******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= cutrun_memechip_out/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr4:180018626-180018726 1.0000 100 chr20:44657853-44657953 1.0000 100 chr18:25141367-25141467 1.0000 100 chr9:25204725-25204825 1.0000 100 chr9:92049924-92050024 1.0000 100 chr6:49309354-49309454 1.0000 100 chr3:54222095-54222195 1.0000 100 chr8:93062530-93062630 1.0000 100 chr2:58766570-58766670 1.0000 100 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chr2:203114473-203114573 1.0000 100 chr1:200332858-200332958 1.0000 100 chr6:56111381-56111481 1.0000 100 chr6:34099112-34099212 1.0000 100 chr18:18966432-18966532 1.0000 100 chrX:70142441-70142541 1.0000 100 chr22:37098854-37098954 1.0000 100 chr6:4925745-4925845 1.0000 100 chr2:163697004-163697104 1.0000 100 chr5:120187232-120187332 1.0000 100 chr5:151303485-151303585 1.0000 100 chr2:162225712-162225812 1.0000 100 chr11:66185393-66185493 1.0000 100 chr3:185826658-185826758 1.0000 100 chr1:65774831-65774931 1.0000 100 chr16:7296456-7296556 1.0000 100 chr5:77312448-77312548 1.0000 100 chr9:34458349-34458449 1.0000 100 chr17:32934877-32934977 1.0000 100 chr8:16141332-16141432 1.0000 100 chr14:30410275-30410375 1.0000 100 chr10:115105411-11510551 1.0000 100 chr4:45986605-45986705 1.0000 100 chr7:12463424-12463524 1.0000 100 chr4:185114480-185114580 1.0000 100 chr5:161273490-161273590 1.0000 100 chr11:113344827-11334492 1.0000 100 chr11:57092206-57092306 1.0000 100 chr4:5200585-5200685 1.0000 100 chr14:41085107-41085207 1.0000 100 chr1:202536408-202536508 1.0000 100 chr12:76449185-76449285 1.0000 100 chr12:97819834-97819934 1.0000 100 chr7:43331053-43331153 1.0000 100 chr6:55845325-55845425 1.0000 100 chr3:148916143-148916243 1.0000 100 chr1:230562015-230562115 1.0000 100 chr20:32890632-32890732 1.0000 100 chr4:163084841-163084941 1.0000 100 chr13:100355696-10035579 1.0000 100 chr6:164765617-164765717 1.0000 100 chr14:99117032-99117132 1.0000 100 chr3:155080371-155080471 1.0000 100 chr1:187593533-187593633 1.0000 100 chr7:41848038-41848138 1.0000 100 chr3:62304426-62304526 1.0000 100 chr16:52774863-52774963 1.0000 100 chr6:168609303-168609403 1.0000 100 chr17:38579046-38579146 1.0000 100 chr22:23584321-23584421 1.0000 100 chr9:136324534-136324634 1.0000 100 chr9:128517163-128517263 1.0000 100 chrX:123975730-123975830 1.0000 100 chr18:26488897-26488997 1.0000 100 chr12:86342911-86343011 1.0000 100 chrX:50357201-50357301 1.0000 100 chr5:88999288-88999388 1.0000 100 chr1:2457491-2457591 1.0000 100 chr17:49990166-49990266 1.0000 100 chr17:70146998-70147098 1.0000 100 chr5:141133016-141133116 1.0000 100 chr5:98345556-98345656 1.0000 100 chr1:170456608-170456708 1.0000 100 chr1:102462360-102462460 1.0000 100 chr4:140074652-140074752 1.0000 100 chr3:191406603-191406703 1.0000 100 chr20:47139510-47139610 1.0000 100 chr8:50823846-50823946 1.0000 100 chr6:98316203-98316303 