# DREME 4.12.0 # command: dreme -v 1 -oc seqnotcut_memechip_out/dreme_out -png -dna -p seqnotcut_memechip_out/seqs-centered -n seqnotcut_memechip_out/seqs-shuffled # positives: 31486 from seqnotcut_memechip_out/seqs-centered (Mon Oct 21 17:10:21 PDT 2019) # negatives: 31486 from seqnotcut_memechip_out/seqs-shuffled (Mon Oct 21 17:10:21 PDT 2019) # host: surya.stanford.edu # when: Mon Oct 21 17:25:22 PDT 2019 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.273 C 0.226 G 0.226 T 0.275 MOTIF ATGYADAT DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ATGYADAT ATHTRCAT 2616 774 2.9e-244 1.3e-239 # ATGCAAAT ATTTGCAT 1016 206 1.4e-131 6.6e-127 # ATGTAAAT ATTTACAT 532 151 2.0e-051 9.1e-047 # ATGCAGAT ATCTGCAT 492 137 1.3e-048 5.9e-044 # ATGCATAT ATATGCAT 302 113 2.1e-021 9.6e-017 # ATGTAGAT ATCTACAT 199 85 4.8e-012 2.2e-007 # ATGTATAT ATATACAT 187 102 3.1e-007 1.4e-002 letter-probability matrix: alength= 4 w= 8 nsites= 2770 E= 1.3e-239 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.664260 0.000000 0.335740 1.000000 0.000000 0.000000 0.000000 0.568231 0.000000 0.249097 0.182671 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF MATRACAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST MATRACAA TTGTYATK 1928 656 3.5e-150 1.6e-145 # CATAACAA TTGTTATG 598 130 1.4e-073 6.2e-069 # CATGACAA TTGTCATG 555 136 8.2e-062 3.7e-057 # AATAACAA TTGTTATT 452 190 4.2e-026 1.9e-021 # AATGACAA TTGTCATT 357 205 6.1e-011 2.8e-006 letter-probability matrix: alength= 4 w= 8 nsites= 1978 E= 1.6e-145 0.413043 0.586957 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.535389 0.000000 0.464611 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CMCAG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CMCAG CTGKG 16106 12865 1.6e-148 7.1e-144 # CACAG CTGTG 8995 6802 8.1e-091 3.7e-086 # CCCAG CTGGG 9874 7850 2.8e-072 1.3e-067 letter-probability matrix: alength= 4 w= 5 nsites= 23216 E= 7.1e-144 0.000000 1.000000 0.000000 0.000000 0.460157 0.539843 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF DAAATR DREME-4 # Word RC Word Pos Neg P-value E-value # BEST DAAATR YATTTH 13792 10829 8.4e-130 3.8e-125 # AAAATA TATTTT 4021 2801 1.3e-055 5.7e-051 # TAAATA TATTTA 2575 1730 4.7e-041 2.1e-036 # GAAATG CATTTC 2855 2105 6.3e-029 2.8e-024 # GAAATA TATTTC 2307 1662 1.8e-026 8.1e-022 # AAAATG CATTTT 3890 3198 1.4e-018 6.3e-014 # TAAATG CATTTA 2533 1973 2.5e-018 1.1e-013 letter-probability matrix: alength= 4 w= 6 nsites= 19062 E= 3.8e-125 0.446648 0.000000 0.279929 0.273424 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.491134 0.000000 0.508866 0.000000 MOTIF AGRRAR DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AGRRAR YTYYCT 17771 15426 1.8e-078 7.8e-074 # AGGAAA TTTCCT 3343 2446 1.7e-035 7.3e-031 # AGAGAA TTCTCT 3617 2773 4.0e-029 1.8e-024 # AGAAAA TTTTCT 4096 3317 3.0e-022 1.3e-017 # AGAAAG CTTTCT 3820 3069 4.7e-022 2.1e-017 # AGGAAG CTTCCT 3299 2692 8.8e-017 3.9e-012 # AGGGAG CTCCCT 3123 2613 8.7e-013 3.8e-008 # AGGGAA TTCCCT 2871 2412 2.2e-011 9.9e-007 # AGAGAG CTCTCT 3025 2571 1.1e-010 4.8e-006 letter-probability matrix: alength= 4 w= 6 nsites= 26868 E= 7.8e-074 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.522145 0.000000 0.477855 0.000000 0.541015 0.000000 0.458985 0.000000 1.000000 0.000000 0.000000 0.000000 0.506364 0.000000 0.493636 0.000000 MOTIF CCCCDCCC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CCCCDCCC GGGHGGGG 1007 388 2.9e-065 1.3e-060 # CCCCTCCC GGGAGGGG 416 152 6.8e-030 2.9e-025 # CCCCACCC GGGTGGGG 378 152 1.0e-023 