Invoking:
  getsize intersection_memechip_out/intersection.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.049302
Invoking:
  fasta-most -min 50 < intersection_memechip_out/intersection.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.079054
Invoking:
  fasta-center -dna -len 100 < intersection_memechip_out/intersection.fa 1> intersection_memechip_out/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.314606
Invoking:
  fasta-shuffle-letters intersection_memechip_out/seqs-centered intersection_memechip_out/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.04478
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 intersection_memechip_out/intersection.fa intersection_memechip_out/background
Finished invoke:
  name: bg  status: 0  time: 0.035215
Invoking:
  meme intersection_memechip_out/seqs-centered -oc intersection_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile intersection_memechip_out/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 645.659295
Invoking:
  dreme -v 1 -oc intersection_memechip_out/dreme_out -png -dna -p intersection_memechip_out/seqs-centered -n intersection_memechip_out/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 49.461989
Invoking:
  centrimo -seqlen 210 -verbosity 1 -oc intersection_memechip_out/centrimo_out -bfile intersection_memechip_out/background intersection_memechip_out/intersection.fa intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.40355
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 intersection_memechip_out/combined.meme intersection_memechip_out/combined.meme 1> intersection_memechip_out/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 1.909698
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_1 -bgfile intersection_memechip_out/background -primary TTTGCATAWCAAWRR intersection_memechip_out/intersection.fa intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.527839
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_2 -bgfile intersection_memechip_out/background -primary GTCACCTCATTAGCATAAACTCAGGTGTGR intersection_memechip_out/intersection.fa intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.496574
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_3 -bgfile intersection_memechip_out/background -primary GYMVYTAGAARCYRGGTMCAYYCAAWMWKG intersection_memechip_out/intersection.fa intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.53574
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_4 -bgfile intersection_memechip_out/background -primary ATGCGCAT intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.319865
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_5 -bgfile intersection_memechip_out/background -primary ACAAWAS intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.297734
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_6 -bgfile intersection_memechip_out/background -primary AAAGAMA intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.298258
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_7 -bgfile intersection_memechip_out/background -primary CACSTG intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.347837
Invoking:
  spamo -verbosity 1 -oc intersection_memechip_out/spamo_out_8 -bgfile intersection_memechip_out/background -primary CCTTTSA intersection_memechip_out/intersection.fa intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.304528
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_1 --bgfile intersection_memechip_out/background --motif TTTGCATAWCAAWRR intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.364383
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_2 --bgfile intersection_memechip_out/background --motif GTCACCTCATTAGCATAAACTCAGGTGTGR intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.355299
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_3 --bgfile intersection_memechip_out/background --motif GYMVYTAGAARCYRGGTMCAYYCAAWMWKG intersection_memechip_out/meme_out/meme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.331485
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_4 --bgfile intersection_memechip_out/background --motif ATGCGCAT intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.199591
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_5 --bgfile intersection_memechip_out/background --motif ACAAWAS intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.224076
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_6 --bgfile intersection_memechip_out/background --motif AAAGAMA intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo6  status: 0  time: 1.436916
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_7 --bgfile intersection_memechip_out/background --motif CACSTG intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.196597
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc intersection_memechip_out/fimo_out_8 --bgfile intersection_memechip_out/background --motif CCTTTSA intersection_memechip_out/dreme_out/dreme.xml intersection_memechip_out/intersection.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.200707
Writing output
Invoking:
  meme-chip_html_to_tsv intersection_memechip_out/meme-chip.html intersection_memechip_out/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.193449
Done