 2.37e-07 TTTGCTT TTTGCATTTCAAAGA GATGACTGCT chr5:138901985-138902085 + 83 4.15e-07 tggaggtaca tttgcataAGAATAA GAA chr11:1595493-1595593 - 49 4.15e-07 TCAGTGCTTA TTTGCATGAAAATGG CTACGGGGAT chr18:47291729-47291829 - 72 4.15e-07 TATGTACTTT TTTGCATAACAATTA CACCTCAATA chr8:87289278-87289378 - 52 4.72e-07 CAAAAGCTAC TTAGCATGTGAATGG CAGTTGAGAA chr5:38660428-38660528 + 32 5.40e-07 agagaacctg tctgcataataaaag atcagggtgg chr13:30911130-30911230 - 56 6.46e-07 GAGTGGCACT TTAGCATGTTAAAGG CTTTGAGAAG chr2:98386983-98387083 - 23 7.49e-07 CATCAGCAAA TTTGCATTTGAAAAG TTAGTCAAAG chr15:42676918-42677018 + 53 8.45e-07 CATACCCCAC TCAGCATGACAAAAG CCCTGCTTTT chr8:82512568-82512668 + 30 8.45e-07 tgtaagcaga tcagcatttcaaagg agcccaattg chr1:91193563-91193663 - 26 9.83e-07 TTCAATTTGC TGTGCATGAGAATGG ATGGTTCCTT chr4:5914591-5914691 + 45 1.32e-06 gattgtctgg cttgcatatgaaagg cgtgctcaca chr3:7793791-7793891 - 28 1.68e-06 AGGAGCCTGA TGTACATAACAATGG ATGTTTCCTG chr4:174963935-174964035 - 57 1.68e-06 CTAGATGCAA CCTGCATGACAATGG AAACAGGTCA chr1:101023621-101023721 - 3 1.92e-06 TGAATGTTAC TTTACATGACAAAAA GG chr6:14970392-14970492 + 60 1.92e-06 gccatagctt cttgcataacaaagc atcatttctt chr12:114299658-11429975 + 9 1.92e-06 GGCAGACA TCAGCATGACAAATG AAACGCCACC chr3:114075037-114075137 + 56 2.16e-06 GGGATAGGAC TTAGCATGAGAATAA AAAGCTGCCT chr14:66797068-66797168 - 18 2.44e-06 GAAACGGGCA TCTGCATAACAAGGA AGATAGTGAT chr15:49524610-49524710 - 22 2.44e-06 GCTACAGAAA TTTGCATAAGTAAAG AATAGTCAAA chr11:9058809-9058909 - 44 2.44e-06 GTCTGTCCCT TTTGCATCAGAAAAG CTTTCTCGTA chrX:24148600-24148700 - 40 2.78e-06 CCAGTTTCCA TCAGCATGATAATGA AGTTCCCTTT chr14:23282252-23282352 + 27 3.11e-06 GGTGCCCAGT TCCGCATAACAAAGG GCCCCAAAGA chrX:119274223-119274323 - 16 3.11e-06 GCTGATGGCA TTTACATATGAAAGC TAGCTTGCAT chr11:84865767-84865867 + 4 3.48e-06 ATT TTAGCATATGAATGT ACTATCTAAC chr20:34961212-34961312 + 11 4.35e-06 AGGCAGCTTG TTAGCATCTCAAAGA ACACTCTCGC chr18:57534541-57534641 + 57 4.35e-06 TAGATGAATA TTAACATGAGAATGA GACATGCTTT chr7:80785301-80785401 - 21 4.82e-06 ATGAGTAACG TTTGCATGAAAATGT AACTAATAGT chr4:26649506-26649606 + 32 4.82e-06 tgcttgcctt tttccattacaaagg aagctccaca chr17:13913367-13913467 + 58 4.82e-06 TATGTGGCAC TTTGAATGACAAAAG AATAACTAGG chr13:24173763-24173863 - 16 4.82e-06 GGAGGCTTCA TCTGCATGATAAAAC CTTGGTCTCT chr6:13535622-13535722 - 34 5.42e-06 AGCCAACTGG CTTGCATATAAATGG CCTGGAATGT chr3:38578156-38578256 - 76 5.42e-06 TCACCCTACA TTTACATAACTAAGA AAGCTATTTA chr5:67318609-67318709 + 24 6.06e-06 AAGGCTGGAA TATACATAACAAAAG TTTAGAACCA chr7:152683539-152683639 + 73 6.69e-06 GAGCCCTGTA TTAGCATTTTAATTG CTGGCTGATT chr5:15554676-15554776 + 84 6.69e-06 agctgatcca tctgcatattcaagg tg chr6:21935916-21936016 - 79 6.69e-06 ATTGTAA TTAGCATACCAAAGG CTCAGAGAAT chr13:24430525-24430625 - 49 7.38e-06 CACCCCTTAA TTTGCATTTAAATAA CAGTGGGTAT chr11:100146230-10014633 + 75 8.23e-06 GTATTCAGAT TGTGCATTTTAAAAG AATTTCTATT chr1:165826257-165826357 + 72 9.07e-06 ttgttacata ttaacatgacaaaac taagactcag chr6:27442462-27442562 + 18 9.07e-06 agatggaaaa taagcatatgaaaag atgctccaca chr2:25312882-25312982 + 72 9.07e-06 CCACGGCACA TTTGCATTTCAAGTG GTGTGCTTGT chr13:22274414-22274514 + 41 1.10e-05 GAGTTAGGAT TCTgcattagaattc tcccagggac chr11:92245081-92245181 + 20 1.10e-05 ATTGCCTTCT TTTTCATGATAATGG ACACACGTGG chr14:58938651-58938751 - 13 1.22e-05 AGCCATTAGG TCAACATTTCAATAG CTTTAAAAAA chr2:166535674-166535774 - 4 1.34e-05 GGCGGTGCCA TCAGAATAACAAAGA ACT chr5:31637533-31637633 + 60 1.47e-05 gatacatTTA TTTGCATATTCATTG ATTCAGCAAA chr7:89617022-89617122 + 38 1.61e-05 ttccttgaca attacatatcaaaga gatggctgta chr16:72319278-72319378 + 82 1.77e-05 CAATGAGCAA TTAGCATGACAAGAC TAAA chr4:779187-779287 - 59 1.93e-05 TCATGTTTAA TTTGCATCACAATTT GTTGAATCTC chr9:35203614-35203714 + 53 1.93e-05 cctgcattca tatgcatgagcaagg aaatgacctg chr7:8246652-8246752 + 61 1.93e-05 GGAATCAGCA TCTAAATGACAATGG TTGTCTCAGA chr22:45203225-45203325 - 46 2.11e-05 AACATTTTGC TTTTCATTACAAAGC CAGAGTCCTG chr1:95983980-95984080 + 32 2.11e-05 AATTTGCACC ACTGCATGATAAAAG CAGCTTGCTT chr4:90871112-90871212 + 25 2.53e-05 TGTTTCTGCA TTTACATAATTATGC ATTATGTTTA chr4:104978519-104978619 + 35 2.53e-05 CTTCTCTCCC TGAGCATGATAATGT ATCACCTCTA chr5:10103194-10103294 + 12 2.53e-05 TATAGTAGTG TCTGCATTTAAATAC CTGCACAATG chr3:131042074-131042174 - 65 2.75e-05 CTGAAATGAA TTTGCAAAACAATAA TTGAGGCTGA chr9:120578611-120578711 + 10 2.75e-05 accacatgg tatgcattataaata tccctatatt chr6:10415479-10415579 + 14 3.26e-05 AATCGCCTCA TTAGCATATCAACAA TAGTCCAATT chr5:58520328-58520428 - 60 3.26e-05 GATTAAGGCT TCAACATATGAATTA TAGGGGAAAC chr3:12826676-12826776 + 49 3.26e-05 aacacatgca tttgcataacacata ggctgtgggg chr17:37551645-37551745 - 7 3.53e-05 ATGTTTCTTT ATTGCATAATCATGG GTCCTT chr7:82073582-82073682 + 2 3.53e-05 T ATTGCATTTTAAAGC ACCACTGTTG chr6:97742499-97742599 - 53 3.53e-05 ATCACCCGTT TCTGCATATGAATCA ACACAAGTCC chr22:39510897-39510997 + 28 3.53e-05 tactaattta ttaacatgtccatga gagagaatga chr13:71344495-71344595 + 4 3.53e-05 TGA TTTGAATATCTAAAG CATTATAAAC chr8:53502388-53502488 - 45 3.84e-05 GGTGGCCACC GTTGCATGACAATGT GCAGCAGCAT chr17:2187827-2187927 - 6 3.84e-05 GAGAGAGAAG CTAGCATTTTAAATG TATTT chr10:120864373-12086447 + 40 3.84e-05 TGATCGAGCT TGTGCATAAATAAAG CAGGAGTTTC chr9:90684604-90684704 - 23 3.84e-05 TGAGGCCAAA TCACCATAAGAATAG CTTGTGCAGG chr5:129497955-129498055 + 17 4.17e-05 atacaagcat tgtacatttgaaaaa gcaatgattt chr3:4110680-4110780 + 37 4.17e-05 CAGGGCCAAC CGTGCATGATAAATG GAGCCATTGT chr7:141575303-141575403 - 66 4.52e-05 CCACTCCTAT TTAACATAACATTGG AAGTTCTGGC chr3:169489875-169489975 + 48 4.89e-05 CGAATTGACA CTTACATATCAAGGA CTTTACAAAA chr20:20352565-20352665 + 20 5.30e-05 GGAAACAGCC TTCGAATAACAATGA AGGAGAAACC chr5:17826683-17826783 + 37 6.17e-05 aaataccacg tttgcatttataagt gggaactaaa chr7:37064952-37065052 + 65 6.17e-05 ccagttgaga ttaacatctgaataa gtggactcaa chr8:13863631-13863731 - 79 7.75e-05 TATTGTT TAAACATAATAATGT ACGGTGATGA chr8:88244605-88244705 + 86 7.75e-05 AAAATTCTGA TTTGTATAAGTATGG chr2:168878393-168878493 + 42 2.94e-04 TACCAGCAAA TATACATATATATTG Aatacagatg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCATRWSAAWRR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:75407706-75407806 5.6e-09 42_[+1]_43 chr4:10456843-10456943 1.4e-08 55_[+1]_30 chr12:102300944-10230104 2.3e-08 17_[+1]_68 chr2:22917838-22917938 3.5e-08 62_[+1]_23 chr1:46509517-46509617 1.1e-07 52_[-1]_33 chr7:75230929-75231029 1.1e-07 52_[+1]_33 chr2:90117153-90117253 1.7e-07 34_[+1]_51 chr6:24321781-24321881 2.4e-07 78_[-1]_7 chr5:138901985-138902085 4.1e-07 82_[+1]_3 chr11:1595493-1595593 4.1e-07 48_[-1]_37 chr18:47291729-47291829 4.1e-07 71_[-1]_14 chr8:87289278-87289378 4.7e-07 51_[-1]_34 chr5:38660428-38660528 5.4e-07 31_[+1]_54 chr13:30911130-30911230 6.5e-07 55_[-1]_30 chr2:98386983-98387083 7.5e-07 22_[-1]_63 chr15:42676918-42677018 8.5e-07 52_[+1]_33 chr8:82512568-82512668 8.5e-07 29_[+1]_56 chr1:91193563-91193663 9.8e-07 25_[-1]_60 chr4:5914591-5914691 1.3e-06 44_[+1]_41 chr3:7793791-7793891 1.7e-06 27_[-1]_58 chr4:174963935-174964035 1.7e-06 56_[-1]_29 chr1:101023621-101023721 1.9e-06 2_[-1]_83 chr6:14970392-14970492 1.9e-06 59_[+1]_26 chr12:114299658-11429975 1.9e-06 8_[+1]_77 chr3:114075037-114075137 2.2e-06 55_[+1]_30 chr14:66797068-66797168 2.4e-06 17_[-1]_68 chr15:49524610-49524710 2.4e-06 21_[-1]_64 chr11:9058809-9058909 2.4e-06 43_[-1]_42 chrX:24148600-24148700 2.8e-06 39_[-1]_46 