Invoking: getsize cutrun_memechip_out/smooth.243.overlap.optimal.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.310221 Invoking: fasta-most -min 50 < cutrun_memechip_out/smooth.243.overlap.optimal.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.187252 Invoking: fasta-center -dna -len 100 < cutrun_memechip_out/smooth.243.overlap.optimal.fa 1> cutrun_memechip_out/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.279778 Invoking: fasta-shuffle-letters cutrun_memechip_out/seqs-centered cutrun_memechip_out/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.141435 Invoking: fasta-subsample cutrun_memechip_out/seqs-centered 600 -rest cutrun_memechip_out/seqs-discarded -seed 1 1> cutrun_memechip_out/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.177269 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/background Finished invoke: name: bg status: 0 time: 0.057491 Invoking: meme cutrun_memechip_out/seqs-sampled -oc cutrun_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile cutrun_memechip_out/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 885.876739 Invoking: dreme -v 1 -oc cutrun_memechip_out/dreme_out -png -dna -p cutrun_memechip_out/seqs-centered -n cutrun_memechip_out/seqs-shuffled Finished invoke: name: dreme status: 0 time: 541.604281 Invoking: centrimo -seqlen 243 -verbosity 1 -oc cutrun_memechip_out/centrimo_out -bfile cutrun_memechip_out/background cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.384569 Invoking: tomtom -verbosity 1 -text -thresh 0.1 cutrun_memechip_out/combined.meme cutrun_memechip_out/combined.meme 1> cutrun_memechip_out/motif_alignment.txt Finished invoke: name: align status: 0 time: 1.138477 Invoking: spamo -verbosity 1 -oc cutrun_memechip_out/spamo_out_1 -bgfile cutrun_memechip_out/background -primary ATGYWAAT cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 1.706859 Invoking: spamo -verbosity 1 -oc cutrun_memechip_out/spamo_out_2 -bgfile cutrun_memechip_out/background -primary GCTGTCCRTGGTGCTGAA cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.725755 Invoking: spamo -verbosity 1 -oc cutrun_memechip_out/spamo_out_3 -bgfile cutrun_memechip_out/background -primary DTATKCA cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 2.019174 Invoking: spamo -verbosity 1 -oc cutrun_memechip_out/spamo_out_4 -bgfile cutrun_memechip_out/background -primary GGAATKY cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 1.748998 Invoking: spamo -verbosity 1 -oc cutrun_memechip_out/spamo_out_5 -bgfile cutrun_memechip_out/background -primary RGGAAR cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 2.784664 Invoking: spamo -verbosity 1 -oc cutrun_memechip_out/spamo_out_6 -bgfile cutrun_memechip_out/background -primary ASARAGA cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 1.637449 Invoking: spamo -verbosity 1 -oc cutrun_memechip_out/spamo_out_7 -bgfile cutrun_memechip_out/background -primary ACAAADG cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 1.866693 Invoking: spamo -verbosity 1 -oc cutrun_memechip_out/spamo_out_8 -bgfile cutrun_memechip_out/background -primary CCRCCYCC cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.894447 Invoking: spamo -verbosity 1 -oc cutrun_memechip_out/spamo_out_9 -bgfile cutrun_memechip_out/background -primary ACACSTGG cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.552518 Invoking: spamo -verbosity 1 -oc cutrun_memechip_out/spamo_out_10 -bgfile cutrun_memechip_out/background -primary GAAATDC cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 1.198321 Invoking: spamo -verbosity 1 -oc cutrun_memechip_out/spamo_out_11 -bgfile cutrun_memechip_out/background -primary DTCTTTTA cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.727304 Invoking: spamo -verbosity 1 -oc cutrun_memechip_out/spamo_out_12 -bgfile cutrun_memechip_out/background -primary CCTGGAGR cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.511503 Invoking: spamo -verbosity 1 -oc cutrun_memechip_out/spamo_out_13 -bgfile cutrun_memechip_out/background -primary GCCAGGWA cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.792724 Invoking: spamo -verbosity 1 -oc cutrun_memechip_out/spamo_out_14 -bgfile cutrun_memechip_out/background -primary GACAGTTY cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.46177 Invoking: spamo -verbosity 1 -oc cutrun_memechip_out/spamo_out_15 -bgfile cutrun_memechip_out/background -primary AYATTTA cutrun_memechip_out/smooth.243.overlap.optimal.fa cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.949971 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutrun_memechip_out/fimo_out_1 --bgfile cutrun_memechip_out/background --motif ATGYWAAT cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/smooth.243.overlap.optimal.fa Finished invoke: name: fimo1 status: 0 time: 1.181628 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutrun_memechip_out/fimo_out_2 --bgfile cutrun_memechip_out/background --motif GCTGTCCRTGGTGCTGAA cutrun_memechip_out/meme_out/meme.xml cutrun_memechip_out/smooth.243.overlap.optimal.fa Finished invoke: name: fimo2 status: 0 time: 1.412918 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutrun_memechip_out/fimo_out_3 --bgfile cutrun_memechip_out/background --motif DTATKCA cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/smooth.243.overlap.optimal.fa Finished invoke: name: fimo3 status: 0 time: 2.647212 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutrun_memechip_out/fimo_out_4 --bgfile cutrun_memechip_out/background --motif GGAATKY cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/smooth.243.overlap.optimal.fa Finished invoke: name: fimo4 status: 0 time: 1.263443 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutrun_memechip_out/fimo_out_5 --bgfile cutrun_memechip_out/background --motif RGGAAR cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/smooth.243.overlap.optimal.fa Finished invoke: name: fimo5 status: 0 time: 1.004506 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutrun_memechip_out/fimo_out_6 --bgfile cutrun_memechip_out/background --motif ASARAGA cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/smooth.243.overlap.optimal.fa Finished invoke: name: fimo6 status: 0 time: 1.207302 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutrun_memechip_out/fimo_out_7 --bgfile cutrun_memechip_out/background --motif ACAAADG cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/smooth.243.overlap.optimal.fa Finished invoke: name: fimo7 status: 0 time: 1.140105 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutrun_memechip_out/fimo_out_8 --bgfile cutrun_memechip_out/background --motif CCRCCYCC cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/smooth.243.overlap.optimal.fa Finished invoke: name: fimo8 status: 0 time: 1.676323 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutrun_memechip_out/fimo_out_9 --bgfile cutrun_memechip_out/background --motif ACACSTGG cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/smooth.243.overlap.optimal.fa Finished invoke: name: fimo9 status: 0 time: 1.223483 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutrun_memechip_out/fimo_out_10 --bgfile cutrun_memechip_out/background --motif GAAATDC cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/smooth.243.overlap.optimal.fa Finished invoke: name: fimo10 status: 0 time: 1.12973 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutrun_memechip_out/fimo_out_11 --bgfile cutrun_memechip_out/background --motif DTCTTTTA cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/smooth.243.overlap.optimal.fa Finished invoke: name: fimo11 status: 0 time: 1.159108 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutrun_memechip_out/fimo_out_12 --bgfile cutrun_memechip_out/background --motif CCTGGAGR cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/smooth.243.overlap.optimal.fa Finished invoke: name: fimo12 status: 0 time: 1.19115 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutrun_memechip_out/fimo_out_13 --bgfile cutrun_memechip_out/background --motif GCCAGGWA cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/smooth.243.overlap.optimal.fa Finished invoke: name: fimo13 status: 0 time: 1.319368 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutrun_memechip_out/fimo_out_14 --bgfile cutrun_memechip_out/background --motif GACAGTTY cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/smooth.243.overlap.optimal.fa Finished invoke: name: fimo14 status: 0 time: 1.031907 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc cutrun_memechip_out/fimo_out_15 --bgfile cutrun_memechip_out/background --motif AYATTTA cutrun_memechip_out/dreme_out/dreme.xml cutrun_memechip_out/smooth.243.overlap.optimal.fa Finished invoke: name: fimo15 status: 0 time: 1.14777 Writing output Invoking: meme-chip_html_to_tsv cutrun_memechip_out/meme-chip.html cutrun_memechip_out/summary.tsv Finished invoke: name: summary status: 0 time: 0.206201 Done