4.5e-019 # CCCCGCCC GGGCGGGG 275 98 5.7e-021 2.5e-016 letter-probability matrix: alength= 4 w= 8 nsites= 1063 E= 1.3e-060 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.352775 0.000000 0.259643 0.387582 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CDGSAG DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CDGSAG CTSCHG 9473 7669 5.4e-059 2.3e-054 # CAGCAG CTGCTG 2908 2185 2.1e-026 8.9e-022 # CTGCAG CTGCAG 1719 1245 2.4e-019 1.0e-014 # CTGGAG CTCCAG 2792 2253 1.3e-015 5.8e-011 # CAGGAG CTCCTG 2525 2086 1.0e-011 4.3e-007 # CGGGAG CTCCCG 888 644 1.5e-010 6.5e-006 # CGGCAG CTGCCG 772 650 5.8e-004 2.5e+001 letter-probability matrix: alength= 4 w= 6 nsites= 11818 E= 2.3e-054 0.000000 1.000000 0.000000 0.000000 0.466407 0.000000 0.144695 0.388898 0.000000 0.000000 1.000000 0.000000 0.000000 0.463361 0.536639 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ATGCGCAT DREME-8 # Word RC Word Pos Neg P-value E-value # BEST ATGCGCAT ATGCGCAT 181 2 1.1e-051 4.5e-047 # ATGCGCAT ATGCGCAT 181 2 1.1e-051 4.5e-047 letter-probability matrix: alength= 4 w= 8 nsites= 181 E= 4.5e-047 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF ATGNTAAT DREME-9 # Word RC Word Pos Neg P-value E-value # BEST ATGNTAAT ATTANCAT 884 419 1.1e-039 4.8e-035 # ATGCTAAT ATTAGCAT 316 122 2.4e-021 1.0e-016 # ATGTTAAT ATTAACAT 272 113 1.2e-016 5.3e-012 # ATGATAAT ATTATCAT 179 103 3.4e-006 1.4e-001 # ATGGTAAT ATTACCAT 129 87 2.5e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 899 E= 4.8e-035 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.199110 0.352614 0.144605 0.303671 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF ACGTRD DREME-10 # Word RC Word Pos Neg P-value E-value # BEST ACGTRD HYACGT 1592 962 1.2e-037 5.2e-033 # ACGTGG CCACGT 527 263 1.0e-021 4.3e-017 # ACGTGT ACACGT 382 180 3.7e-018 1.6e-013 # ACGTGA TCACGT 393 237 2.2e-010 9.5e-006 # ACGTAG CTACGT 209 142 2.0e-004 8.5e+000 # ACGTAA TTACGT 251 189 1.7e-003 7.4e+001 # ACGTAT ATACGT 193 142 3.0e-003 1.3e+002 letter-probability matrix: alength= 4 w= 6 nsites= 1651 E= 5.2e-033 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.325863 0.000000 0.674137 0.000000 0.336766 0.000000 0.370684 0.292550 MOTIF ACACAYAC DREME-11 # Word RC Word Pos Neg P-value E-value # BEST ACACAYAC GTRTGTGT 477 170 3.0e-035 1.3e-030 # ACACACAC GTGTGTGT 357 111 1.1e-031 4.7e-027 # ACACATAC GTATGTGT 152 71 2.9e-008 1.2e-003 letter-probability matrix: alength= 4 w= 8 nsites= 775 E= 1.3e-030 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.811613 0.000000 0.188387 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGRKGGCG DREME-12 # Word RC Word Pos Neg P-value E-value # BEST AGRKGGCG CGCCMYCT 447 162 2.2e-032 9.4e-028 # AGGGGGCG CGCCCCCT 169 66 6.2e-012 2.6e-007 # AGAGGGCG CGCCCTCT 123 50 1.3e-008 5.6e-004 # AGGTGGCG CGCCACCT 81 25 2.2e-008 9.2e-004 # AGATGGCG CGCCATCT 76 24 8.9e-008 3.7e-003 letter-probability matrix: alength= 4 w= 8 nsites= 450 E= 9.4e-028 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.442222 0.000000 0.557778 0.000000 0.000000 0.000000 0.651111 0.348889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF RCATTCCW DREME-13 # Word RC Word Pos Neg P-value E-value # BEST RCATTCCW WGGAATGY 764 400 1.3e-027 5.4e-023 # ACATTCCT AGGAATGT 210 105 1.5e-009 6.5e-005 # ACATTCCA TGGAATGT 204 104 5.9e-009 2.5e-004 # GCATTCCT AGGAATGC 183 90 8.8e-009 3.7e-004 # GCATTCCA TGGAATGC 177 103 5.5e-006 2.3e-001 letter-probability matrix: alength= 4 w= 8 nsites= 781 E= 5.4e-023 0.535211 0.000000 0.464789 