chr14:23282252-23282352 3.1e-06 26_[+1]_59 chrX:119274223-119274323 3.1e-06 15_[-1]_70 chr11:84865767-84865867 3.5e-06 3_[+1]_82 chr20:34961212-34961312 4.3e-06 10_[+1]_75 chr18:57534541-57534641 4.3e-06 56_[+1]_29 chr7:80785301-80785401 4.8e-06 20_[-1]_65 chr4:26649506-26649606 4.8e-06 31_[+1]_54 chr17:13913367-13913467 4.8e-06 57_[+1]_28 chr13:24173763-24173863 4.8e-06 15_[-1]_70 chr6:13535622-13535722 5.4e-06 33_[-1]_52 chr3:38578156-38578256 5.4e-06 75_[-1]_10 chr5:67318609-67318709 6.1e-06 23_[+1]_62 chr7:152683539-152683639 6.7e-06 72_[+1]_13 chr5:15554676-15554776 6.7e-06 83_[+1]_2 chr6:21935916-21936016 6.7e-06 78_[-1]_7 chr13:24430525-24430625 7.4e-06 48_[-1]_37 chr11:100146230-10014633 8.2e-06 74_[+1]_11 chr1:165826257-165826357 9.1e-06 71_[+1]_14 chr6:27442462-27442562 9.1e-06 17_[+1]_68 chr2:25312882-25312982 9.1e-06 71_[+1]_14 chr13:22274414-22274514 1.1e-05 40_[+1]_45 chr11:92245081-92245181 1.1e-05 19_[+1]_66 chr14:58938651-58938751 1.2e-05 12_[-1]_73 chr2:166535674-166535774 1.3e-05 3_[-1]_82 chr5:31637533-31637633 1.5e-05 59_[+1]_26 chr7:89617022-89617122 1.6e-05 37_[+1]_48 chr16:72319278-72319378 1.8e-05 81_[+1]_4 chr4:779187-779287 1.9e-05 58_[-1]_27 chr9:35203614-35203714 1.9e-05 52_[+1]_33 chr7:8246652-8246752 1.9e-05 60_[+1]_25 chr22:45203225-45203325 2.1e-05 45_[-1]_40 chr1:95983980-95984080 2.1e-05 31_[+1]_54 chr4:90871112-90871212 2.5e-05 24_[+1]_61 chr4:104978519-104978619 2.5e-05 34_[+1]_51 chr5:10103194-10103294 2.5e-05 11_[+1]_74 chr3:131042074-131042174 2.8e-05 64_[-1]_21 chr9:120578611-120578711 2.8e-05 9_[+1]_76 chr6:10415479-10415579 3.3e-05 13_[+1]_72 chr5:58520328-58520428 3.3e-05 59_[-1]_26 chr3:12826676-12826776 3.3e-05 48_[+1]_37 chr17:37551645-37551745 3.5e-05 6_[-1]_79 chr7:82073582-82073682 3.5e-05 1_[+1]_84 chr6:97742499-97742599 3.5e-05 52_[-1]_33 chr22:39510897-39510997 3.5e-05 27_[+1]_58 chr13:71344495-71344595 3.5e-05 3_[+1]_82 chr8:53502388-53502488 3.8e-05 44_[-1]_41 chr17:2187827-2187927 3.8e-05 5_[-1]_80 chr10:120864373-12086447 3.8e-05 39_[+1]_46 chr9:90684604-90684704 3.8e-05 22_[-1]_63 chr5:129497955-129498055 4.2e-05 16_[+1]_69 chr3:4110680-4110780 4.2e-05 36_[+1]_49 chr7:141575303-141575403 4.5e-05 65_[-1]_20 chr3:169489875-169489975 4.9e-05 47_[+1]_38 chr20:20352565-20352665 5.3e-05 19_[+1]_66 chr5:17826683-17826783 6.2e-05 36_[+1]_49 chr7:37064952-37065052 6.2e-05 64_[+1]_21 chr8:13863631-13863731 7.7e-05 78_[-1]_7 chr8:88244605-88244705 7.7e-05 85_[+1] chr2:168878393-168878493 0.00029 41_[+1]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCATRWSAAWRR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGCATRWSAAWRR width=15 seqs=88 chr5:75407706-75407806 ( 43) TTTGCATATCAAAGG 1 chr4:10456843-10456943 ( 56) TTTGCATAACAAAGA 1 chr12:102300944-10230104 ( 18) TTTGCATAACAAAAG 1 chr2:22917838-22917938 ( 63) TTTGCATATGAAAGG 1 chr1:46509517-46509617 ( 53) TTTGCATAACAATTG 1 chr7:75230929-75231029 ( 53) TCTGCATTACAAAGG 1 chr2:90117153-90117253 ( 35) TTTGCATATCAAAGC 1 chr6:24321781-24321881 ( 79) TTTGCATTTCAAAGA 1 chr5:138901985-138902085 ( 83) TTTGCATAAGAATAA 1 chr11:1595493-1595593 ( 49) TTTGCATGAAAATGG 1 chr18:47291729-47291829 ( 72) TTTGCATAACAATTA 1 chr8:87289278-87289378 ( 52) TTAGCATGTGAATGG 1 chr5:38660428-38660528 ( 32) TCTGCATAATAAAAG 1 chr13:30911130-30911230 ( 56) TTAGCATGTTAAAGG 1 chr2:98386983-98387083 ( 23) TTTGCATTTGAAAAG 1 chr15:42676918-42677018 ( 53) TCAGCATGACAAAAG 1 chr8:82512568-82512668 ( 30) TCAGCATTTCAAAGG 1 chr1:91193563-91193663 ( 26) TGTGCATGAGAATGG 1 chr4:5914591-5914691 ( 45) CTTGCATATGAAAGG 1 chr3:7793791-7793891 ( 28) TGTACATAACAATGG 1 chr4:174963935-174964035 ( 57) CCTGCATGACAATGG 1 chr1:101023621-101023721 ( 3) TTTACATGACAAAAA 1 chr6:14970392-14970492 ( 60) CTTGCATAACAAAGC 1 chr12:114299658-11429975 ( 9) TCAGCATGACAAATG 1 chr3:114075037-114075137 ( 56) TTAGCATGAGAATAA 1 chr14:66797068-66797168 ( 18) TCTGCATAACAAGGA 1 chr15:49524610-49524710 ( 22) TTTGCATAAGTAAAG 1 chr11:9058809-9058909 ( 44) TTTGCATCAGAAAAG 1 chrX:24148600-24148700 ( 40) TCAGCATGATAATGA 1 chr14:23282252-23282352 ( 27) TCCGCATAACAAAGG 1 chrX:119274223-119274323 ( 16) TTTACATATGAAAGC 1 chr11:84865767-84865867 ( 4) TTAGCATATGAATGT 1 chr20:34961212-34961312 ( 11) TTAGCATCTCAAAGA 1 chr18:57534541-57534641 ( 57) TTAACATGAGAATGA 1 chr7:80785301-80785401 ( 21) TTTGCATGAAAATGT 1 chr4:26649506-26649606 ( 32) TTTCCATTACAAAGG 1 chr17:13913367-13913467 ( 58) TTTGAATGACAAAAG 1 chr13:24173763-24173863 ( 16) TCTGCATGATAAAAC 1 chr6:13535622-13535722 ( 34) CTTGCATATAAATGG 1 chr3:38578156-38578256 ( 76) TTTACATAACTAAGA 1 chr5:67318609-67318709 ( 24) TATACATAACAAAAG 1 chr7:152683539-152683639 ( 73) TTAGCATTTTAATTG 1 chr5:15554676-15554776 ( 84) TCTGCATATTCAAGG 1 chr6:21935916-21936016 ( 79) TTAGCATACCAAAGG 1 chr13:24430525-24430625 ( 49) TTTGCATTTAAATAA 1 chr11:100146230-10014633 ( 75) TGTGCATTTTAAAAG 1 chr1:165826257-165826357 ( 72) TTAACATGACAAAAC 1 chr6:27442462-27442562 ( 18) TAAGCATATGAAAAG 1 chr2:25312882-25312982 ( 72) TTTGCATTTCAAGTG 1 chr13:22274414-22274514 ( 41) TCTGCATTAGAATTC 1 chr11:92245081-92245181 ( 20) TTTTCATGATAATGG 1 chr14:58938651-58938751 ( 13) TCAACATTTCAATAG 1 chr2:166535674-166535774 ( 4) TCAGAATAACAAAGA 1 chr5:31637533-31637633 ( 60) TTTGCATATTCATTG 1 chr7:89617022-89617122 ( 38) ATTACATATCAAAGA 1 chr16:72319278-72319378 ( 82) TTAGCATGACAAGAC 1 chr4:779187-779287 ( 59) TTTGCATCACAATTT 1 chr9:35203614-35203714 ( 53) TATGCATGAGCAAGG 1 chr7:8246652-8246752 ( 61) TCTAAATGACAATGG 1 chr22:45203225-45203325 ( 46) TTTTCATTACAAAGC 1 chr1:95983980-95984080 ( 32) ACTGCATGATAAAAG 1 chr4:90871112-90871212 ( 25) TTTACATAATTATGC 1 chr4:104978519-104978619 ( 35) TGAGCATGATAATGT 1 chr5:10103194-10103294 ( 12) TCTGCATTTAAATAC 1 chr3:131042074-131042174 ( 65) TTTGCAAAACAATAA 1 chr9:120578611-120578711 ( 10) TATGCATTATAAATA 1 chr6:10415479-10415579 ( 14) TTAGCATATCAACAA 1 chr5:58520328-58520428 ( 60) TCAACATATGAATTA 1 chr3:12826676-12826776 ( 49) TTTGCATAACACATA 1 chr17:37551645-37551745 ( 7) ATTGCATAATCATGG 1 chr7:82073582-82073682 ( 2) ATTGCATTTTAAAGC 1 chr6:97742499-97742599 ( 53) TCTGCATATGAATCA 1 chr22:39510897-39510997 ( 28) TTAACATGTCCATGA 1 chr13:71344495-71344595 ( 4) TTTGAATATCTAAAG 1 chr8:53502388-53502488 ( 45) GTTGCATGACAATGT 1 chr17:2187827-2187927 ( 6) CTAGCATTTTAAATG 1 chr10:120864373-12086447 ( 40) TGTGCATAAATAAAG 1 chr9:90684604-90684704 ( 23) TCACCATAAGAATAG 1 chr5:129497955-129498055 ( 17) TGTACATTTGAAAAA 1 chr3:4110680-4110780 ( 37) CGTGCATGATAAATG 1 chr7:141575303-141575403 ( 66) TTAACATAACATTGG 1 chr3:169489875-169489975 ( 48) CTTACATATCAAGGA 1 chr20:20352565-20352665 ( 20) TTCGAATAACAATGA 1 chr5:17826683-17826783 ( 37) TTTGCATTTATAAGT 1 chr7:37064952-37065052 ( 65) TTAACATCTGAATAA 1 chr8:13863631-13863731 ( 79) TAAACATAATAATGT 1 chr8:88244605-88244705 ( 86) TTTGTATAAGTATGG 1 chr2:168878393-168878493 ( 42) TATACATATATATTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCATRWSAAWRR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 51600 bayes= 10.2209 E= 9.1e-038 -260 -149 -429 164 -202 2 -149 118 10 -330 -1310 130 -36 -330 173 -360 -228 206 -1310 -460 185 -1310 -1310 -1310 -460 -1310 -1310 184 79 -230 29 -44 110 -429 -1310 52 -160 106 10 -44 162 -197 -1310 -160 182 -429 -1310 -460 89 -429 -230 64 15 -429 123 -80 4 -84 119 -180 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCATRWSAAWRR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 