1.0000 100 chr17:74964794-74964894 1.0000 100 chr7:12368602-12368702 1.0000 100 chr6:21691973-21692073 1.0000 100 chr1:183372003-183372103 1.0000 100 chr19:12942736-12942836 1.0000 100 chr14:66392991-66393091 1.0000 100 chr20:5950038-5950138 1.0000 100 chr5:12323135-12323235 1.0000 100 chr16:26610628-26610728 1.0000 100 chr22:27247712-27247812 1.0000 100 chr5:171407313-171407413 1.0000 100 chr6:163681163-163681263 1.0000 100 chr13:43449865-43449965 1.0000 100 chr15:71342286-71342386 1.0000 100 chr2:144649277-144649377 1.0000 100 chr7:70168495-70168595 1.0000 100 chr18:36510850-36510950 1.0000 100 chr1:73012908-73013008 1.0000 100 chr2:98962685-98962785 1.0000 100 chr12:119418210-11941831 1.0000 100 chr8:89603565-89603665 1.0000 100 chr3:71778378-71778478 1.0000 100 chr7:138142944-138143044 1.0000 100 chr13:56011103-56011203 1.0000 100 chr8:89471888-89471988 1.0000 100 chr8:39584457-39584557 1.0000 100 chr2:44243171-44243271 1.0000 100 chr13:26484962-26485062 1.0000 100 chr2:52683880-52683980 1.0000 100 chr14:96414317-96414417 1.0000 100 chr19:14869500-14869600 1.0000 100 chr19:18632758-18632858 1.0000 100 chr6:129064758-129064858 1.0000 100 chr1:17796344-17796444 1.0000 100 chr1:22937869-22937969 1.0000 100 chr8:89378254-89378354 1.0000 100 chr17:38219103-38219203 1.0000 100 chr1:98513474-98513574 1.0000 100 chrX:39473012-39473112 1.0000 100 chr8:61588691-61588791 1.0000 100 chr1:175027876-175027976 1.0000 100 chr12:26039879-26039979 1.0000 100 chr2:175828900-175829000 1.0000 100 chr2:19285666-19285766 1.0000 100 chr8:79065289-79065389 1.0000 100 chr5:68218043-68218143 1.0000 100 chr7:153127848-153127948 1.0000 100 chr6:49306455-49306555 1.0000 100 chrX:1323917-1324017 1.0000 100 chr6:22878054-22878154 1.0000 100 chr12:39845115-39845215 1.0000 100 chr18:33430686-33430786 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme cutrun_memechip_out/seqs-sampled -oc cutrun_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile cutrun_memechip_out/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 585 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 58500 N= 585 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.281 C 0.219 G 0.219 T 0.281 Background letter frequencies (from cutrun_memechip_out/background): A 0.286 C 0.214 G 0.214 T 0.286 ******************************************************************************** ******************************************************************************** MOTIF GGHGCTGTCCRTGGTGCTGAA MEME-1 width = 21 sites = 42 llr = 837 E-value = 2.3e-158 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGHGCTGTCCRTGGTGCTGAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1121::::::41:::1:::87 pos.