Invoking:
  getsize intersection_memechip_out/intersection.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.048795
Invoking:
  fasta-most -min 50 < intersection_memechip_out/intersection.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.124363
Invoking:
  fasta-center -dna -len 100 < intersection_memechip_out/intersection.fa 1> intersection_memechip_out/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.172287
Invoking:
  fasta-shuffle-letters intersection_memechip_out/seqs-centered intersection_memechip_out/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.081235
Invoking:
  fasta-subsample intersection_memechip_out/seqs-centered 600 -rest intersection_memechip_out/seqs-discarded -seed 1 1> intersection_memechip_out/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 1.088612
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 intersection_memechip_out/intersection.fa intersection_memechip_out/background
Finished invoke:
  name: bg  status: 0  time: 0.046648
Invoking:
  meme intersection_memechip_out/seqs-sampled -oc intersection_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile intersection_memechip_out/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 850.222778
Invoking:
  dreme -v 1 -oc intersection_memechip_out/dreme_out -png -dna -p intersection_memechip_out/seqs-centered -n intersection_memechip_out/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 140.549268
Invoking:
  centrimo -seqlen 210 -verbosity 1 -oc intersection_memechip_out/centrimo_out -bfile intersection_memechip_out/background intersection_memechip_out/intersection.fa intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.57535
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 intersection_memechip_out/combined.meme intersection_memechip_out/combined.meme 1> intersection_memechip_out/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.549419
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_1 -bgfile intersection_memechip_out/background -primary ATTTGCATAWCAAWR intersection_memechip_out/intersection.fa intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.396129
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_2 -bgfile intersection_memechip_out/background -primary GTCACCTCATTAGCATAAACTCAGGTRTGG intersection_memechip_out/intersection.fa intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.440072
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_3 -bgfile intersection_memechip_out/background -primary CTATTCTCTCTGAAGSCTGCTACCTGGAG intersection_memechip_out/intersection.fa intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.415472
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_4 -bgfile intersection_memechip_out/background -primary RRGAA intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.298829
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_5 -bgfile intersection_memechip_out/background -primary TATTCATR intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.289507
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_6 -bgfile intersection_memechip_out/background -primary ACAAWGR intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.239419
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_7 -bgfile intersection_memechip_out/background -primary BCCAGG intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.290623
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_8 -bgfile intersection_memechip_out/background -primary CCTKTGA intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.314448
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_9 -bgfile intersection_memechip_out/background -primary CAGSACC intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.287478
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_10 -bgfile intersection_memechip_out/background -primary GTGGRGA intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.296979
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_11 -bgfile intersection_memechip_out/background -primary GTTTCTAA intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 1.034628
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_12 -bgfile intersection_memechip_out/background -primary CAGCAGG intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.312982
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_1 --bgfile intersection_memechip_out/background --motif ATTTGCATAWCAAWR intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.498266
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_2 --bgfile intersection_memechip_out/background --motif GTCACCTCATTAGCATAAACTCAGGTRTGG intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.463644
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_3 --bgfile intersection_memechip_out/background --motif CTATTCTCTCTGAAGSCTGCTACCTGGAG intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.473249
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_4 --bgfile intersection_memechip_out/background --motif RRGAA intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.2824
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_5 --bgfile intersection_memechip_out/background --motif TATTCATR intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.26404
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_6 --bgfile intersection_memechip_out/background --motif ACAAWGR intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.398213
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_7 --bgfile intersection_memechip_out/background --motif BCCAGG intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.31951
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_8 --bgfile intersection_memechip_out/background --motif CCTKTGA intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.323829
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_9 --bgfile intersection_memechip_out/background --motif CAGSACC intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.31038
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_10 --bgfile intersection_memechip_out/background --motif GTGGRGA intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.414141
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_11 --bgfile intersection_memechip_out/background --motif GTTTCTAA intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.281661
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_12 --bgfile intersection_memechip_out/background --motif CAGCAGG intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.321574
Writing output
Invoking:
  meme-chip_html_to_tsv intersection_memechip_out/meme-chip.html intersection_memechip_out/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.245519
Done