88 E= 9.1e-038 0.045455 0.079545 0.011364 0.863636 0.068182 0.227273 0.079545 0.625000 0.295455 0.022727 0.000000 0.681818 0.215909 0.022727 0.738636 0.022727 0.056818 0.931818 0.000000 0.011364 1.000000 0.000000 0.000000 0.000000 0.011364 0.000000 0.000000 0.988636 0.477273 0.045455 0.272727 0.204545 0.590909 0.011364 0.000000 0.397727 0.090909 0.465909 0.238636 0.204545 0.852273 0.056818 0.000000 0.090909 0.977273 0.011364 0.000000 0.011364 0.511364 0.011364 0.045455 0.431818 0.306818 0.011364 0.522727 0.159091 0.284091 0.125000 0.511364 0.079545 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCATRWSAAWRR MEME-1 regular expression -------------------------------------------------------------------------------- T[TC][TA][GA]CAT[AGT][AT][CGT]AA[AT][GA][GA] -------------------------------------------------------------------------------- Time 337.65 secs. ******************************************************************************** ******************************************************************************** MOTIF SCGGSBGCGSRGCVGGRGSCGGGRGSSBG MEME-2 width = 29 sites = 55 llr = 660 E-value = 3.0e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCGGSBGCGSRGCVGGRGSCGGGRGSSBG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:1111212:41221131111123:1:11 pos.-specific C 47214327162152212245322223431 probability G 53675451534824775732665584448 matrix T ::11:221111:12::1:12:1:1:123: bits 2.2 1.9 1.7 1.5 Relative 1.3 * * * * Entropy 1.1 * * * * (17.3 bits) 0.9 * * ** * * * 0.6 ** ** * * * ** * ** * * * 0.4 ***** * * ** ** * **** * * * 0.2 ************* *************** 0.0 ----------------------------- Multilevel GCGGGGGCGCGGCGGGGGCCGGGGGGGGG consensus CG CC AGA AC ACGTC CA CCC sequence T C C A TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGGSBGCGSRGCVGGRGSCGGGRGSSBG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr1:204381056-204381156 + 63 3.64e-13 GGTTGCATCA GCCggggcggggggggggggggggggggg ggggggAAT chr2:121345159-121345259 - 42 4.72e-11 CCGAGGGCGG CCGAGGGCGCGGCCCGGCCCGCGGGGCGG CTTTGTGCGT chr12:46121273-46121373 + 10 7.86e-11 GAGGCGGCG GCGGCGCGGCGGCAGGAGCCCGGGGTGTG TATAATGGTT chr11:615700-615800 - 14 2.10e-10 TGAGGGTCGG GCGGGGAGGGAGGCGGAGGCGGAGGCGGG GTTCCGCGGA chr4:40631800-40631900 - 61 1.75e-09 ACTGTGAGGC GGATGGCCTCGGCAGGGGGCGGGCGGCGG GAGGAGAGAG chr13:30424592-30424692 + 71 4.07e-09 AACCAACATg gcggcagcggcggcggcggcggcTGCCTG A chr17:40729652-40729752 + 62 2.24e-08 ACGGCTCCTT CCGGCGACGGGGGCGGGCCTCGAACGGTG ATTGGCTGAA chr17:17494899-17494999 - 13 3.25e-08 GTCCGGTTCC GGGGGCGCGTGGCTGCAGCGGGGCCCGCG TGGTGCCTCC chr3:185825402-185825502 - 63 3.68e-08 TTCATAAAA CCGGGCCCGCTGCGCGCCACAGGGGAGGG GCCTGGATCG chr11:65789956-65790056 - 12 4.15e-08 GCGGCTGAGG GCGGGCGGGCGCCTGGAGCCCGAGCTTCG CGGAAGGGCC chr12:6873637-6873737 + 43 4.68e-08 AGCAGGGTGT CCGAGACAGCAGGCGGGGCTGGGAGGTGG AGTGgaggga chr13:95359560-95359660 - 29 6.69e-08 CTTTCTTGCG CCCGCGGCCCAGCGGAGGCCGAGGGAGCC GTCCAAACTT chr1:216896729-216896829 - 60 7.53e-08 GGCCCCCCAA TCGGCTGCGCGGCTGGGCCGGTGGGACTG CATATGTAAA chr9:16154597-16154697 - 31 8.46e-08 GGTGGAGGGA GCGGGAGCGCGCCAGATGGCCGAGCGGCG AGGAGCTGCG chr17:46755833-46755933 - 50 8.46e-08 CTGACCCCTG CCGGCCGCCCGAGGGAAGGCGGCGCCCGG CCCAGCTCCG chr21:45552943-45553043 + 45 1.19e-07 AAAACCCGGA GGGGTCGCTCCGTGGGAGCCGGAGCCGCG AGGAGACAGT chr11:12621123-12621223 + 33 1.87e-07 GTTGGTACTG GGTGCTTCTCCGCAGCGGCCGCCAGGGGG AGCCTGGGCC chr2:54198401-54198501 - 6 2.34e-07 CCCAGAAGCC GGGGCTGCTCGGCTAGGGGGACCAGGCCG ACCTG chr11:67182994-67183094 - 15 2.90e-07 CCAGTGCCCA GCGGGGGCGGCGCGGGGCGGACGGACCGA CAGGGACCGA chr8:10588980-10589080 + 43 3.23e-07 tcatataagc gccggcacacagtaggcgctcaaggcctg cagaatgagt chr19:49222237-49222337 + 57 3.23e-07 CCCATAGAGG GCTGGCTCAGAGTGGAGGTCAGGAGGCCG CCCCTGAGAG chr17:77052607-77052707 + 43 3.60e-07 gatttatagc cggggagcagggtgggggtcagtgggtgg aaaattccta chr9:99256078-99256178 - 61 6.74e-07 GGAGGGGAGC GCCTGGAGGCAGCGCGAGTCCTGGGAGCG CGGGGATGAG chr1:50717534-50717634 - 35 7.46e-07 TGCATAGCAA CCGGCCGAGCAGCGCGGCAGAGGTGGCCA TGCATAAAAG chr16:11276162-11276262 - 70 9.14e-07 CT CCCTGTACCCGGCAGGGGTAGGGCGGGGA CATTTCCTGA chr2:181844977-181845077 - 18 1.01e-06 CAGAGAAGGC GGGGGCGCGGGCACCGTATCGCGGGGCCG CTGTGCCGCG chr20:49923355-49923455 + 40 1.12e-06 CTGAGTGGAA GGCTGGGCGCAGGTGGGCCTCGGCGTTAG GAAAGGCAAC chr6:10415479-10415579 - 53 1.50e-06 GGCCTTTATA CCTGTGTCGGAGCGGCCGGCGGCAGATTG TGGTACTGGC chr16:51796140-51796240 + 30 1.82e-06 CCACTCCTGG CCGCCCCAACAGCCGGCAGCCGCGGATGG CTCTGAAATC chr1:155532906-155533006 + 11 2.00e-06 CTCTGCCCAC CGGTGGTTGGAGGCCGCGGCGGCTGCGCG TTGAGTCGTT chr7:26897555-26897655 - 30 2.20e-06 ATTCTAAAAA CCGGGCTAAGGGTCGAGCGAGGGAGGCTG ACCTTTTCTT chr18:7923242-7923342 + 68 2.42e-06 TTAACACTCC ACAGGGAGATGGAAGGCGGCGGGGGTTGG TCAA chr2:24566725-24566825 + 13 2.42e-06 ACTTACTAAG CGGACTCCACAGACAGGGGAGGAGGGGTG AACCTGAAGA chr4:115519589-115519689 - 23 2.42e-06 GGATGCAGAC GCGCCTTCGTACCACGCGCTCGCAGGCTG GGCAAGGGGC chr19:29969619-29969719 - 42 2.66e-06 CACAGGTCTC GCTGGCCCCTAGAGGGAGCTCGAAGCCCC TCCAGCTCTG chr3:183146285-183146385 - 1 3.51e-06 AGTAAGGACC GGAGCTCCACTCCGGGGGTGGAGCGCGGG chr11:1595493-1595593 + 2 3.51e-06 C CCTGGGGGGCAGAGTGCCCTGGGCGGCGA TTGTTATAAT chr9:139462456-139462556 - 39 3.51e-06 CAGGGTTTTC GGGGCTTCTCCGCACGTGGCCTGGGTCAG ACTTCGTTCC chr2:71503721-71503821 - 42 3.51e-06 CCCGGCAGTC GCGGAATCCGGGCTCTGCGCGGCAGCCTG GGCTGCCGCC chr17:21212537-21212637 + 72 3.84e-06 tggaggatca gcaggtgcacacagcgggaggcgGAGGTG chr19:41222502-41222602 + 64 4.21e-06 TGCGTGAAGA ATGGGCGCGCGGCTGGACTCGTCACCGGG GGTTTTAG chr11:60609440-60609540 + 46 4.61e-06 CATAGGAAGG CGCCGGTTTCGGCGGGGGCTGCACGTGCG CAGGGGTGTG chr16:87799547-87799647 - 8 4.61e-06 CCGCACCTCT ACCCGGAAGCGGCTCGAACTCGGGGCCGG AAGTGAC chr1:210484445-210484545 + 36 5.51e-06 acacacacac acacacacacaGTGGCGGGGGGCGGGGGG TCTCATCTCT chr11:68039171-68039271 + 67 6.57e-06 AGCCCTGACA GCAGCTACCCGGACGGCAGTGCGAGCCCC TTACC chr9:94627466-94627566 - 11 7.17e-06 GTCACTGTAA CCGAGTGAAGAGCGCTGGCTGGAAGTGTG TAACCTGCCA chr17:47785671-47785771 - 25 8.53e-06 AGGTAAAGTC GCTGACGCTGGGCAGCAGCTAGACGGCGC TGAAGCTCCA chr17:73110165-73110265 - 8 1.10e-05 AGCTGTGGGG GCAGAGGCACGAAAAGGGACGGGACGGAG GACGTTT chr6:27551159-27551259 - 39 1.30e-05 GTGAGTGTCC CCGTCTGTCACGCGGGAGACCGGGGTTCG ATTCCCCGAC chr2:131094587-131094687 + 68 1.30e-05 Tgttcccata ccgggagtcgaacccgggccacctgggtg aaaa chr5:156692860-156692960 + 48 1.42e-05 GCAGGTCCTG GGTGCGCCGGCGGTACAGCGGAGAGCGTG GAGAGACCCT chr15:49447849-49447949 - 50 1.54e-05 TGCTAAGGCA CCAACCACTTCGGAGGAAACGGGGGGTGG TGCAGTCTCT chr1:173683905-173684005 + 36 1.67e-05 ACGACTACTT CCGGAGCCGCACCGGAACCCCTTGGCGGA TTATGTGGGT chr1:10003407-10003507 + 55 1.81e-05 CCACTCGCTG GCGTCCGGGCCGCTGGTGATCTCCGGTAG CACTCGGGCC chr6:28949871-28949971 - 69 1.54e-04 CGG GCCGCGGCGGTGAGAGCGCCGAATCCTAA CCACTAGACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGGSBGCGSRGCVGGRGSCGGGRGSSBG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:204381056-204381156 3.6e-13 62_[+2]_9 chr2:121345159-121345259 4.7e-11 41_[-2]_30 chr12:46121273-46121373 7.9e-11 9_[+2]_62 chr11:615700-615800 2.1e-10 13_[-2]_58 chr4:40631800-40631900 1.8e-09 60_[-2]_11 chr13:30424592-30424692 4.1e-09 70_[+2]_1 chr17:40729652-40729752 2.2e-08 61_[+2]_10 chr17:17494899-17494999 3.3e-08 12_[-2]_59 chr3:185825402-185825502 3.7e-08 62_[-2]_9 chr11:65789956-65790056 4.2e-08 11_[-2]_60 chr12:6873637-6873737 4.7e-08 42_[+2]_29 chr13:95359560-95359660 