-specific C :34:a:2:a911:::2a::11 probability G 86:8::8:::41aa:7::a1: matrix T 113::a:a:116::a::a::2 bits 2.2 2.0 * * ** * * 1.8 ** ** *** *** 1.6 ****** *** *** Relative 1.3 * ****** *** *** Entropy 1.1 * ******* *** **** (28.8 bits) 0.9 * ******* ******** 0.7 ** ******* ********* 0.4 ** ******* ********** 0.2 ********************* 0.0 --------------------- Multilevel GGCGCTGTCCATGGTGCTGAA consensus CT C G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCRTGGTGCTGAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr14:93389383-93389483 - 25 9.53e-13 GGGAGGCGGA GGCGCTGTCCGCGGTGCTGAA AACTCGCCGC chr9:34413139-34413239 + 33 9.53e-13 GAGGATGAAA GGCGCTCTCCGTGGTGCTGAA CAATCTTGCC chr17:77290449-77290549 - 29 3.65e-12 CCACCCGCAG GTCGCTGTCCGTGGTGCTGAA CTCCTGCCTT chr4:8581862-8581962 - 42 4.35e-12 GCGCAACCGC GGTGCTGTCCAGGGTGCTGAA TGCGCTCACC chr10:125374304-12537440 - 50 7.55e-12 AAGCAACAGG GGAGCTGTCCATGGTGCTGAC CACAACCCCA chr5:16178748-16178848 + 49 8.71e-12 GAGGTAGGCG TGCGCTGTCCGTGGTGCTGAA AGCTTGACCG chr1:37485989-37486089 + 17 8.71e-12 CCCGGCCCTG GCTGCTCTCCGTGGTGCTGAA CACAGAGGTT chr15:77994753-77994853 - 22 1.12e-11 AGTCAGGAAG GCAGCTGTCCGGGGTGCTGAA CCAAACCACC chr16:7296456-7296556 - 51 1.33e-11 GTGCTACGTA GGCGCTGTCCTTGGTGCTGAT ACCACCGCAG chr19:55727812-55727912 + 51 1.33e-11 AAGGCTCCCT GGCGCTGTCCTTGGTGCTGAC GCGGTTCTGG chr11:113344827-11334492 - 23 2.82e-11 TCCCACGGTT GCCGCTGTCCTTGGTCCTGAA CTTTCGTTCT chr20:44657853-44657953 + 56 3.72e-11 GAATGCTCCG GGCGCTGTCCAAGGTGCTGGA ATGCGCCGCG chr20:37320922-37321022 + 10 4.04e-11 GCCTCACAG GACGCTGTCCGTGGTGCTGAC TTGTTTTTCT chr5:151625750-151625850 + 12 4.04e-11 ACGTGGTTCT GCTGCTGTCCGTGGTACTGAA CTGTGTCAGA chr4:180018626-180018726 + 24 4.04e-11 GCTTTGTCAC GGAGCTCTCCATGGTGCTGAT GCACTTGCTC chr11:113861790-11386189 - 27 4.98e-11 CAAACCAGCT GGTGCTGGCCGTGGTGCTGAA GCTCTCATCT chr6:34082988-34083088 - 70 7.12e-11 ACCCCTGGAG GCTGCTGTCCAAGGTCCTGAA CCAGGACCTT chr19:5403935-5404035 + 58 8.97e-11 CCAGGGCTGT GTCGCTGTCCGTGGTACTGAA CGGTGCTGGT chr1:11695774-11695874 + 48 9.88e-11 AGGCTGGCAG GGCGCTGTCCGCAGTGCTGAA GCGCCTCTCT chr16:83453734-83453834 - 44 1.11e-10 AGCTTTCTAG GGAGCTGTCCTTGGTACTGAA CAATTTTTCC chr19:50490039-50490139 + 19 1.71e-10 CCTTTTGTGC TCCGCTGTCCCTGGTGCTGAA CCCACATCCC chr4:175749609-175749709 - 44 2.06e-10 CATACTGCGG GGAGCTGTCTAAGGTGCTGAA GCTTCCCAAG chr19:12942736-12942836 - 54 2.52e-10 GGTCTCGCGC GCTCCTGTCCGCGGTGCTGAA ATCCAAGCGC chr9:134651767-134651867 - 36 2.52e-10 TCAGAGCCTG GGAGCTGTCCAGGGTCCTGCA CCGCTTGAGG chr19:39714249-39714349 - 39 2.80e-10 GCACCACTGG GCTGCTCTCCGTGGTTCTGAA CTCCACTGTC chr10:105025384-10502548 + 53 3.11e-10 GGACGGCTGG GGAGCTGTCCATGGTCTTGAA GTGTAACTGA chr9:132552613-132552713 + 55 3.45e-10 GTGGATCCGG GGCGCTGTCTCTGGTCCTGAA AGTCACAGTC chr22:37040153-37040253 + 59 3.77e-10 GTAGTTGGAA GATGCTCTCCAAGGTGCTGAA GCAAGTGGGG chr6:25652128-25652228 - 47 3.77e-10 TCGGTTCCCG GGAGCTGTCCATGGTGTTGAC GACGAAGACC chr1:30224866-30224966 + 28 4.16e-10 GCATCCCCTC AGAGCTCTCCGCGGTGCTGAA ACCCACCTGT chr19:47940696-47940796 + 43 4.16e-10 AAGGGAGGCA TGTGCTGTCCGTGGTCCTGAC GTGGGACCCT chr2:77185625-77185725 + 48 4.16e-10 