Invoking:
  getsize cutnotseq_memechip_out/cut-not-seq.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.086453
Invoking:
  fasta-most -min 50 < cutnotseq_memechip_out/cut-not-seq.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.120087
Invoking:
  fasta-center -dna -len 100 < cutnotseq_memechip_out/cut-not-seq.fa 1> cutnotseq_memechip_out/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.190337
Invoking:
  fasta-shuffle-letters cutnotseq_memechip_out/seqs-centered cutnotseq_memechip_out/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.098397
Invoking:
  fasta-subsample cutnotseq_memechip_out/seqs-centered 600 -rest cutnotseq_memechip_out/seqs-discarded -seed 1 1> cutnotseq_memechip_out/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.147008
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 cutnotseq_memechip_out/cut-not-seq.fa cutnotseq_memechip_out/background
Finished invoke:
  name: bg  status: 0  time: 0.048457
Invoking:
  meme cutnotseq_memechip_out/seqs-sampled -oc cutnotseq_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile cutnotseq_memechip_out/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 855.53455
Invoking:
  dreme -v 1 -oc cutnotseq_memechip_out/dreme_out -png -dna -p cutnotseq_memechip_out/seqs-centered -n cutnotseq_memechip_out/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 174.584726
Invoking:
  centrimo -seqlen 243 -verbosity 1 -oc cutnotseq_memechip_out/centrimo_out -bfile cutnotseq_memechip_out/background cutnotseq_memechip_out/cut-not-seq.fa cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.303222
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 cutnotseq_memechip_out/combined.meme cutnotseq_memechip_out/combined.meme 1> cutnotseq_memechip_out/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.37752
Invoking:
  spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_1 -bgfile cutnotseq_memechip_out/background -primary GGHGCTGTCCATGGTGCTGAA cutnotseq_memechip_out/cut-not-seq.fa cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.765837
Invoking:
  spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_2 -bgfile cutnotseq_memechip_out/background -primary WTWNWTATGYWAATK cutnotseq_memechip_out/cut-not-seq.fa cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 1.088206
Invoking:
  spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_3 -bgfile cutnotseq_memechip_out/background -primary GSGGVDRVVGVGVVGGGRGGSGSGGGGMK cutnotseq_memechip_out/cut-not-seq.fa cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.832116
Invoking:
  spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_4 -bgfile cutnotseq_memechip_out/background -primary RRAGAAA cutnotseq_memechip_out/cut-not-seq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 1.023394
Invoking:
  spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_5 -bgfile cutnotseq_memechip_out/background -primary TATKCA cutnotseq_memechip_out/cut-not-seq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 1.08588
Invoking:
  spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_6 -bgfile cutnotseq_memechip_out/background -primary GGAATKY cutnotseq_memechip_out/cut-not-seq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.731985
Invoking:
  spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_7 -bgfile cutnotseq_memechip_out/background -primary CCCCKCCC cutnotseq_memechip_out/cut-not-seq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.607482
Invoking:
  spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_8 -bgfile cutnotseq_memechip_out/background -primary TKTAAA cutnotseq_memechip_out/cut-not-seq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.953576
Invoking:
  spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_9 -bgfile cutnotseq_memechip_out/background -primary AGAAGCWG cutnotseq_memechip_out/cut-not-seq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.431817
Invoking:
  spamo -verbosity 1 -oc cutnotseq_memechip_out/spamo_out_10 -bgfile cutnotseq_memechip_out/background -primary CWGGGA cutnotseq_memechip_out/cut-not-seq.fa cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 1.056486
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_1 --bgfile cutnotseq_memechip_out/background --motif GGHGCTGTCCATGGTGCTGAA cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/cut-not-seq.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.804122
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_2 --bgfile cutnotseq_memechip_out/background --motif WTWNWTATGYWAATK cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/cut-not-seq.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.901964
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_3 --bgfile cutnotseq_memechip_out/background --motif GSGGVDRVVGVGVVGGGRGGSGSGGGGMK cutnotseq_memechip_out/meme_out/meme.xml cutnotseq_memechip_out/cut-not-seq.fa
Finished invoke:
  name: fimo3  status: 0  time: 1.187895
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_4 --bgfile cutnotseq_memechip_out/background --motif RRAGAAA cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/cut-not-seq.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.604078
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_5 --bgfile cutnotseq_memechip_out/background --motif TATKCA cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/cut-not-seq.fa
Finished invoke:
  name: fimo5  status: 0  time: 1.24679
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_6 --bgfile cutnotseq_memechip_out/background --motif GGAATKY cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/cut-not-seq.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.565902
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_7 --bgfile cutnotseq_memechip_out/background --motif CCCCKCCC cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/cut-not-seq.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.619909
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_8 --bgfile cutnotseq_memechip_out/background --motif TKTAAA cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/cut-not-seq.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.561573
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_9 --bgfile cutnotseq_memechip_out/background --motif AGAAGCWG cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/cut-not-seq.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.686558
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc cutnotseq_memechip_out/fimo_out_10 --bgfile cutnotseq_memechip_out/background --motif CWGGGA cutnotseq_memechip_out/dreme_out/dreme.xml cutnotseq_memechip_out/cut-not-seq.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.597314
Writing output
Invoking:
  meme-chip_html_to_tsv cutnotseq_memechip_out/meme-chip.html cutnotseq_memechip_out/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.170246
Done