6.7e-08 28_[-2]_43 chr1:216896729-216896829 7.5e-08 59_[-2]_12 chr9:16154597-16154697 8.5e-08 30_[-2]_41 chr17:46755833-46755933 8.5e-08 49_[-2]_22 chr21:45552943-45553043 1.2e-07 44_[+2]_27 chr11:12621123-12621223 1.9e-07 32_[+2]_39 chr2:54198401-54198501 2.3e-07 5_[-2]_66 chr11:67182994-67183094 2.9e-07 14_[-2]_57 chr8:10588980-10589080 3.2e-07 42_[+2]_29 chr19:49222237-49222337 3.2e-07 56_[+2]_15 chr17:77052607-77052707 3.6e-07 42_[+2]_29 chr9:99256078-99256178 6.7e-07 60_[-2]_11 chr1:50717534-50717634 7.5e-07 34_[-2]_37 chr16:11276162-11276262 9.1e-07 69_[-2]_2 chr2:181844977-181845077 1e-06 17_[-2]_54 chr20:49923355-49923455 1.1e-06 39_[+2]_32 chr6:10415479-10415579 1.5e-06 52_[-2]_19 chr16:51796140-51796240 1.8e-06 29_[+2]_42 chr1:155532906-155533006 2e-06 10_[+2]_61 chr7:26897555-26897655 2.2e-06 29_[-2]_42 chr18:7923242-7923342 2.4e-06 67_[+2]_4 chr2:24566725-24566825 2.4e-06 12_[+2]_59 chr4:115519589-115519689 2.4e-06 22_[-2]_49 chr19:29969619-29969719 2.7e-06 41_[-2]_30 chr3:183146285-183146385 3.5e-06 [-2]_71 chr11:1595493-1595593 3.5e-06 1_[+2]_70 chr9:139462456-139462556 3.5e-06 38_[-2]_33 chr2:71503721-71503821 3.5e-06 41_[-2]_30 chr17:21212537-21212637 3.8e-06 71_[+2] chr19:41222502-41222602 4.2e-06 63_[+2]_8 chr11:60609440-60609540 4.6e-06 45_[+2]_26 chr16:87799547-87799647 4.6e-06 7_[-2]_64 chr1:210484445-210484545 5.5e-06 35_[+2]_36 chr11:68039171-68039271 6.6e-06 66_[+2]_5 chr9:94627466-94627566 7.2e-06 10_[-2]_61 chr17:47785671-47785771 8.5e-06 24_[-2]_47 chr17:73110165-73110265 1.1e-05 7_[-2]_64 chr6:27551159-27551259 1.3e-05 38_[-2]_33 chr2:131094587-131094687 1.3e-05 67_[+2]_4 chr5:156692860-156692960 1.4e-05 47_[+2]_24 chr15:49447849-49447949 1.5e-05 49_[-2]_22 chr1:173683905-173684005 1.7e-05 35_[+2]_36 chr1:10003407-10003507 1.8e-05 54_[+2]_17 chr6:28949871-28949971 0.00015 68_[-2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGGSBGCGSRGCVGGRGSCGGGRGSSBG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCGGSBGCGSRGCVGGRGSCGGGRGSSBG width=29 seqs=55 chr1:204381056-204381156 ( 63) GCCGGGGCGGGGGGGGGGGGGGGGGGGGG 1 chr2:121345159-121345259 ( 42) CCGAGGGCGCGGCCCGGCCCGCGGGGCGG 1 chr12:46121273-46121373 ( 10) GCGGCGCGGCGGCAGGAGCCCGGGGTGTG 1 chr11:615700-615800 ( 14) GCGGGGAGGGAGGCGGAGGCGGAGGCGGG 1 chr4:40631800-40631900 ( 61) GGATGGCCTCGGCAGGGGGCGGGCGGCGG 1 chr13:30424592-30424692 ( 71) GCGGCAGCGGCGGCGGCGGCGGCTGCCTG 1 chr17:40729652-40729752 ( 62) CCGGCGACGGGGGCGGGCCTCGAACGGTG 1 chr17:17494899-17494999 ( 13) GGGGGCGCGTGGCTGCAGCGGGGCCCGCG 1 chr3:185825402-185825502 ( 63) CCGGGCCCGCTGCGCGCCACAGGGGAGGG 1 chr11:65789956-65790056 ( 12) GCGGGCGGGCGCCTGGAGCCCGAGCTTCG 1 chr12:6873637-6873737 ( 43) CCGAGACAGCAGGCGGGGCTGGGAGGTGG 1 chr13:95359560-95359660 ( 29) CCCGCGGCCCAGCGGAGGCCGAGGGAGCC 1 chr1:216896729-216896829 ( 60) TCGGCTGCGCGGCTGGGCCGGTGGGACTG 1 chr9:16154597-16154697 ( 31) GCGGGAGCGCGCCAGATGGCCGAGCGGCG 1 chr17:46755833-46755933 ( 50) CCGGCCGCCCGAGGGAAGGCGGCGCCCGG 1 chr21:45552943-45553043 ( 45) GGGGTCGCTCCGTGGGAGCCGGAGCCGCG 1 chr11:12621123-12621223 ( 33) GGTGCTTCTCCGCAGCGGCCGCCAGGGGG 1 chr2:54198401-54198501 ( 6) GGGGCTGCTCGGCTAGGGGGACCAGGCCG 1 chr11:67182994-67183094 ( 15) GCGGGGGCGGCGCGGGGCGGACGGACCGA 1 chr8:10588980-10589080 ( 43) GCCGGCACACAGTAGGCGCTCAAGGCCTG 1 chr19:49222237-49222337 ( 57) GCTGGCTCAGAGTGGAGGTCAGGAGGCCG 1 chr17:77052607-77052707 ( 43) CGGGGAGCAGGGTGGGGGTCAGTGGGTGG 1 chr9:99256078-99256178 ( 61) GCCTGGAGGCAGCGCGAGTCCTGGGAGCG 1 chr1:50717534-50717634 ( 35) CCGGCCGAGCAGCGCGGCAGAGGTGGCCA 1 chr16:11276162-11276262 ( 70) CCCTGTACCCGGCAGGGGTAGGGCGGGGA 1 chr2:181844977-181845077 ( 18) GGGGGCGCGGGCACCGTATCGCGGGGCCG 1 chr20:49923355-49923455 ( 40) GGCTGGGCGCAGGTGGGCCTCGGCGTTAG 1 chr6:10415479-10415579 ( 53) CCTGTGTCGGAGCGGCCGGCGGCAGATTG 1 chr16:51796140-51796240 ( 30) CCGCCCCAACAGCCGGCAGCCGCGGATGG 1 chr1:155532906-155533006 ( 11) CGGTGGTTGGAGGCCGCGGCGGCTGCGCG 1 chr7:26897555-26897655 ( 30) CCGGGCTAAGGGTCGAGCGAGGGAGGCTG 1 chr18:7923242-7923342 ( 68) ACAGGGAGATGGAAGGCGGCGGGGGTTGG 1 chr2:24566725-24566825 ( 13) CGGACTCCACAGACAGGGGAGGAGGGGTG 1 chr4:115519589-115519689 ( 23) GCGCCTTCGTACCACGCGCTCGCAGGCTG 1 chr19:29969619-29969719 ( 42) GCTGGCCCCTAGAGGGAGCTCGAAGCCCC 1 chr3:183146285-183146385 ( 1) GGAGCTCCACTCCGGGGGTGGAGCGCGGG 1 chr11:1595493-1595593 ( 2) CCTGGGGGGCAGAGTGCCCTGGGCGGCGA 1 chr9:139462456-139462556 ( 39) GGGGCTTCTCCGCACGTGGCCTGGGTCAG 1 chr2:71503721-71503821 ( 42) GCGGAATCCGGGCTCTGCGCGGCAGCCTG 1 chr17:21212537-21212637 ( 72) GCAGGTGCACACAGCGGGAGGCGGAGGTG 1 chr19:41222502-41222602 ( 64) ATGGGCGCGCGGCTGGACTCGTCACCGGG 1 chr11:60609440-60609540 ( 46) CGCCGGTTTCGGCGGGGGCTGCACGTGCG 1 chr16:87799547-87799647 ( 8) ACCCGGAAGCGGCTCGAACTCGGGGCCGG 1 chr1:210484445-210484545 ( 36) ACACACACACAGTGGCGGGGGGCGGGGGG 1 chr11:68039171-68039271 ( 67) GCAGCTACCCGGACGGCAGTGCGAGCCCC 1 chr9:94627466-94627566 ( 11) CCGAGTGAAGAGCGCTGGCTGGAAGTGTG 1 chr17:47785671-47785771 ( 25) GCTGACGCTGGGCAGCAGCTAGACGGCGC 1 chr17:73110165-73110265 ( 8) GCAGAGGCACGAAAAGGGACGGGACGGAG 1 chr6:27551159-27551259 ( 39) CCGTCTGTCACGCGGGAGACCGGGGTTCG 1 chr2:131094587-131094687 ( 68) CCGGGAGTCGAACCCGGGCCACCTGGGTG 1 chr5:156692860-156692960 ( 48) GGTGCGCCGGCGGTACAGCGGAGAGCGTG 1 chr15:49447849-49447949 ( 50) CCAACCACTTCGGAGGAAACGGGGGGTGG 1 chr1:173683905-173684005 ( 36) CCGGAGCCGCACCGGAACCCCTTGGCGGA 1 chr1:10003407-10003507 ( 55) GCGTCCGGGCCGCTGGTGATCTCCGGTAG 1 chr6:28949871-28949971 ( 69) GCCGCGGCGGTGAGAGCGCCGAATCCTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGGSBGCGSRGCVGGRGSCGGGRGSSBG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 10.8251 E= 3.0e-018 -193 77 124 -392 -1243 170 19 -392 -93 -45 133 -112 -160 -130 163 -112 -160 70 119 -293 -134 47 70 -34 -61 -30 108 -76 -134 163 -81 -193 -34 -62 114 -93 -392 138 47 -160 39 -45 90 -234 -234 -81 187 -1243 -76 129 -30 -134 -34 -3 77 -61 -160 8 155 -392 -134 -103 174 -293 -2 -16 102 -193 -160 -3 163 -1243 -112 90 55 -112 -234 124 -30 -23 -93 29 138 -1243 -160 -45 151 -134 -34 8 119 -293 -2 -45 108 -160 -293 -45 184 -1243 -134 47 97 -93 -1243 70 97 -47 -160 29 77 -12 -134 -162 187 -1243 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGGSBGCGSRGCVGGRGSCGGGRGSSBG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 55 E= 3.0e-018 0.072727 0.381818 0.527273 0.018182 0.000000 0.727273 0.254545 0.018182 0.145455 0.163636 0.563636 0.127273 0.090909 0.090909 0.690909 0.127273 0.090909 0.363636 0.509091 0.036364 0.109091 0.309091 0.363636 0.218182 0.181818 0.181818 0.472727 0.163636 0.109091 0.690909 0.127273 0.072727 0.218182 0.145455 0.490909 0.145455 0.018182 0.581818 0.309091 0.090909 0.363636 0.163636 0.418182 0.054545 0.054545 0.127273 0.818182 0.000000 0.163636 0.545455 0.181818 0.109091 0.218182 0.218182 0.381818 0.181818 0.090909 0.236364 0.654545 0.018182 0.109091 0.109091 0.745455 0.036364 0.272727 0.200000 0.454545 0.072727 0.090909 0.218182 0.690909 0.000000 0.127273 0.418182 0.327273 0.127273 0.054545 0.527273 0.181818 0.236364 0.145455 0.272727 0.581818 0.000000 0.090909 0.163636 0.636364 0.109091 0.218182 0.236364 0.509091 0.036364 0.272727 0.163636 0.472727 0.090909 0.036364 0.163636 0.800000 0.000000 0.109091 0.309091 0.436364 0.145455 0.000000 0.363636 0.436364 0.200000 0.090909 0.272727 0.381818 0.254545 0.109091 0.072727 0.818182 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGGSBGCGSRGCVGGRGSCGGGRGSSBG MEME-2 regular expression -------------------------------------------------------------------------------- [GC][CG]GG[GC][GCT]GC[GA][CG][GA]GC[GAC][GC]G[GAC][GC][CG][CT][GC]G[GCA][GA]G[GC][GCT][GCT]G -------------------------------------------------------------------------------- Time 632.14 secs. ******************************************************************************** ******************************************************************************** MOTIF AARAMAGAAARARRAADRMAA MEME-3 width = 21 sites = 70 llr = 744 E-value = 1.1e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif AARAMAGAAARARRAADRMAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 664949:78748655825686 pos.