Invoking:
  getsize intersection_memechip_out/intersection.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.177493
Invoking:
  fasta-most -min 50 < intersection_memechip_out/intersection.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.817615
Invoking:
  fasta-center -dna -len 100 < intersection_memechip_out/intersection.fa 1> intersection_memechip_out/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.134739
Invoking:
  fasta-shuffle-letters intersection_memechip_out/seqs-centered intersection_memechip_out/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.058544
Invoking:
  fasta-subsample intersection_memechip_out/seqs-centered 600 -rest intersection_memechip_out/seqs-discarded -seed 1 1> intersection_memechip_out/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.130836
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 intersection_memechip_out/intersection.fa intersection_memechip_out/background
Finished invoke:
  name: bg  status: 0  time: 0.039914
Invoking:
  meme intersection_memechip_out/seqs-sampled -oc intersection_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile intersection_memechip_out/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 820.991989
Invoking:
  dreme -v 1 -oc intersection_memechip_out/dreme_out -png -dna -p intersection_memechip_out/seqs-centered -n intersection_memechip_out/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 137.132075
Invoking:
  centrimo -seqlen 210 -verbosity 1 -oc intersection_memechip_out/centrimo_out -bfile intersection_memechip_out/background intersection_memechip_out/intersection.fa intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.549092
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 intersection_memechip_out/combined.meme intersection_memechip_out/combined.meme 1> intersection_memechip_out/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.512213
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_1 -bgfile intersection_memechip_out/background -primary ATTTGCATAWSAAWR intersection_memechip_out/intersection.fa intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.469739
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_2 -bgfile intersection_memechip_out/background -primary TCTCTCTGAAGCCTGCTACCTGGAGGCTT intersection_memechip_out/intersection.fa intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.420965
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_3 -bgfile intersection_memechip_out/background -primary GTTTGGGYGGACCCAGTTTCTAATGRCCTG intersection_memechip_out/intersection.fa intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.486097
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_4 -bgfile intersection_memechip_out/background -primary AGGWA intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.54918
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_5 -bgfile intersection_memechip_out/background -primary GRGAR intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.287265
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_6 -bgfile intersection_memechip_out/background -primary CASGTGK intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.319571
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_7 -bgfile intersection_memechip_out/background -primary AWTATTCA intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.377463
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_8 -bgfile intersection_memechip_out/background -primary TTTCTTW intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.237412
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_9 -bgfile intersection_memechip_out/background -primary ACCDCGG intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 1.067064
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_10 -bgfile intersection_memechip_out/background -primary CMTTTCA intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.33079
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_11 -bgfile intersection_memechip_out/background -primary ACAGCWGG intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.297084
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_1 --bgfile intersection_memechip_out/background --motif ATTTGCATAWSAAWR intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.513642
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_2 --bgfile intersection_memechip_out/background --motif TCTCTCTGAAGCCTGCTACCTGGAGGCTT intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.431434
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_3 --bgfile intersection_memechip_out/background --motif GTTTGGGYGGACCCAGTTTCTAATGRCCTG intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.49271
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_4 --bgfile intersection_memechip_out/background --motif AGGWA intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.34379
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_5 --bgfile intersection_memechip_out/background --motif GRGAR intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.389465
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_6 --bgfile intersection_memechip_out/background --motif CASGTGK intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.372386
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_7 --bgfile intersection_memechip_out/background --motif AWTATTCA intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.354861
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_8 --bgfile intersection_memechip_out/background --motif TTTCTTW intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.311885
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_9 --bgfile intersection_memechip_out/background --motif ACCDCGG intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.318235
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_10 --bgfile intersection_memechip_out/background --motif CMTTTCA intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo10  status: 0  time: 1.439573
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_11 --bgfile intersection_memechip_out/background --motif ACAGCWGG intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.312305
Writing output
Invoking:
  meme-chip_html_to_tsv intersection_memechip_out/meme-chip.html intersection_memechip_out/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.183404
Done