# DREME 4.12.0 # command: dreme -v 1 -oc seqnotcut_memechip_out/dreme_out -png -dna -p seqnotcut_memechip_out/seqs-centered -n seqnotcut_memechip_out/seqs-shuffled # positives: 31845 from seqnotcut_memechip_out/seqs-centered (Mon Oct 21 17:04:42 PDT 2019) # negatives: 31845 from seqnotcut_memechip_out/seqs-shuffled (Mon Oct 21 17:04:42 PDT 2019) # host: surya.stanford.edu # when: Mon Oct 21 17:19:43 PDT 2019 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.273 C 0.226 G 0.226 T 0.275 MOTIF ATGYADAT DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ATGYADAT ATHTRCAT 2668 783 1.8e-251 8.4e-247 # ATGCAAAT ATTTGCAT 1035 186 6.5e-146 3.0e-141 # ATGTAAAT ATTTACAT 550 146 7.7e-057 3.5e-052 # ATGCAGAT ATCTGCAT 499 152 9.7e-045 4.4e-040 # ATGCATAT ATATGCAT 305 124 4.2e-019 1.9e-014 # ATGTATAT ATATACAT 185 88 2.0e-009 9.2e-005 # ATGTAGAT ATCTACAT 204 104 5.9e-009 2.7e-004 letter-probability matrix: alength= 4 w= 8 nsites= 2821 E= 8.4e-247 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.662531 0.000000 0.337469 1.000000 0.000000 0.000000 0.000000 0.571429 0.000000 0.248493 0.180078 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF MATRACAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST MATRACAA TTGTYATK 1969 666 1.4e-154 6.2e-150 # CATAACAA TTGTTATG 616 161 1.7e-064 7.9e-060 # CATGACAA TTGTCATG 564 147 2.7e-059 1.2e-054 # AATAACAA TTGTTATT 459 172 1.1e-031 5.2e-027 # AATGACAA TTGTCATT 363 197 8.7e-013 4.0e-008 letter-probability matrix: alength= 4 w= 8 nsites= 2018 E= 6.2e-150 0.411298 0.588702 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.537661 0.000000 0.462339 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF DAAATR DREME-3 # Word RC Word Pos Neg P-value E-value # BEST DAAATR YATTTH 14041 10943 5.7e-140 2.6e-135 # AAAATA TATTTT 4054 2900 4.4e-049 2.0e-044 # TAAATA TATTTA 2605 1734 3.6e-043 1.6e-038 # GAAATG CATTTC 2980 2053 1.2e-042 5.5e-038 # GAAATA TATTTC 2412 1700 7.3e-031 3.3e-026 # TAAATG CATTTA 2570 1962 3.7e-021 1.7e-016 # AAAATG CATTTT 3932 3226 4.3e-019 2.0e-014 letter-probability matrix: alength= 4 w= 6 nsites= 19462 E= 2.6e-135 0.441630 0.000000 0.287124 0.271247 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.490032 0.000000 0.509968 0.000000 MOTIF CTGKGD DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CTGKGD HCMCAG 13534 10545 3.2e-132 1.4e-127 # CTGTGT ACACAG 2671 1759 2.7e-046 1.2e-041 # CTGGGA TCCCAG 3332 2328 7.7e-045 3.5e-040 # CTGTGG CCACAG 2726 1989 3.2e-029 1.4e-024 # CTGTGA TCACAG 2642 1947 8.4e-027 3.8e-022 # CTGGGG CCCCAG 3163 2592 1.6e-015 7.2e-011 # CTGGGT ACCCAG 2257 1792 2.3e-014 1.0e-009 letter-probability matrix: alength= 4 w= 6 nsites= 17715 E= 1.4e-127 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.526559 0.473441 0.000000 0.000000 1.000000 0.000000 0.355687 0.000000 0.354728 0.289585 MOTIF CDGSAG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CDGSAG CTSCHG 10469 8310 6.8e-079 3.0e-074 # CAGCAG CTGCTG 3311 2338 2.7e-042 1.2e-037 # CTGCAG CTGCAG 1934 1349 4.7e-026 2.1e-021 # CTGGAG CTCCAG 3140 2430 1.2e-023 5.2e-019 # CGGGAG CTCCCG 971 663 6.0e-015 2.7e-010 # CAGGAG CTCCTG 2862 2337 1.6e-014 7.1e-010 # CGGCAG CTGCCG 824 671 3.4e-005 1.5e+000 letter-probability matrix: alength= 4 w= 6 nsites= 13348 E= 3.0e-074 0.000000 1.000000 0.000000 0.000000 0.471157 0.000000 0.138822 0.390021 0.000000 0.000000 1.000000 0.000000 0.000000 0.462991 0.537009 