-specific C 1:213::1:::::22:1:3:: probability G 23412:93126:341144:11 matrix T 111:11:::1:21:213:112 bits 2.2 1.9 1.7 1.5 ** Relative 1.3 ** Entropy 1.1 * ** * * * (15.3 bits) 0.9 * **** ** * * 0.6 * ******** * *** 0.4 ** * ********* * **** 0.2 **************** **** 0.0 --------------------- Multilevel AAAAAAGAAAGAAAAAGAAAA consensus GGG C G GATGGC TGC T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARAMAGAAARARRAADRMAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr19:55641586-55641686 + 16 1.49e-12 aaaacaaaaa aagaaaGAAAGAAAAAGAAAA TCAACTGTtg chr12:10051870-10051970 + 67 1.14e-08 aacagaggag aagaaaggaaaaagaaggcat ttttaaagga chr2:135771405-135771505 - 4 3.15e-08 TGAAAAAGTA AATAAAGAAAGAGGAAAAAAT AGG chr6:14970392-14970492 - 79 5.06e-08 G AACACAGAGAGAAGCAAGAAA TGATGCTTTG chr1:55279356-55279456 - 52 6.86e-08 TTTTTTCTAA GAAAAAGAGAGAAAAAGGAAT CTGCTATGCC chr17:13122813-13122913 - 46 7.95e-08 ATTATAGAAG TAGACAGAATGAAGAAGGCAA GTAAGAGTTA chrX:124338165-124338265 - 48 1.41e-07 GGAGTCTTGG GGAAAAGGAGAAAAAAAAAAA AACCTCGGCT chr2:8425177-8425277 + 24 2.78e-07 TCAAGGGGGA GGAAAAGAAAGAGAAATGAGA ACAAATATCT chr4:103221146-103221246 - 36 3.16e-07 CACAGAGGGG TAAAAAGGAAGATGTAGGAAA AAGAGGGGTG chr11:133727154-13372725 - 80 4.09e-07 . AGGCAAGAAAAATAAATGAAA GGCATTCAGA chr7:91068680-91068780 - 71 5.93e-07 AGGTTAAAA GGCCCAGAAAGAAACATAAAA CAGATGGACC chr20:5097385-5097485 - 55 7.55e-07 TTGTTTAACC AAAATAGAAAGAACATGGCAA AACCCCATCT chr12:57756471-57756571 - 78 7.55e-07 TC AAAAAATAAAATAAAATAAAA TAAAAATAAA chr4:174963935-174964035 - 7 8.50e-07 ATCCAGGGAG GACAGAGGAAGAAGAAAACTA ACTACT chr11:36175183-36175283 + 31 8.50e-07 CTGCTTCTTG AACAAAGGAGAAGGGAGGAAT GCAGCTATGT chr5:44220548-44220648 + 70 9.56e-07 CAGAGGGAGA GGGACAGAGAGAGACAGAATA AGCGGATTCA chr1:231615857-231615957 - 21 9.56e-07 GAATACTATG CAGCCAGAAAAAAGAACAAAA TCACGTCTTC chr2:167620869-167620969 - 45 9.56e-07 GCCTTAGTTC AAAACAGGAAGAATGAGAAAA GGTGGTGCTA chr3:7793791-7793891 + 4 1.35e-06 TAG AGAAATGAAAGATCCAGGAAA CATCCATTGT chr10:126154777-12615487 - 39 1.35e-06 TCTTTATGCA AACACAGCAGGAGAAATACAT TCTTGCATTT chr4:103133030-103133130 - 71 1.51e-06 AAAAGCACC AAGGAAGGAGGAAGCATAAAG TAGATCAAAG chr15:52403459-52403559 + 55 1.51e-06 gcctcaaaga aaaaaagaaaaaGGTCTAAAT GGAAACTGCC chr1:95391277-95391377 + 38 1.69e-06 CGCTTTGGCC AGAACAGCAGAAAGGAGACAA TGAGCGTTCT chrX:153113870-153113970 - 11 1.69e-06 ACAGGGCCAT CGGAGAGAAAGAAAAACGCAG CTGGACTCTT chr12:90342785-90342885 - 28 1.69e-06 ATGATTTTTT AAAACATAAAGAAGAGGACAA CTGTGCCATT chr13:56741640-56741740 - 43 1.88e-06 GAGAGCTCAG AGAACAGGAAAATGAGGGCAA ACTTTGATCT chr11:41408323-41408423 - 36 2.10e-06 TACACAAAGG AATAAAGACAAAAGAATAAAG AACCACACTT chr2:181615714-181615814 - 12 2.34e-06 CTTTGTCCAC AATAGAGAAAGAGCTAGAAGA GTTGGGAAAA chr15:38117948-38118048 + 12 2.34e-06 CAGCAAGTAC AGGAAAGAAAATACTAAAATA ATCTCAAACT chr3:183852512-183852612 - 76 3.21e-06 CATA AATAGAGAAGGTGGCAGGCAT ATAGTAGGGA chr19:12377507-12377607 - 73 3.56e-06 CTTTTGT CCAAGAGGAAGAAGAAAGAAA GTCCCATTAG chr6:118722719-118722819 - 8 3.94e-06 TAATCAATTG AACACAGCAAAATGAAGTAAA ATGCACC chr3:237093-237193 - 65 3.94e-06 AGTAGAAACA AAGATAGAATATTAAATAAAA TTCCAACAGG chr5:17826683-17826783 + 8 3.94e-06 gcaaagt aacacaggaacagaaaaataa ataccacgtt chr3:59623120-59623220 - 7 3.94e-06 AGTGCCCTGC AGGACAGAAAGAACAAGAGTG CTAGAG chr6:135354807-135354907 + 17 4.36e-06 TTACTTTGTT ATAAAAGAAGGTAACACAATA GTGCTGCTAT chr20:10287011-10287111 - 28 4.82e-06 TGCCACCGAG GAGAGAAAATGAAAAATGAAA CTCAAGACCT chr6:102699580-102699680 + 64 4.82e-06 AACAAAAATT AGTACAGACAATAAAAAAAAA GCAGGGTTTT chr1:22032956-22033056 + 75 5.32e-06 TCTAAAATCT GAAAGAGAATGAAGCAATCAA CTGTC chr12:23208044-23208144 - 11 5.32e-06 TGTGTCGGAG GTGGGAGAAAGAGCCAAGAAA GTGAAGAAAG chr10:16483824-16483924 - 8 5.32e-06 TAATAAGTAG GGAACAGGAAAAAAAAAAAGG CTGATTA chr10:36891643-36891743 - 59 5.32e-06 AAATGGGAGG GAAAAAGAGAGAGATTTACAA TCTCGCCTTG chr18:25828733-25828833 + 49 5.87e-06 tattcaacag attacaggaggaagtatgaat attcatgagg chr8:121405399-121405499 - 27 5.87e-06 AGGCAGTTAG AAGACATGAAAAACAAGATAA TAGGCCACAG chr10:129557988-12955808 - 31 5.87e-06 GAAATTGTCA CAGCAAGAAAAAGCTAAGAAA ACATGATCAC chr20:42486663-42486763 - 79 5.87e-06 T GATAAAGGATGTAAAACACAA TGAGAATGAT chr2:192770130-192770230 - 24 7.13e-06 TCTTCGTGAG AGCATAGAAGAAAGCACAATA AAGGTCAACT chr11:110813969-11081406 + 34 7.13e-06 CCACCAGCCT TCAAAAGGAAGAGGaataata ataataataa chr12:66283484-66283584 + 68 7.13e-06 tcaatagctg atgaatgaaagagccaggcag ggcagactgg chr13:51857687-51857787 + 73 7.85e-06 CTGCAAACAT TAGGAAGAAGGAGAAAAATAA TTCAGAG chr14:83730850-83730950 - 3 9.48e-06 GCACATTCTT ATAACAGAAAAAAATATCAAG TT chrX:15927917-15928017 - 52 9.48e-06 CATGGGAGGT AGAGAAGAGGAAGAAAGGCAT GGAGCAAAGG chr19:38461672-38461772 - 56 1.04e-05 CCCATTCTCC AAAAAACAAACAAACAAACAA ACAAACAAAA chr3:58947717-58947817 - 21 1.14e-05 CCACCCTAAG AAACTAGAAAGAGAACAGCAA ACTAAATGCA chr5:75407706-75407806 - 4 1.25e-05 GTGACCTTTT AAGAAAGGAAATGGGTGGCAT CAC chr1:156345932-156346032 + 2 1.25e-05 A TAGAAAGAAACTAAAAAGTAA AATCATCCTT chr2:131094587-131094687 + 9 1.37e-05 TTTTCAAG TTGAAAGAAAAAAATATACAC CCGCAAAAAA chr12:114841710-11484181 + 15 1.50e-05 GGGTGGGGAG GACAGAGAGAGAACGAGAGAA AGGTTGGAGA chr12:67731407-67731507 + 13 1.78e-05 taggcaattt ataaaagaaagaggtttaatt agacttacag chr13:61253502-61253602 - 7 1.95e-05 CTGAAAACAT TACATAGAAAATTGCAGAAAT AAACAA chr7:3809369-3809469 - 21 2.31e-05 TAGGGACCCC AGGACTGGAGGAAGATCGCAA CAAAGAACGT chr2:15827507-15827607 - 47 2.31e-05 TATAGGAGTC AGAAGAGGATGAGACACAGAT ATAAGAGGAA chr1:176866595-176866695 + 55 2.31e-05 CGTGAGCGGG AGGAAAAAAAAATGGATAAAT CTCACTTTGG chr15:42676918-42677018 - 75 2.74e-05 CTTCC AAGAAAGACGATACAGTGAAA AGCAGGGCTT chr1:91749355-91749455 - 64 3.23e-05 GGAGAACTGC AAAAGTGAAAGTAATACTAAA AAAATACTCC chr7:84386993-84387093 + 3 3.23e-05 AC GTGAGAGAAAGAAACCACAAA TGAGACCCCC chr3:42605241-42605341 - 49 3.50e-05 AGACATTTTA AAGGAAGCGGAAGAAAGACAG TCTCAGGAAT chr5:43595789-43595889 + 71 4.12e-05 ttctacaaaT AAAAGagaatgttacgtaaat ggaatagta chr5:14236945-14237045 - 75 5.22e-05 AGGTT ATCACAGAGTGTAACAGGAGA GGCTGAGAAG chrX:9141507-9141607 + 59 1.02e-04 aaagagcttc tacacagcaaaagaaacgatc cacaaagtta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARAMAGAAARARRAADRMAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:55641586-55641686 1.5e-12 15_[+3]_64 chr12:10051870-10051970 1.1e-08 66_[+3]_13 chr2:135771405-135771505 3.2e-08 3_[-3]_76 chr6:14970392-14970492 5.1e-08 78_[-3]_1 chr1:55279356-55279456 6.9e-08 51_[-3]_28 chr17:13122813-13122913 8e-08 45_[-3]_34 chrX:124338165-124338265 1.4e-07 47_[-3]_32 chr2:8425177-8425277 2.8e-07 23_[+3]_56 chr4:103221146-103221246 3.2e-07 35_[-3]_44 chr11:133727154-13372725 4.1e-07 79_[-3] chr7:91068680-91068780 5.9e-07 70_[-3]_9 