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.492958 0.000000 0.000000 0.507042 MOTIF AAAAVAAA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST AAAAVAAA TTTBTTTT 1417 915 1.3e-026 5.5e-022 # AAAAAAAA TTTTTTTT 722 448 2.9e-016 1.2e-011 # AAAACAAA TTTGTTTT 607 383 3.7e-013 1.5e-008 # AAAAGAAA TTTCTTTT 165 117 2.5e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 1634 E= 5.5e-022 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.515912 0.383109 0.100979 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TATGCAVA DREME-15 # Word RC Word Pos Neg P-value E-value # BEST TATGCAVA TBTGCATA 528 253 1.0e-023 4.4e-019 # TATGCAAA TTTGCATA 282 113 3.5e-018 1.5e-013 # TATGCAGA TCTGCATA 136 76 2.2e-005 9.3e-001 # TATGCACA TGTGCATA 113 65 1.9e-004 8.2e+000 letter-probability matrix: alength= 4 w= 8 nsites= 538 E= 4.4e-019 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.529740 0.219331 0.250929 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACARAGR DREME-16 # Word RC Word Pos Neg P-value E-value # BEST ACARAGR YCTYTGT 2213 1624 4.9e-023 2.1e-018 # ACAAAGA TCTTTGT 828 573 3.0e-012 1.3e-007 # ACAAAGG CCTTTGT 743 522 1.9e-010 7.9e-006 # ACAGAGG CCTCTGT 465 379 1.6e-003 6.7e+001 # ACAGAGA TCTCTGT 236 185 7.2e-003 3.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 2298 E= 2.1e-018 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.692776 0.000000 0.307224 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.467798 0.000000 0.532202 0.000000 MOTIF CVCCRCC DREME-17 # Word RC Word Pos Neg P-value E-value # BEST CVCCRCC GGYGGBG 1724 1230 6.3e-021 2.6e-016 # CACCACC GGTGGTG 522 353 4.8e-009 2.0e-004 # CGCCGCC GGCGGCG 289 168 7.3e-009 3.1e-004 # CCCCGCC GGCGGGG 294 199 1.0e-005 4.3e-001 # CCCCACC GGTGGGG 494 379 5.0e-005 2.1e+000 # CGCCACC GGTGGCG 157 97 9.8e-005 4.1e+000 # CACCGCC GGCGGTG 186 137 3.7e-003 1.5e+002 letter-probability matrix: alength= 4 w= 7 nsites= 1876 E= 2.6e-016 0.000000 1.000000 0.000000 0.000000 0.362473 0.413113 0.224414 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600213 0.000000 0.399787 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AHTACAGG DREME-18 # Word RC Word Pos Neg P-value E-value # BEST AHTACAGG CCTGTADT 408 187 2.4e-020 1.0e-015 # ATTACAGG CCTGTAAT 217 73 4.0e-018 1.7e-013 # ACTACAGG CCTGTAGT 115 70 5.7e-004 2.4e+001 # AATACAGG CCTGTATT 76 45 3.1e-003 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 408 E= 1.0e-015 1.000000 0.000000 0.000000 0.000000 0.186275 0.281863 0.000000 0.531863 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GTTTCY DREME-19 # Word RC Word Pos Neg P-value E-value # BEST GTTTCY RGAAAC 2851 2253 1.3e-018 5.5e-014 # GTTTCT AGAAAC 1923 1549 3.6e-011 1.5e-006 # GTTTCC GGAAAC 982 742 2.5e-009 1.1e-004 letter-probability matrix: alength= 4 w= 6 nsites= 2985 E= 5.5e-014 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333668 0.000000 0.666332 MOTIF AGGCNGAG DREME-20 # Word RC Word Pos Neg P-value E-value # BEST AGGCNGAG CTCNGCCT 665 399 8.9e-017 3.7e-012 # AGGCAGAG CTCTGCCT 256 155 3.3e-007 1.4e-002 # AGGCTGAG CTCAGCCT 262 162 6.3e-007 2.6e-002 # AGGCCGAG CTCGGCCT 77 40 4.0e-004 1.7e+001 # AGGCGGAG CTCCGCCT 76 43 1.6e-003 6.