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TTYCTB DREME-6 # Word RC Word Pos Neg P-value E-value # BEST TTYCTB VAGRAA 14188 11991 2.4e-070 1.0e-065 # TTTCTC GAGAAA 3007 2142 1.3e-036 5.5e-032 # TTCCTG CAGGAA 2788 2111 3.9e-024 1.7e-019 # TTTCTT AAGAAA 4071 3394 4.0e-017 1.7e-012 # TTCCTC GAGGAA 2528 2043 5.2e-014 2.3e-009 # TTTCTG CAGAAA 2629 2208 1.6e-010 7.2e-006 # TTCCTT AAGGAA 3425 2980 2.4e-009 1.1e-004 letter-probability matrix: alength= 4 w= 6 nsites= 19139 E= 1.0e-065 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.469669 0.000000 0.530331 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.299441 0.292701 0.407858 MOTIF CCCCDCCC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CCCCDCCC GGGHGGGG 1086 457 7.4e-061 3.2e-056 # CCCCACCC GGGTGGGG 381 133 3.0e-029 1.3e-024 # CCCCTCCC GGGAGGGG 483 214 2.4e-025 1.0e-020 # CCCCGCCC GGGCGGGG 286 118 1.3e-017 5.8e-013 letter-probability matrix: alength= 4 w= 8 nsites= 1149 E= 3.2e-056 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.328982 0.000000 0.251523 0.419495 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATGNTAAT DREME-8 # Word RC Word Pos Neg P-value E-value # BEST ATGNTAAT ATTANCAT 893 424 6.4e-040 2.8e-035 # ATGCTAAT ATTAGCAT 318 109 3.0e-025 1.3e-020 # ATGTTAAT ATTAACAT 275 133 7.5e-013 3.2e-008 # ATGATAAT ATTATCAT 179 110 2.8e-005 1.2e+000 # ATGGTAAT ATTACCAT 132 79 1.6e-004 6.8e+000 letter-probability matrix: alength= 4 w= 8 nsites= 906 E= 2.8e-035 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.197572 0.352097 0.146799 0.303532 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF ATGCGCAT DREME-9 # Word RC Word Pos Neg P-value E-value # BEST ATGCGCAT ATGCGCAT 178 13 1.3e-038 5.7e-034 # ATGCGCAT ATGCGCAT 178 13 1.3e-038 5.7e-034 letter-probability matrix: alength= 4 w= 8 nsites= 178 E= 5.7e-034 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF ACGT DREME-10 # Word RC Word Pos Neg P-value E-value # BEST ACGT ACGT 2351 1605 7.0e-035 3.0e-030 # ACGT ACGT 2351 1605 7.0e-035 3.0e-030 letter-probability matrix: alength= 4 w= 4 nsites= 2477 E= 3.0e-030 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF ACACAYAC DREME-11 # Word RC Word Pos Neg P-value E-value # BEST ACACAYAC GTRTGTGT 487 180 3.5e-034 1.5e-029 # ACACACAC GTGTGTGT 366 124 2.9e-029 1.2e-024 # ACACATAC GTATGTGT 153 58 2.1e-011 9.0e-007 letter-probability matrix: alength= 4 w= 8 nsites= 791 E= 1.5e-029 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.814159 0.000000 0.185841 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGRKGGCG DREME-12 # Word RC Word Pos Neg P-value E-value # BEST AGRKGGCG CGCCMYCT 453 164 7.8e-033 3.3e-028 # AGGGGGCG CGCCCCCT 163 59 8.5e-013 3.6e-008 # AGATGGCG CGCCATCT 77 19 9.1e-010 3.8e-005 # AGAGGGCG CGCCCTCT 132 53 2.8e-009 1.2e-004 # AGGTGGCG CGCCACCT 84 35 4.0e-006 1.7e-001 letter-probability matrix: alength= 4 w= 8 nsites= 457 E= 3.3e-028 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.457330 0.000000 0.542670 0.000000 0.000000 0.000000 0.647702 0.352298 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ACARWG DREME-13 # Word RC Word Pos Neg P-value E-value # BEST ACARWG CWYTGT 7653 6434 1.4e-031 5.8e-027 # ACAAAG CTTTGT 2848 2290 2.5e-016 1.1e-011 # ACAGAG CTCTGT 1991 1614 5.5e-011 2.3e-006 # ACAGTG CACTGT 1511 1223 9.8e-009 4.1e-004 # ACAATG CATTGT 2059 1824 5.3e-005 2.2e+000 letter-probability matrix: alength= 4 w= 6 nsites= 8761 E= 