chr20:5097385-5097485 7.5e-07 54_[-3]_25 chr12:57756471-57756571 7.5e-07 77_[-3]_2 chr4:174963935-174964035 8.5e-07 6_[-3]_73 chr11:36175183-36175283 8.5e-07 30_[+3]_49 chr5:44220548-44220648 9.6e-07 69_[+3]_10 chr1:231615857-231615957 9.6e-07 20_[-3]_59 chr2:167620869-167620969 9.6e-07 44_[-3]_35 chr3:7793791-7793891 1.3e-06 3_[+3]_76 chr10:126154777-12615487 1.3e-06 38_[-3]_41 chr4:103133030-103133130 1.5e-06 70_[-3]_9 chr15:52403459-52403559 1.5e-06 54_[+3]_25 chr1:95391277-95391377 1.7e-06 37_[+3]_42 chrX:153113870-153113970 1.7e-06 10_[-3]_69 chr12:90342785-90342885 1.7e-06 27_[-3]_52 chr13:56741640-56741740 1.9e-06 42_[-3]_37 chr11:41408323-41408423 2.1e-06 35_[-3]_44 chr2:181615714-181615814 2.3e-06 11_[-3]_68 chr15:38117948-38118048 2.3e-06 11_[+3]_68 chr3:183852512-183852612 3.2e-06 75_[-3]_4 chr19:12377507-12377607 3.6e-06 72_[-3]_7 chr6:118722719-118722819 3.9e-06 7_[-3]_72 chr3:237093-237193 3.9e-06 64_[-3]_15 chr5:17826683-17826783 3.9e-06 7_[+3]_72 chr3:59623120-59623220 3.9e-06 6_[-3]_73 chr6:135354807-135354907 4.4e-06 16_[+3]_63 chr20:10287011-10287111 4.8e-06 27_[-3]_52 chr6:102699580-102699680 4.8e-06 63_[+3]_16 chr1:22032956-22033056 5.3e-06 74_[+3]_5 chr12:23208044-23208144 5.3e-06 10_[-3]_69 chr10:16483824-16483924 5.3e-06 7_[-3]_72 chr10:36891643-36891743 5.3e-06 58_[-3]_21 chr18:25828733-25828833 5.9e-06 48_[+3]_31 chr8:121405399-121405499 5.9e-06 26_[-3]_53 chr10:129557988-12955808 5.9e-06 30_[-3]_49 chr20:42486663-42486763 5.9e-06 78_[-3]_1 chr2:192770130-192770230 7.1e-06 23_[-3]_56 chr11:110813969-11081406 7.1e-06 33_[+3]_46 chr12:66283484-66283584 7.1e-06 67_[+3]_12 chr13:51857687-51857787 7.8e-06 72_[+3]_7 chr14:83730850-83730950 9.5e-06 2_[-3]_77 chrX:15927917-15928017 9.5e-06 51_[-3]_28 chr19:38461672-38461772 1e-05 55_[-3]_24 chr3:58947717-58947817 1.1e-05 20_[-3]_59 chr5:75407706-75407806 1.2e-05 3_[-3]_76 chr1:156345932-156346032 1.2e-05 1_[+3]_78 chr2:131094587-131094687 1.4e-05 8_[+3]_71 chr12:114841710-11484181 1.5e-05 14_[+3]_65 chr12:67731407-67731507 1.8e-05 12_[+3]_67 chr13:61253502-61253602 1.9e-05 6_[-3]_73 chr7:3809369-3809469 2.3e-05 20_[-3]_59 chr2:15827507-15827607 2.3e-05 46_[-3]_33 chr1:176866595-176866695 2.3e-05 54_[+3]_25 chr15:42676918-42677018 2.7e-05 74_[-3]_5 chr1:91749355-91749455 3.2e-05 63_[-3]_16 chr7:84386993-84387093 3.2e-05 2_[+3]_77 chr3:42605241-42605341 3.5e-05 48_[-3]_31 chr5:43595789-43595889 4.1e-05 70_[+3]_9 chr5:14236945-14237045 5.2e-05 74_[-3]_5 chrX:9141507-9141607 0.0001 58_[+3]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARAMAGAAARARRAADRMAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AARAMAGAAARARRAADRMAA width=21 seqs=70 chr19:55641586-55641686 ( 16) AAGAAAGAAAGAAAAAGAAAA 1 chr12:10051870-10051970 ( 67) AAGAAAGGAAAAAGAAGGCAT 1 chr2:135771405-135771505 ( 4) AATAAAGAAAGAGGAAAAAAT 1 chr6:14970392-14970492 ( 79) AACACAGAGAGAAGCAAGAAA 1 chr1:55279356-55279456 ( 52) GAAAAAGAGAGAAAAAGGAAT 1 chr17:13122813-13122913 ( 46) TAGACAGAATGAAGAAGGCAA 1 chrX:124338165-124338265 ( 48) GGAAAAGGAGAAAAAAAAAAA 1 chr2:8425177-8425277 ( 24) GGAAAAGAAAGAGAAATGAGA 1 chr4:103221146-103221246 ( 36) TAAAAAGGAAGATGTAGGAAA 1 chr11:133727154-13372725 ( 80) AGGCAAGAAAAATAAATGAAA 1 chr7:91068680-91068780 ( 71) GGCCCAGAAAGAAACATAAAA 1 chr20:5097385-5097485 ( 55) AAAATAGAAAGAACATGGCAA 1 chr12:57756471-57756571 ( 78) AAAAAATAAAATAAAATAAAA 1 chr4:174963935-174964035 ( 7) GACAGAGGAAGAAGAAAACTA 1 chr11:36175183-36175283 ( 31) AACAAAGGAGAAGGGAGGAAT 1 chr5:44220548-44220648 ( 70) GGGACAGAGAGAGACAGAATA 1 chr1:231615857-231615957 ( 21) CAGCCAGAAAAAAGAACAAAA 1 chr2:167620869-167620969 ( 45) AAAACAGGAAGAATGAGAAAA 1 chr3:7793791-7793891 ( 4) AGAAATGAAAGATCCAGGAAA 1 chr10:126154777-12615487 ( 39) AACACAGCAGGAGAAATACAT 1 chr4:103133030-103133130 ( 71) AAGGAAGGAGGAAGCATAAAG 1 chr15:52403459-52403559 ( 55) AAAAAAGAAAAAGGTCTAAAT 1 chr1:95391277-95391377 ( 38) AGAACAGCAGAAAGGAGACAA 1 chrX:153113870-153113970 ( 11) CGGAGAGAAAGAAAAACGCAG 1 chr12:90342785-90342885 ( 28) AAAACATAAAGAAGAGGACAA 1 chr13:56741640-56741740 ( 43) AGAACAGGAAAATGAGGGCAA 1 chr11:41408323-41408423 ( 36) AATAAAGACAAAAGAATAAAG 1 chr2:181615714-181615814 ( 12) AATAGAGAAAGAGCTAGAAGA 1 chr15:38117948-38118048 ( 12) AGGAAAGAAAATACTAAAATA 1 chr3:183852512-183852612 ( 76) AATAGAGAAGGTGGCAGGCAT 1 chr19:12377507-12377607 ( 73) CCAAGAGGAAGAAGAAAGAAA 1 chr6:118722719-118722819 ( 8) AACACAGCAAAATGAAGTAAA 1 chr3:237093-237193 ( 65) AAGATAGAATATTAAATAAAA 1 chr5:17826683-17826783 ( 8) AACACAGGAACAGAAAAATAA 1 chr3:59623120-59623220 ( 7) AGGACAGAAAGAACAAGAGTG 1 chr6:135354807-135354907 ( 17) ATAAAAGAAGGTAACACAATA 1 chr20:10287011-10287111 ( 28) GAGAGAAAATGAAAAATGAAA 1 chr6:102699580-102699680 ( 64) AGTACAGACAATAAAAAAAAA 1 chr1:22032956-22033056 ( 75) GAAAGAGAATGAAGCAATCAA 1 chr12:23208044-23208144 ( 11) GTGGGAGAAAGAGCCAAGAAA 1 chr10:16483824-16483924 ( 8) GGAACAGGAAAAAAAAAAAGG 1 chr10:36891643-36891743 ( 59) GAAAAAGAGAGAGATTTACAA 1 chr18:25828733-25828833 ( 49) ATTACAGGAGGAAGTATGAAT 1 chr8:121405399-121405499 ( 27) AAGACATGAAAAACAAGATAA 1 chr10:129557988-12955808 ( 31) CAGCAAGAAAAAGCTAAGAAA 1 chr20:42486663-42486763 ( 79) GATAAAGGATGTAAAACACAA 1 chr2:192770130-192770230 ( 24) AGCATAGAAGAAAGCACAATA 1 chr11:110813969-11081406 ( 34) TCAAAAGGAAGAGGAATAATA 1 chr12:66283484-66283584 ( 68) ATGAATGAAAGAGCCAGGCAG 1 chr13:51857687-51857787 ( 73) TAGGAAGAAGGAGAAAAATAA 1 chr14:83730850-83730950 ( 3) ATAACAGAAAAAAATATCAAG 1 chrX:15927917-15928017 ( 52) AGAGAAGAGGAAGAAAGGCAT 1 chr19:38461672-38461772 ( 56) AAAAAACAAACAAACAAACAA 1 chr3:58947717-58947817 ( 21) AAACTAGAAAGAGAACAGCAA 1 chr5:75407706-75407806 ( 4) AAGAAAGGAAATGGGTGGCAT 1 chr1:156345932-156346032 ( 2) TAGAAAGAAACTAAAAAGTAA 1 chr2:131094587-131094687 ( 9) TTGAAAGAAAAAAATATACAC 1 chr12:114841710-11484181 ( 15) GACAGAGAGAGAACGAGAGAA 1 chr12:67731407-67731507 ( 13) ATAAAAGAAAGAGGTTTAATT 1 chr13:61253502-61253602 ( 7) TACATAGAAAATTGCAGAAAT 1 chr7:3809369-3809469 ( 21) AGGACTGGAGGAAGATCGCAA 1 chr2:15827507-15827607 ( 47) AGAAGAGGATGAGACACAGAT 1 chr1:176866595-176866695 ( 55) AGGAAAAAAAAATGGATAAAT 1 chr15:42676918-42677018 ( 75) AAGAAAGACGATACAGTGAAA 1 chr1:91749355-91749455 ( 64) AAAAGTGAAAGTAATACTAAA 1 chr7:84386993-84387093 ( 3) GTGAGAGAAAGAAACCACAAA 1 chr3:42605241-42605341 ( 49) AAGGAAGCGGAAGAAAGACAG 1 chr5:43595789-43595889 ( 71) AAAAGAGAATGTTACGTAAAT 1 chr5:14236945-14237045 ( 75) ATCACAGAGTGTAACAGGAGA 1 chrX:9141507-9141607 ( 59) TACACAGCAAAAGAAACGATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARAMAGAAARARRAADRMAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 10.2421 E= 1.1e-019 118 -197 -16 -127 108 -297 20 -110 43 -38 68 -147 163 -164 -164 -1277 68 43 -27 -195 177 -1277 -1277 -227 -327 -396 203 -269 128 -164 20 -1277 161 -238 -97 -1277 131 -1277 -16 -127 48 -238 135 -1277 153 -1277 -1277 -47 101 -1277 49 -110 72 -51 73 -427 89 12 -138 -82 158 -238 -197 -195 -19 -80 68 -3 97 -297 79 -269 112 43 -238 -227 156 -1277 -197 -110 122 -297 -97 -37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARAMAGAAARARRAADRMAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 70 E= 1.1e-019 0.628571 0.057143 0.200000 0.114286 0.585714 0.028571 0.257143 0.128571 0.371429 0.171429 0.357143 0.100000 0.857143 0.071429 0.071429 0.000000 0.442857 0.300000 0.185714 0.071429 0.942857 0.000000 0.000000 0.057143 0.028571 0.014286 0.914286 0.042857 0.671429 0.071429 