Invoking:
  getsize seqnotcut_memechip_out/seq-not-cut.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.106958
Invoking:
  fasta-most -min 50 < seqnotcut_memechip_out/seq-not-cut.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.12665
Invoking:
  fasta-center -dna -len 100 < seqnotcut_memechip_out/seq-not-cut.fa 1> seqnotcut_memechip_out/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.187651
Invoking:
  fasta-shuffle-letters seqnotcut_memechip_out/seqs-centered seqnotcut_memechip_out/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.06971
Invoking:
  fasta-subsample seqnotcut_memechip_out/seqs-centered 600 -rest seqnotcut_memechip_out/seqs-discarded -seed 1 1> seqnotcut_memechip_out/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.144046
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/background
Finished invoke:
  name: bg  status: 0  time: 0.044872
Invoking:
  meme seqnotcut_memechip_out/seqs-sampled -oc seqnotcut_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile seqnotcut_memechip_out/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 804.016503
Invoking:
  dreme -v 1 -oc seqnotcut_memechip_out/dreme_out -png -dna -p seqnotcut_memechip_out/seqs-centered -n seqnotcut_memechip_out/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 573.931871
Invoking:
  centrimo -seqlen 210 -verbosity 1 -oc seqnotcut_memechip_out/centrimo_out -bfile seqnotcut_memechip_out/background seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 1.311689
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 seqnotcut_memechip_out/combined.meme seqnotcut_memechip_out/combined.meme 1> seqnotcut_memechip_out/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.289936
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_1 -bgfile seqnotcut_memechip_out/background -primary TYTGCATRASAAWRR seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.721846
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_2 -bgfile seqnotcut_memechip_out/background -primary ATGCGCAT seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.439877
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_3 -bgfile seqnotcut_memechip_out/background -primary CCTGSDG seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.316566
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_4 -bgfile seqnotcut_memechip_out/background -primary ACAAAGV seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.379256
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_5 -bgfile seqnotcut_memechip_out/background -primary GRGARR seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.362824
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_6 -bgfile seqnotcut_memechip_out/background -primary ATGAATAW seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.38889
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_7 -bgfile seqnotcut_memechip_out/background -primary AAAGRVA seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.310241
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_8 -bgfile seqnotcut_memechip_out/background -primary ATTAVCA seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.353719
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_9 -bgfile seqnotcut_memechip_out/background -primary CTGTGD seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.394769
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_10 -bgfile seqnotcut_memechip_out/background -primary GGGTTCGA seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.355717
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_11 -bgfile seqnotcut_memechip_out/background -primary GGAATGY seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 1.063987
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_12 -bgfile seqnotcut_memechip_out/background -primary TKTAAATR seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.331332
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_13 -bgfile seqnotcut_memechip_out/background -primary CACACSTG seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.290755
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_14 -bgfile seqnotcut_memechip_out/background -primary CCAGGYAC seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.361905
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_15 -bgfile seqnotcut_memechip_out/background -primary CMCCACC seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.431108
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_16 -bgfile seqnotcut_memechip_out/background -primary ASAGRGMGSDRGRRRGAMAGG seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.502263
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_17 -bgfile seqnotcut_memechip_out/background -primary AGAAACTG seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo17  status: 0  time: 0.587497
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_1 --bgfile seqnotcut_memechip_out/background --motif TYTGCATRASAAWRR seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.784137
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_2 --bgfile seqnotcut_memechip_out/background --motif ATGCGCAT seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo2  status: 0  time: 1.068919
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_3 --bgfile seqnotcut_memechip_out/background --motif CCTGSDG seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.832672
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_4 --bgfile seqnotcut_memechip_out/background --motif ACAAAGV seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.60801
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_5 --bgfile seqnotcut_memechip_out/background --motif GRGARR seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.618016
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_6 --bgfile seqnotcut_memechip_out/background --motif ATGAATAW seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.611356
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_7 --bgfile seqnotcut_memechip_out/background --motif AAAGRVA seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.538831
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_8 --bgfile seqnotcut_memechip_out/background --motif ATTAVCA seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.546993
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_9 --bgfile seqnotcut_memechip_out/background --motif CTGTGD seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.583635
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_10 --bgfile seqnotcut_memechip_out/background --motif GGGTTCGA seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.843465
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_11 --bgfile seqnotcut_memechip_out/background --motif GGAATGY seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.853445
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_12 --bgfile seqnotcut_memechip_out/background --motif TKTAAATR seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.535792
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_13 --bgfile seqnotcut_memechip_out/background --motif CACACSTG seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.662085
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_14 --bgfile seqnotcut_memechip_out/background --motif CCAGGYAC seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.615394
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_15 --bgfile seqnotcut_memechip_out/background --motif CMCCACC seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.572693
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_16 --bgfile seqnotcut_memechip_out/background --motif ASAGRGMGSDRGRRRGAMAGG seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo16  status: 0  time: 0.794394
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_17 --bgfile seqnotcut_memechip_out/background --motif AGAAACTG seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo17  status: 0  time: 0.591104
Writing output
Invoking:
  meme-chip_html_to_tsv seqnotcut_memechip_out/meme-chip.html seqnotcut_memechip_out/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.229383
Done