5.8e-027 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.586691 0.000000 0.413309 0.000000 0.578587 0.000000 0.000000 0.421413 0.000000 0.000000 1.000000 0.000000 MOTIF RGARA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST RGARA TYTCY 15969 14640 3.0e-026 1.3e-021 # GGAAA TTTCC 5510 4803 1.5e-014 6.4e-010 # AGAGA TCTCT 7132 6534 4.1e-009 1.7e-004 # AGAAA TTTCT 2400 2106 3.0e-006 1.2e-001 # GGAGA TCTCC 5353 5066 1.1e-003 4.6e+001 letter-probability matrix: alength= 4 w= 5 nsites= 22129 E= 1.3e-021 0.472683 0.000000 0.527317 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.383479 0.000000 0.616521 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TATGCAVA DREME-15 # Word RC Word Pos Neg P-value E-value # BEST TATGCAVA TBTGCATA 530 241 2.3e-026 9.3e-022 # TATGCAAA TTTGCATA 270 90 2.0e-022 8.1e-018 # TATGCACA TGTGCATA 141 83 6.3e-005 2.6e+000 # TATGCAGA TCTGCATA 121 69 9.7e-005 4.0e+000 letter-probability matrix: alength= 4 w= 8 nsites= 544 E= 9.3e-022 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.507353 0.270221 0.222426 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCDCCTCC DREME-16 # Word RC Word Pos Neg P-value E-value # BEST CCDCCTCC GGAGGHGG 557 287 2.7e-021 1.1e-016 # CCTCCTCC GGAGGAGG 285 156 3.7e-010 1.5e-005 # CCACCTCC GGAGGTGG 170 75 5.6e-010 2.3e-005 # CCGCCTCC GGAGGCGG 127 60 5.2e-007 2.1e-002 letter-probability matrix: alength= 4 w= 8 nsites= 579 E= 1.1e-016 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.283247 0.000000 0.222798 0.493955 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTGKAA DREME-17 # Word RC Word Pos Neg P-value E-value # BEST CTGKAA TTMCAG 3147 2528 3.9e-018 1.6e-013 # CTGGAA TTCCAG 1792 1443 1.6e-010 6.6e-006 # CTGTAA TTACAG 1422 1127 1.3e-009 5.5e-005 letter-probability matrix: alength= 4 w= 6 nsites= 3324 E= 1.6e-013 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.558363 0.441637 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RCCTGGS DREME-18 # Word RC Word Pos Neg P-value E-value # BEST RCCTGGS SCCAGGY 1630 1187 7.0e-018 2.8e-013 # GCCTGGC GCCAGGC 736 552 1.2e-007 5.0e-003 # GCCTGGG CCCAGGC 284 186 3.3e-006 1.3e-001 # ACCTGGC GCCAGGT 488 364 1.1e-005 4.4e-001 # ACCTGGG CCCAGGT 162 114 2.2e-003 9.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 1680 E= 2.8e-013 0.390476 0.000000 0.609524 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.735119 0.264881 0.000000 MOTIF AAAAMAAA DREME-19 # Word RC Word Pos Neg P-value E-value # BEST AAAAMAAA TTTKTTTT 1085 730 1.4e-017 5.6e-013 # AAAAAAAA TTTTTTTT 683 458 9.6e-012 3.9e-007 # AAAACAAA TTTGTTTT 456 288 3.1e-010 1.3e-005 letter-probability matrix: alength= 4 w= 8 nsites= 1275 E= 5.6e-013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.629804 0.370196 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTSCCWC DREME-20 # Word RC Word Pos Neg P-value E-value # BEST CTSCCWC GWGGSAG 2003 1531 1.6e-016 6.6e-012 # CTCCCTC GAGGGAG 538 388 3.9e-007 1.6e-002 # CTCCCAC GTGGGAG 409 298 1.5e-005 6.2e-001 # CTGCCTC GAGGCAG 661 523 2.9e-005 1.2e+000 # CTGCCAC GTGGCAG 466 373 6.9e-004 2.8e+001 letter-probability matrix: alength= 4 w= 7 nsites= 2088 E= 6.6e-012 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.460728 0.539272 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.419061 0.000000 0.000000 0.580939 0.000000 1.000000 0.000000 0.000000 MOTIF AYATTY DREME-21 # Word RC Word Pos Neg P-value E-value # BEST AYATTY RAATRT 3721 3126 1.4e-014 5.9e-010 # ATATTC GAATAT 1192 977 1.4e-006 5.8e-002 # ACATTC GAATGT 1492 1258 2.7e-006 1.1e-001 # ATATTT AAATAT 566 460 4.7e-004 1.9e+001 # ACATTT AAATGT 710 593 5.8e-004 2.3e+001 letter-probability matrix: alength= 4 w= 6 nsites= 3992 E= 5.9e-010 1.000000 0.000000 0.000000 0.000000 0.000000 0.561874 0.000000 0.438126 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.683617 0.000000 0.316383 MOTIF AGCCACYG DREME-22 # Word RC Word Pos Neg P-value E-value # BEST AGCCACYG CRGTGGCT 208 81 2.1e-014 8.6e-010 # AGCCACCG CGGTGGCT 79 20 8.7e-010 3.5e-005 # AGCCACTG CAGTGGCT 129 61 4.4e-007 1.8e-002 letter-probability matrix: alength= 4 w= 8 nsites= 209 E= 8.6e-010 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.377990 0.000000 0.622010 0.000000 0.000000 1.000000 0.000000 MOTIF CSGCCKC DREME-23 # Word RC Word Pos Neg P-value E-value # BEST CSGCCKC GMGGCSG 755 510 1.8e-012 7.3e-008 # CCGCCGC GCGGCGG 283 166 1.7e-008 6.7e-004 # CGGCCTC GAGGCCG 224 156 2.7e-004 1.1e+001 # CGGCCGC GCGGCCG 203 142 5.8e-004 2.4e+001 # CCGCCTC GAGGCGG 146 97 9.9e-004 4.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 855 E= 7.3e-008 0.000000 1.000000 0.000000 0.000000 0.000000 0.504094 0.495906 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.570760 0.429240 0.000000 1.000000 0.000000 0.000000 MOTIF ATAAKAAT DREME-24 # Word RC Word Pos Neg P-value E-value # BEST ATAAKAAT ATTMTTAT 408 237 6.6e-012 2.7e-007 # ATAATAAT ATTATTAT 241 136 3.2e-008 1.3e-003 # ATAAGAAT ATTCTTAT 170 101 1.6e-005 6.4e-001 letter-probability matrix: alength= 4 w= 8 nsites= 422 E= 2.7e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.405213 0.594787 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF RCCACCAY DREME-25 # Word RC Word Pos Neg P-value E-value # BEST RCCACCAY RTGGTGGY 483 298 1.4e-011 5.7e-007 # ACCACCAC GTGGTGGT 135 74 1.4e-005 5.7e-001 # GCCACCAC GTGGTGGC 135 78 5.6e-005 2.2e+000 # ACCACCAT ATGGTGGT 117 81 6.3e-003 2.5e+002 # GCCACCAT ATGGTGGC 107 73 6.8e-003 2.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 487 E= 5.7e-007 0.505133 0.000000 0.494867 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.544148 0.000000 0.455852 MOTIF TTTAAAAR DREME-26 # Word RC Word Pos Neg P-value E-value # BEST TTTAAAAR YTTTTAAA 562 363 2.3e-011 9.3e-007 # TTTAAAAA TTTTTAAA 360 216 9.0e-010 3.6e-005 # TTTAAAAG CTTTTAAA 237 169 4.1e-004 1.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 570 E= 9.3e-007 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.614035 0.000000 0.385965 0.000000 MOTIF CAGCCWC DREME-27 # Word RC Word Pos Neg P-value E-value # BEST CAGCCWC GWGGCTG 900 653 1.2e-010 4.8e-006 # CAGCCTC GAGGCTG 548 398 5.0e-007 2.0e-002 # CAGCCAC GTGGCTG 360 261 3.8e-005 1.5e+000 letter-probability matrix: alength= 4 w= 7 nsites= 918 E= 4.8e-006 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.394336 0.000000 0.000000 0.605664 0.000000 1.000000 0.000000 0.000000 MOTIF CVGGGA DREME-28 # Word RC Word Pos Neg P-value E-value # BEST CVGGGA TCCCBG 2623 2207 2.6e-010 1.0e-005 # CCGGGA TCCCGG 406 297 2.0e-005 8.2e-001 # CAGGGA TCCCTG 1741 1516 2.8e-005 1.1e+000 # CGGGGA TCCCCG 578 458 9.5e-005 3.8e+000 letter-probability matrix: alength= 4 w= 6 nsites= 2803 E= 1.0e-005 0.000000 1.000000 0.000000 0.000000 0.640742 0.147342 0.211916 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATGAATR DREME-29 # Word RC Word Pos Neg P-value E-value # BEST ATGAATR YATTCAT 899 684 2.5e-008 9.8e-004 # ATGAATA TATTCAT 426 293 3.5e-007 1.4e-002 # ATGAATG CATTCAT 487 395 1.0e-003 4.