0.257143 0.000000 0.842857 0.042857 0.114286 0.000000 0.685714 0.000000 0.200000 0.114286 0.385714 0.042857 0.571429 0.000000 0.800000 0.000000 0.000000 0.200000 0.557143 0.000000 0.314286 0.128571 0.457143 0.157143 0.371429 0.014286 0.514286 0.242857 0.085714 0.157143 0.828571 0.042857 0.057143 0.071429 0.242857 0.128571 0.357143 0.271429 0.542857 0.028571 0.385714 0.042857 0.600000 0.300000 0.042857 0.057143 0.814286 0.000000 0.057143 0.128571 0.642857 0.028571 0.114286 0.214286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARAMAGAAARARRAADRMAA MEME-3 regular expression -------------------------------------------------------------------------------- [AG][AG][AG]A[AC]AG[AG]A[AG][GA][AT][AG][AG][AC]A[GTA][AG][AC]A[AT] -------------------------------------------------------------------------------- Time 894.02 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:8470651-8470751 3.30e-01 100 chr20:42486663-42486763 9.57e-03 78_[-3(5.87e-06)]_1 chr6:81684358-81684458 5.10e-01 100 chr16:63917056-63917156 9.06e-01 100 chr2:714363-714463 3.47e-01 100 chr10:103891961-10389206 1.65e-01 100 chr12:66283484-66283584 5.58e-03 67_[+3(7.13e-06)]_12 chrX:15927917-15928017 1.28e-03 51_[-3(9.48e-06)]_28 chr5:38686713-38686813 7.53e-01 100 chr17:46755833-46755933 9.09e-04 13_[-2(1.34e-07)]_7_[-2(8.46e-08)]_\ 22 chr17:12369929-12370029 6.93e-01 100 chr2:98386983-98387083 1.05e-03 22_[-1(7.49e-07)]_63 chr1:205417789-205417889 2.21e-01 100 chr11:124891329-12489142 6.82e-01 100 chr9:116366302-116366402 3.26e-01 100 chr1:216896729-216896829 2.11e-05 59_[-2(7.53e-08)]_12 chr3:12826676-12826776 1.34e-02 48_[+1(3.26e-05)]_37 chr13:36060543-36060643 1.92e-01 100 chr6:21935916-21936016 2.17e-03 78_[-1(6.69e-06)]_7 chr12:114299658-11429975 9.28e-03 8_[+1(1.92e-06)]_77 chr3:38578156-38578256 8.86e-03 75_[-1(5.42e-06)]_10 chr13:24173763-24173863 3.13e-03 15_[-1(4.82e-06)]_70 chr10:117545714-11754581 8.10e-01 100 chr2:98508183-98508283 1.71e-01 [+1(8.95e-05)]_85 chr8:69590484-69590584 6.00e-01 100 chr16:73803683-73803783 3.77e-01 100 chr7:84386993-84387093 1.95e-02 2_[+3(3.23e-05)]_77 chr3:150129111-150129211 2.17e-01 100 chr18:31902718-31902818 3.29e-01 100 chr8:106974177-106974277 4.18e-01 100 chr4:69984374-69984474 9.93e-01 100 chr13:65104108-65104208 2.18e-01 100 chr9:16154597-16154697 7.47e-05 30_[-2(8.46e-08)]_41 chr10:129557988-12955808 8.69e-03 30_[-3(5.87e-06)]_49 chr1:176866595-176866695 6.96e-02 54_[+3(2.31e-05)]_25 chr7:66395273-66395373 6.75e-01 100 chr1:183041155-183041255 2.80e-01 100 chr5:40309127-40309227 2.13e-01 100 chr15:62184442-62184542 2.41e-02 51_[-1(4.17e-05)]_34 chr4:101198026-101198126 1.64e-01 100 chr19:38461672-38461772 2.10e-02 43_[-3(1.04e-05)]_36 chr2:167620869-167620969 1.67e-03 44_[-3(9.56e-07)]_35 chr16:11312527-11312627 6.50e-01 100 chr1:95983980-95984080 1.63e-03 31_[+1(2.11e-05)]_[-3(7.09e-05)]_33 chr4:139072995-139073095 6.08e-01 100 chr4:88817339-88817439 7.77e-01 100 chr6:102699580-102699680 1.87e-03 63_[+3(4.82e-06)]_16 chr6:28949871-28949971 4.10e-02 100 chr16:23590620-23590720 5.93e-01 100 chr9:94627466-94627566 1.34e-02 10_[-2(7.17e-06)]_61 chr4:23335987-23336087 6.63e-03 100 chr12:14667240-14667340 4.88e-01 100 chr7:37064952-37065052 9.34e-02 64_[+1(6.17e-05)]_21 chr4:77061085-77061185 1.36e-01 100 chr17:73110165-73110265 1.44e-02 7_[-2(1.10e-05)]_64 chr2:71503721-71503821 1.89e-02 41_[-2(3.51e-06)]_30 chr2:121345159-121345259 6.06e-07 41_[-2(4.72e-11)]_[-2(3.15e-05)]_1 chr14:83730850-83730950 1.66e-02 2_[-3(9.48e-06)]_77 chr8:88244605-88244705 4.30e-02 85_[+1(7.75e-05)] chr14:56586729-56586829 2.35e-01 100 chr22:40749367-40749467 9.14e-01 100 chr4:10456843-10456943 8.60e-06 55_[+1(1.42e-08)]_30 chr2:83593435-83593535 9.31e-01 100 chr2:187998497-187998597 3.78e-01 100 chr13:101871957-10187205 7.34e-01 100 chr1:151879961-151880061 3.28e-01 100 chr15:26814802-26814902 8.48e-01 100 chr4:94293679-94293779 1.70e-01 100 chr5:67318609-67318709 2.36e-02 23_[+1(6.06e-06)]_62 chr4:170335666-170335766 9.64e-01 100 chr3:182550329-182550429 5.52e-02 100 chr17:7080882-7080982 4.28e-03 3_[-2(9.52e-05)]_38_[+3(4.46e-05)]_\ 9 chr2:19718033-19718133 2.67e-01 100 chr2:43087766-43087866 3.68e-01 100 chr4:136439919-136440019 5.40e-01 100 chr8:82512568-82512668 2.33e-03 29_[+1(8.45e-07)]_56 chr12:87305160-87305260 2.05e-01 100 chr10:10236873-10236973 8.60e-01 100 chr11:41408323-41408423 6.26e-03 35_[-3(2.10e-06)]_44 chr2:84171216-84171316 3.29e-01 100 chr14:73608954-73609054 3.95e-01 100 chr9:120578611-120578711 1.77e-02 9_[+1(2.75e-05)]_76 chr13:71344495-71344595 1.97e-02 3_[+1(3.53e-05)]_82 chr6:166093150-166093250 3.06e-01 100 chr16:72319278-72319378 2.89e-02 81_[+1(1.77e-05)]_4 chr3:131042074-131042174 2.59e-02 64_[-1(2.75e-05)]_21 chr9:102622872-102622972 1.07e-01 100 chr3:94394656-94394756 2.17e-01 100 chr8:121405399-121405499 1.51e-03 26_[-3(5.87e-06)]_53 chr1:75460500-75460600 1.64e-01 100 chr14:103984818-10398491 4.93e-02 25_[-2(1.96e-05)]_46 chr2:144335174-144335274 5.95e-01 100 chr8:20326042-20326142 1.09e-01 100 chr16:53420867-53420967 5.49e-02 100 chr6:57388599-57388699 1.27e-01 44_[-3(8.22e-05)]_35 chr16:11276162-11276262 6.48e-03 69_[-2(9.14e-07)]_2 chr8:72555977-72556077 6.25e-01 100 chr3:151186113-151186213 9.44e-01 100 chrX:124338165-124338265 7.63e-04 47_[-3(1.41e-07)]_32 chr18:25828733-25828833 3.24e-03 48_[+3(5.87e-06)]_31 chr12:90342785-90342885 7.37e-04 27_[-3(1.69e-06)]_52 chr2:25312882-25312982 2.41e-02 71_[+1(9.07e-06)]_14 chr9:139466610-139466710 2.02e-01 100 chr4:112571363-112571463 1.59e-01 46_[-1(7.19e-05)]_39 chr2:79099525-79099625 7.20e-01 100 chr9:90380261-90380361 8.86e-01 100 chr17:17394319-17394419 1.13e-01 53_[-2(5.35e-05)]_18 chrX:93330313-93330413 1.34e-01 100 chr4:111332925-111333025 1.97e-01 100 chr6:32905620-32905720 8.23e-01 100 chr4:135481881-135481981 2.00e-01 100 chr11:36175183-36175283 3.60e-04 30_[+3(8.50e-07)]_49 chr12:57756471-57756571 1.23e-03 77_[-3(7.55e-07)]_2 chr13:24430525-24430625 1.45e-02 48_[-1(7.38e-06)]_37 chr1:180251846-180251946 2.86e-01 100 chrY:14915046-14915146 1.22e-01 100 chr7:145794189-145794289 5.88e-01 100 chr3:59623120-59623220 9.78e-03 6_[-3(3.94e-06)]_73 chr11:133326949-13332704 1.22e-01 100 chr7:118297686-118297786 5.77e-02 17_[-1(8.95e-05)]_68 chr1:54745409-54745509 6.91e-02 100 chr4:96720010-96720110 4.31e-01 100 chr17:13913367-13913467 1.49e-02 57_[+1(4.82e-06)]_28 chrX:9141507-9141607 9.57e-02 100 chr12:122751032-12275113 7.02e-03 100 chr14:50049475-50049575 1.47e-01 8_[+1(8.33e-05)]_77 chr8:129621303-129621403 1.16e-01 100 chr5:124938283-124938383 1.69e-01 100 chr7:75230929-75231029 6.32e-04 52_[+1(1.13e-07)]_33 chr19:49222237-49222337 2.55e-03 16_[+2(3.84e-06)]_11_[+2(3.23e-07)]_\ 15 chr14:69589968-69590068 3.08e-01 100 chr19:12377507-12377607 1.78e-03 72_[-3(3.56e-06)]_7 chr3:114075037-114075137 9.18e-04 55_[+1(2.16e-06)]_30 chr22:40726713-40726813 4.82e-01 100 chr9:90684604-90684704 2.07e-02 22_[-1(3.84e-05)]_63 chr4:87729806-87729906 6.27e-01 100 chr5:74688947-74689047 8.64e-01 100 chr10:120864373-12086447 6.00e-02 39_[+1(3.84e-05)]_46 chr14:105035873-10503597 9.86e-01 100 chr2:15827507-15827607 3.45e-02 25_[-3(7.64e-05)]_[-3(2.31e-05)]_33 chr2:131094587-131094687 1.37e-04 8_[+3(1.37e-05)]_4_[+3(6.09e-05)]_\ 13_[+2(1.30e-05)]_4 chr11:68039171-68039271 4.75e-03 3_[-2(7.70e-05)]_34_[+2(6.57e-06)]_\ 5 