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 676 E= 3.7e-012 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.380178 0.115385 0.113905 0.390533 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CACBG DREME-21 # Word RC Word Pos Neg P-value E-value # BEST CACBG CVGTG 8165 7307 1.1e-015 4.4e-011 # CACTG CAGTG 5973 5352 6.2e-011 2.6e-006 # CACGG CCGTG 1483 1322 1.0e-003 4.2e+001 # CACCG CGGTG 1313 1171 1.9e-003 8.1e+001 letter-probability matrix: alength= 4 w= 5 nsites= 9423 E= 4.4e-011 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.138279 0.158973 0.702749 0.000000 0.000000 1.000000 0.000000 MOTIF RAATR DREME-22 # Word RC Word Pos Neg P-value E-value # BEST RAATR YATTY 12538 11573 1.4e-015 5.5e-011 # GAATA TATTC 4584 4050 3.3e-010 1.3e-005 # AAATA TATTT 2252 1961 1.9e-006 7.6e-002 # GAATG CATTC 5474 5107 4.8e-005 2.0e+000 # AAATG CATTT 2765 2498 6.4e-005 2.6e+000 letter-probability matrix: alength= 4 w= 5 nsites= 16263 E= 5.5e-011 0.320359 0.000000 0.679641 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.450778 0.000000 0.549222 0.000000 MOTIF GAGACRGR DREME-23 # Word RC Word Pos Neg P-value E-value # BEST GAGACRGR YCYGTCTC 388 221 5.2e-012 2.1e-007 # GAGACAGA TCTGTCTC 151 88 2.7e-005 1.1e+000 # GAGACAGG CCTGTCTC 163 98 3.3e-005 1.3e+000 # GAGACGGA TCCGTCTC 40 18 2.7e-003 1.1e+002 # GAGACGGG CCCGTCTC 38 17 3.2e-003 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 392 E= 2.1e-007 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.801020 0.000000 0.198980 0.000000 0.000000 0.000000 1.000000 0.000000 0.487245 0.000000 0.512755 0.000000 MOTIF CYTCCC DREME-24 # Word RC Word Pos Neg P-value E-value # BEST CYTCCC GGGARG 2440 2024 5.7e-011 2.3e-006 # CCTCCC GGGAGG 1185 922 3.1e-009 1.2e-004 # CTTCCC GGGAAG 1315 1144 2.3e-004 9.3e+000 letter-probability matrix: alength= 4 w= 6 nsites= 2586 E= 2.3e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.475638 0.000000 0.524362 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CACMTGS DREME-25 # Word RC Word Pos Neg P-value E-value # BEST CACMTGS SCAKGTG 1752 1372 1.7e-012 6.6e-008 # CACCTGG CCAGGTG 462 335 3.4e-006 1.3e-001 # CACATGG CCATGTG 514 403 1.2e-004 4.9e+000 # CACATGC GCATGTG 410 327 1.2e-003 4.7e+001 # CACCTGC GCAGGTG 403 339 1.0e-002 4.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 1803 E= 6.6e-008 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.518026 0.481974 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.454798 0.545202 0.000000 MOTIF TTTTWAAA DREME-26 # Word RC Word Pos Neg P-value E-value # BEST TTTTWAAA TTTWAAAA 437 273 3.2e-010 1.3e-005 # TTTTTAAA TTTAAAAA 368 223 1.1e-009 4.4e-005 # TTTTAAAA TTTTAAAA 209 110 1.5e-008 5.9e-004 letter-probability matrix: alength= 4 w= 8 nsites= 442 E= 1.3e-005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.271493 0.000000 0.000000 0.728507 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TMTGTAA DREME-27 # Word RC Word Pos Neg P-value E-value # BEST TMTGTAA TTACAKA 798 580 1.6e-009 6.3e-005 # TATGTAA TTACATA 387 270 2.5e-006 1.0e-001 # TCTGTAA TTACAGA 415 312 6.9e-005 2.7e+000 letter-probability matrix: alength= 4 w= 7 nsites= 810 E= 6.3e-005 0.000000 0.000000 0.000000 1.000000 0.480247 0.519753 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCATYACA DREME-28 # Word RC Word Pos Neg P-value E-value # BEST GCATYACA TGTRATGC 230 119 1.3e-009 5.2e-005 # GCATCACA TGTGATGC 126 61 1.1e-006 4.4e-002 # GCATTACA TGTAATGC 104 58 1.8e-004 7.3e+000 letter-probability matrix: alength= 4 w= 8 nsites= 231 E= 5.2e-005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.545455 0.000000 0.454545 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTGGYCTC DREME-29 # Word RC Word Pos Neg P-value E-value # BEST CTGGYCTC GAGRCCAG 307 180 4.1e-009 1.6e-004 # CTGGCCTC GAGGCCAG 171 101 1.3e-005 5.0e-001 # CTGGTCTC GAGACCAG 139 79 2.8e-005 1.