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 932 E= 9.8e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.462446 0.000000 0.537554 0.000000 MOTIF CACSGTR DREME-30 # Word RC Word Pos Neg P-value E-value # BEST CACSGTR YACSGTG 241 130 4.0e-009 1.6e-004 # CACCGTA TACGGTG 69 31 9.1e-005 3.6e+000 # CACCGTG CACGGTG 114 70 7.2e-004 2.9e+001 # CACGGTA TACCGTG 59 29 9.1e-004 3.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 242 E= 1.6e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.528926 0.000000 0.471074 0.000000 MOTIF CBCAG DREME-31 # Word RC Word Pos Neg P-value E-value # BEST CBCAG CTGVG 9605 8983 3.1e-008 1.2e-003 # CCCAG CTGGG 2065 1758 1.6e-007 6.5e-003 # CTCAG CTGAG 6812 6482 6.7e-004 2.7e+001 # CGCAG CTGCG 1777 1643 9.7e-003 3.9e+002 letter-probability matrix: alength= 4 w= 5 nsites= 11882 E= 1.2e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.185238 0.166386 0.648376 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GCATTMCA DREME-32 # Word RC Word Pos Neg P-value E-value # BEST GCATTMCA TGKAATGC 201 108 6.3e-008 2.5e-003 # GCATTACA TGTAATGC 96 48 3.8e-005 1.5e+000 # GCATTCCA TGGAATGC 105 61 3.9e-004 1.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 202 E= 2.5e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.475248 0.524752 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAAKGCAG DREME-33 # Word RC Word Pos Neg P-value E-value # BEST AAAKGCAG CTGCMTTT 280 169 8.2e-008 3.2e-003 # AAAGGCAG CTGCCTTT 210 127 3.4e-006 1.3e-001 # AAATGCAG CTGCATTT 70 42 5.2e-003 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 280 E= 3.2e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TATGTAA DREME-34 # Word RC Word Pos Neg P-value E-value # BEST TATGTAA TTACATA 375 247 1.4e-007 5.5e-003 # TATGTAA TTACATA 375 247 1.4e-007 5.5e-003 letter-probability matrix: alength= 4 w= 7 nsites= 377 E= 5.5e-003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCACCTAS DREME-35 # Word RC Word Pos Neg P-value E-value # BEST CCACCTAS STAGGTGG 192 105 2.4e-007 9.3e-003 # CCACCTAC GTAGGTGG 93 43 1.1e-005 4.2e-001 # CCACCTAG CTAGGTGG 100 62 1.7e-003 6.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 194 E= 9.3e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.479381 0.520619 0.000000 MOTIF CTACAGGY DREME-36 # Word RC Word Pos Neg P-value E-value # BEST CTACAGGY RCCTGTAG 209 122 9.4e-007 3.7e-002 # CTACAGGC GCCTGTAG 114 63 7.6e-005 3.0e+000 # CTACAGGT ACCTGTAG 95 59 2.3e-003 9.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 209 E= 3.7e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.545455 0.000000 0.454545 MOTIF CGSCTCC DREME-37 # Word RC Word Pos Neg P-value E-value # BEST CGSCTCC GGAGSCG 297 192 1.1e-006 4.2e-002 # CGGCTCC GGAGCCG 176 114 1.6e-004 6.2e+000 # CGCCTCC GGAGGCG 124 80 1.2e-003 4.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 305 E= 4.2e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.409836 0.590164 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCACTAGA DREME-38 # Word RC Word Pos Neg P-value E-value # BEST CCACTAGA TCTAGTGG 120 57 1.2e-006 4.7e-002 # CCACTAGA TCTAGTGG 120 57 1.2e-006 4.7e-002 letter-probability matrix: alength= 4 w= 8 nsites= 120 E= 4.7e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 5250.95 seconds