chr2:168878393-168878493 7.28e-02 100 chr7:17337880-17337980 2.04e-01 100 chr18:57534541-57534641 4.21e-03 56_[+1(4.35e-06)]_29 chr4:73122804-73122904 3.88e-01 100 chr13:56741640-56741740 5.70e-03 42_[-3(1.88e-06)]_37 chr1:91631748-91631848 2.68e-01 100 chr20:24663047-24663147 5.17e-02 100 chr15:68129655-68129755 5.45e-01 100 chr5:137904477-137904577 8.84e-01 100 chr15:42676918-42677018 6.25e-05 52_[+1(8.45e-07)]_7_[-3(2.74e-05)]_\ 5 chr4:189511962-189512062 9.70e-01 100 chr3:4110680-4110780 1.68e-02 36_[+1(4.17e-05)]_49 chr16:24794875-24794975 2.33e-01 100 chr11:38002450-38002550 5.21e-01 100 chr13:61253502-61253602 2.80e-02 6_[-3(1.95e-05)]_73 chr17:2187827-2187927 5.21e-04 13_[-3(2.12e-05)]_66 chr8:87289278-87289378 8.07e-04 51_[-1(4.72e-07)]_34 chr22:45203225-45203325 9.99e-04 45_[-1(2.11e-05)]_40 chr15:48732446-48732546 5.34e-01 100 chr4:107033024-107033124 3.36e-01 100 chr11:92245081-92245181 1.27e-02 19_[+1(1.10e-05)]_66 chr12:42615445-42615545 4.43e-01 100 chr3:28021782-28021882 2.91e-01 100 chr2:228487753-228487853 8.86e-01 100 chr3:183852512-183852612 1.54e-02 75_[-3(3.21e-06)]_4 chr1:55279356-55279456 4.70e-04 51_[-3(6.86e-08)]_28 chr18:31583787-31583887 6.56e-02 100 chr6:156343900-156344000 1.36e-01 100 chr17:21212537-21212637 8.53e-03 71_[+2(3.84e-06)] chr6:168533732-168533832 5.60e-01 100 chr20:49923355-49923455 7.35e-03 39_[+2(1.12e-06)]_32 chr5:13729190-13729290 5.08e-01 100 chr15:26897217-26897317 6.11e-01 100 chr5:70751944-70752044 1.00e+00 100 chr17:58172440-58172540 8.38e-01 100 chr5:31637533-31637633 5.45e-03 59_[+1(1.47e-05)]_26 chr17:40555376-40555476 2.68e-01 100 chr11:615700-615800 1.82e-06 13_[-2(2.10e-10)]_[-2(4.61e-05)]_29 chr3:13342995-13343095 4.96e-02 100 chrX:153087772-153087872 3.96e-01 100 chr11:132054114-13205421 2.60e-01 100 chr14:89118923-89119023 2.24e-02 68_[-3(1.78e-05)]_11 chrX:119274223-119274323 5.53e-03 15_[-1(3.11e-06)]_70 chr7:133140073-133140173 1.02e-02 1_[+2(2.13e-05)]_70 chr18:59452978-59453078 6.95e-01 100 chr6:138873709-138873809 4.81e-01 100 chr17:11109115-11109215 3.46e-01 100 chr22:34291583-34291683 8.88e-01 100 chr2:2127069-2127169 4.50e-01 100 chr13:60375490-60375590 3.86e-01 100 chr2:65358061-65358161 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chr2:22099563-22099663 2.11e-01 100 chr7:54600970-54601070 9.71e-02 100 chr4:103133030-103133130 2.20e-03 70_[-3(1.51e-06)]_9 chr11:60609440-60609540 2.33e-02 45_[+2(4.61e-06)]_26 chr15:40085262-40085362 4.75e-01 100 chr7:30245039-30245139 8.62e-01 100 chr6:138201146-138201246 6.57e-01 100 chr3:181578163-181578263 4.63e-01 100 chr1:197069284-197069384 8.42e-01 100 chr3:185825402-185825502 4.60e-04 62_[-2(3.68e-08)]_9 chr7:111238221-111238321 1.38e-01 100 chr7:33393942-33394042 5.11e-01 100 chr8:13863631-13863731 9.17e-02 78_[-1(7.75e-05)]_7 chr7:82073582-82073682 8.41e-03 1_[+1(3.53e-05)]_84 chr15:37675566-37675666 3.45e-01 100 chr3:27114979-27115079 9.15e-01 100 chr14:30630050-30630150 6.49e-01 100 chr18:7923242-7923342 7.65e-03 67_[+2(2.42e-06)]_4 chr10:99868627-99868727 1.74e-01 100 chr14:22642412-22642512 4.25e-01 100 chr6:135354807-135354907 3.62e-03 16_[+3(4.36e-06)]_63 chr5:38660428-38660528 1.07e-03 31_[+1(5.40e-07)]_54 chr2:90117153-90117253 1.08e-03 34_[+1(1.67e-07)]_51 chr2:233544168-233544268 3.53e-01 100 chr17:49027593-49027693 3.08e-01 100 chr15:38833039-38833139 9.94e-01 100 chr6:24321781-24321881 1.38e-03 78_[-1(2.37e-07)]_7 chr20:34961212-34961312 1.24e-03 10_[+1(4.35e-06)]_75 chr6:46431729-46431829 9.04e-02 100 chr13:95359560-95359660 6.24e-04 28_[-2(6.69e-08)]_12_[+2(8.88e-05)]_\ 2 chr5:54701916-54702016 5.85e-01 100 chr10:13297310-13297410 6.32e-01 100 chr15:49524610-49524710 7.82e-03 21_[-1(2.44e-06)]_64 chr9:102582495-102582595 3.09e-01 100 chr1:164628902-164629002 2.41e-01 100 chr10:121510247-12151034 3.49e-01 100 chr2:106460498-106460598 6.99e-01 100 chr5:120698814-120698914 1.03e-01 26_[+3(7.09e-05)]_53 chr20:709262-709362 5.14e-02 25_[+2(1.42e-05)]_46 chr13:30911130-30911230 1.61e-03 55_[-1(6.46e-07)]_30 chr5:123337385-123337485 5.94e-01 100 chr11:14354708-14354808 8.79e-01 100 chr2:10849891-10849991 8.88e-01 100 chr5:75407706-75407806 4.20e-07 3_[-3(1.25e-05)]_18_[+1(5.58e-09)]_\ 43 chr11:113258744-11325884 2.56e-01 100 chr11:133727154-13372725 1.67e-04 79_[-3(4.09e-07)] chr14:66797068-66797168 1.43e-02 17_[-1(2.44e-06)]_53_[-1(6.06e-06)] chr18:62090214-62090314 5.14e-01 100 chr18:22133642-22133742 9.99e-01 100 chr11:11196855-11196955 9.95e-01 100 chr2:205166653-205166753 8.87e-01 100 chr1:22032956-22033056 3.28e-03 74_[+3(5.32e-06)]_5 chr4:95849546-95849646 6.41e-02 100 chr1:93685183-93685283 8.32e-01 100 chr7:154730472-154730572 5.44e-01 100 chr5:44220548-44220648 3.52e-03 69_[+3(9.56e-07)]_10 chr2:142889163-142889263 7.06e-01 100 chr13:78167320-78167420 3.02e-01 100 chr5:27472443-27472543 8.63e-01 100 chr2:140023869-140023969 9.68e-01 100 chr2:181615714-181615814 1.30e-02 11_[-3(2.34e-06)]_68 chr6:10415479-10415579 1.04e-04 13_[+1(3.26e-05)]_24_[-2(1.50e-06)]_\ 19 chr5:120069829-120069929 1.22e-01 100 chr12:80045645-80045745 5.66e-01 100 chr11:12884658-12884758 8.19e-01 100 chr21:45552943-45553043 8.24e-04 44_[+2(1.19e-07)]_27 chr17:8129501-8129601 3.59e-01 100 chr4:779187-779287 1.08e-02 58_[-1(1.93e-05)]_27 chr7:38596452-38596552 2.81e-02 42_[+3(4.83e-05)]_37 chr5:150997417-150997517 7.76e-01 100 chr9:108175854-108175954 4.31e-01 100 chr12:67731407-67731507 9.68e-03 12_[+3(1.78e-05)]_46_[+3(1.04e-05)] chrX:39638349-39638449 4.52e-02 100 chr1:29503275-29503375 7.21e-01 100 chr22:35109450-35109550 5.89e-01 100 chr8:26008210-26008310 6.27e-01 100 chr5:143988991-143989091 6.65e-01 100 chr10:24078293-24078393 5.25e-01 100 chr20:22215172-22215272 3.50e-01 100 chr9:2079513-2079613 5.37e-01 100 chr14:23282252-23282352 4.63e-04 26_[+1(3.11e-06)]_59 chr14:58938651-58938751 3.30e-02 12_[-1(1.22e-05)]_73 chr2:176953268-176953368 5.07e-01 100 chr2:119913347-119913447 3.36e-02 46_[-2(2.30e-05)]_25 chr4:90871112-90871212 1.46e-02 24_[+1(2.53e-05)]_61 chr17:64196838-64196938 5.36e-02 100 chr1:10003407-10003507 4.88e-02 54_[+2(1.81e-05)]_17 chr2:22917838-22917938 8.65e-05 62_[+1(3.53e-08)]_23 chr17:37551645-37551745 1.25e-02 6_[-1(3.53e-05)]_79 chr14:24867563-24867663 7.05e-02 100 chr14:64527594-64527694 6.77e-03 46_[+2(1.10e-05)]_25 chr12:106323995-10632409 3.34e-01 100 chr10:114895379-11489547 2.76e-01 100 chr11:114188591-11418869 6.76e-01 100 chr1:46509517-46509617 1.05e-03 52_[-1(1.13e-07)]_33 chr6:125505109-125505209 7.33e-01 100 chr3:121362407-121362507 7.41e-01 100 chr13:22274414-22274514 3.35e-02 11_[-1(3.84e-05)]_14_[+1(1.10e-05)]_\ 45 chr6:13535622-13535722 1.65e-03 33_[-1(5.42e-06)]_52 chr12:46121273-46121373 1.21e-06 9_[+2(7.86e-11)]_62 chr5:5182758-5182858 4.87e-01 100 chr5:33833370-33833470 2.98e-01 100 chr2:192770130-192770230 2.65e-02 23_[-3(7.13e-06)]_56 chr20:33733033-33733133 6.20e-01 100 chr10:106784895-10678499 4.25e-01 100 chr17:49550992-49551092 1.68e-01 100 chr6:69783446-69783546 4.80e-01 100 chr1:88171021-88171121 5.35e-01 100 chr12:63023212-63023312 5.85e-03 100 chr1:222030547-222030647 1.36e-01 100 chr12:45249114-45249214 5.75e-01 100 chr3:7793791-7793891 3.52e-06 3_[+3(1.35e-06)]_3_[-1(1.68e-06)]_\ 58 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: surya.stanford.edu ********************************************************************************