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 313 E= 1.6e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.552716 0.000000 0.447284 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCDGGAA DREME-30 # Word RC Word Pos Neg P-value E-value # BEST CCDGGAA TTCCHGG 751 550 9.9e-009 3.9e-004 # CCTGGAA TTCCAGG 503 375 7.7e-006 3.0e-001 # CCGGGAA TTCCCGG 100 51 4.0e-005 1.6e+000 # CCAGGAA TTCCTGG 177 132 6.0e-003 2.4e+002 letter-probability matrix: alength= 4 w= 7 nsites= 766 E= 3.9e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.218016 0.000000 0.130548 0.651436 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF KAAAACA DREME-31 # Word RC Word Pos Neg P-value E-value # BEST KAAAACA TGTTTTM 923 708 3.8e-008 1.5e-003 # GAAAACA TGTTTTC 386 277 1.2e-005 4.7e-001 # TAAAACA TGTTTTA 543 435 2.8e-004 1.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 943 E= 1.5e-003 0.000000 0.000000 0.415695 0.584305 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATAATAAW DREME-32 # Word RC Word Pos Neg P-value E-value # BEST ATAATAAW WTTATTAT 350 220 2.5e-008 9.9e-004 # ATAATAAT ATTATTAT 201 115 7.1e-007 2.8e-002 # ATAATAAA TTTATTAT 157 109 1.9e-003 7.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 359 E= 9.9e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.431755 0.000000 0.000000 0.568245 MOTIF CCACTAGR DREME-33 # Word RC Word Pos Neg P-value E-value # BEST CCACTAGR YCTAGTGG 253 149 1.1e-007 4.4e-003 # CCACTAGA TCTAGTGG 139 75 7.0e-006 2.8e-001 # CCACTAGG CCTAGTGG 114 75 2.7e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 253 E= 4.4e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.549407 0.000000 0.450593 0.000000 MOTIF ADCCCGGG DREME-34 # Word RC Word Pos Neg P-value E-value # BEST ADCCCGGG CCCGGGHT 148 72 1.6e-007 6.2e-003 # AACCCGGG CCCGGGTT 60 25 9.2e-005 3.7e+000 # AGCCCGGG CCCGGGCT 61 35 5.1e-003 2.0e+002 # ATCCCGGG CCCGGGAT 39 19 5.9e-003 2.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 148 E= 6.2e-003 1.000000 0.000000 0.000000 0.000000 0.385135 0.000000 0.398649 0.216216 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GGAATTYA DREME-35 # Word RC Word Pos Neg P-value E-value # BEST GGAATTYA TRAATTCC 242 146 5.8e-007 2.3e-002 # GGAATTCA TGAATTCC 143 89 2.3e-004 9.2e+000 # GGAATTTA TAAATTCC 101 57 2.9e-004 1.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 245 E= 2.3e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.587755 0.000000 0.412245 1.000000 0.000000 0.000000 0.000000 MOTIF AKGTGAC DREME-36 # Word RC Word Pos Neg P-value E-value # BEST AKGTGAC GTCACMT 500 359 7.2e-007 2.8e-002 # AGGTGAC GTCACCT 264 176 1.5e-005 5.9e-001 # ATGTGAC GTCACAT 238 185 5.5e-003 2.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 505 E= 2.8e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.528713 0.471287 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCCATCTC DREME-37 # Word RC Word Pos Neg P-value E-value # BEST CCCATCTC GAGATGGG 164 88 9.3e-007 3.7e-002 # CCCATCTC GAGATGGG 164 88 9.3e-007 3.7e-002 letter-probability matrix: alength= 4 w= 8 nsites= 165 E= 3.7e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ARAGGCAG DREME-38 # Word RC Word Pos Neg P-value E-value # BEST ARAGGCAG CTGCCTYT 355 240 1.2e-006 4.9e-002 # AAAGGCAG CTGCCTTT 188 120 6.1e-005 2.4e+000 # AGAGGCAG CTGCCTCT 167 120 3.2e-003 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 356 E= 4.9e-002 1.000000 0.000000 0.000000 0.000000 0.528090 0.000000 0.471910 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 5243.67 seconds