AAGCCCAAAA GGGACTGTCCTTGGTGCTGAA AAGGGAAGCA chr1:11533399-11533499 + 32 6.05e-10 GCTGCCAGCA GCCACTGTCCATGGTTCTGAA ACACCCCAGG chr7:154861370-154861470 - 61 8.57e-10 GCGCGGCTTT GGGGCTGTCCGCGGTGCTGCT GCGCTCCCCG chr7:154106674-154106774 + 59 2.02e-09 TGGAAGCCCA GTCGCTCTCCAAGGTCCTGAT TTTGAAAGGC chr13:94342152-94342252 - 21 3.53e-09 CAGCTGCCAG GGAGCTGTCCATGGTCCTAGA CTTTCTAACA chr8:142725922-142726022 + 56 4.44e-09 CAGTACCAGG ACTACTGTCCATGGTGCTGGA CGGTCTCACC chr11:70496106-70496206 - 73 5.55e-09 GGGCACT GGCTCTCTGCAGGGTGCTGAA CTAGACAGCT chr7:2340782-2340882 - 12 3.00e-08 GACCTCTGTT GCTGCTGTGCGTGCTGCTGCT TCAATAAAAG chr8:10847519-10847619 + 40 3.39e-08 TTGGAGAAGA AATACTGCCCATGGTGCTGAA AAGCCTGTTC chr4:1404166-1404266 + 76 3.50e-07 CCGCGGCTGG CTCCCTCTCCCGGGTGCTGCT GGTT chr3:62304426-62304526 + 71 5.76e-07 AATGTGATTT GGTTTTGTCTAAAGTGCTGAT AGTGGGCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCRTGGTGCTGAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:93389383-93389483 9.5e-13 24_[-1]_55 chr9:34413139-34413239 9.5e-13 32_[+1]_47 chr17:77290449-77290549 3.7e-12 28_[-1]_51 chr4:8581862-8581962 4.4e-12 41_[-1]_38 chr10:125374304-12537440 7.6e-12 49_[-1]_30 chr5:16178748-16178848 8.7e-12 48_[+1]_31 chr1:37485989-37486089 8.7e-12 16_[+1]_63 chr15:77994753-77994853 1.1e-11 21_[-1]_58 chr16:7296456-7296556 1.3e-11 50_[-1]_29 chr19:55727812-55727912 1.3e-11 50_[+1]_29 chr11:113344827-11334492 2.8e-11 22_[-1]_57 chr20:44657853-44657953 3.7e-11 55_[+1]_24 chr20:37320922-37321022 4e-11 9_[+1]_70 chr5:151625750-151625850 4e-11 11_[+1]_68 chr4:180018626-180018726 4e-11 23_[+1]_56 chr11:113861790-11386189 5e-11 26_[-1]_53 chr6:34082988-34083088 7.1e-11 69_[-1]_10 chr19:5403935-5404035 9e-11 57_[+1]_22 chr1:11695774-11695874 9.9e-11 47_[+1]_32 chr16:83453734-83453834 1.1e-10 43_[-1]_36 chr19:50490039-50490139 1.7e-10 18_[+1]_61 chr4:175749609-175749709 2.1e-10 43_[-1]_36 chr19:12942736-12942836 2.5e-10 53_[-1]_26 chr9:134651767-134651867 2.5e-10 35_[-1]_44 chr19:39714249-39714349 2.8e-10 38_[-1]_41 chr10:105025384-10502548 3.1e-10 52_[+1]_27 chr9:132552613-132552713 3.5e-10 54_[+1]_25 chr22:37040153-37040253 3.8e-10 58_[+1]_21 chr6:25652128-25652228 3.8e-10 46_[-1]_33 chr1:30224866-30224966 4.2e-10 27_[+1]_52 chr19:47940696-47940796 4.2e-10 42_[+1]_37 chr2:77185625-77185725 4.2e-10 47_[+1]_32 chr1:11533399-11533499 6e-10 31_[+1]_48 chr7:154861370-154861470 8.6e-10 60_[-1]_19 chr7:154106674-154106774 2e-09 58_[+1]_21 chr13:94342152-94342252 3.5e-09 20_[-1]_59 chr8:142725922-142726022 4.4e-09 55_[+1]_24 chr11:70496106-70496206 5.6e-09 72_[-1]_7 chr7:2340782-2340882 3e-08 11_[-1]_68 chr8:10847519-10847619 3.4e-08 39_[+1]_40 chr4:1404166-1404266 3.5e-07 75_[+1]_4 chr3:62304426-62304526 5.8e-07 70_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCRTGGTGCTGAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGHGCTGTCCRTGGTGCTGAA width=21 seqs=42 chr14:93389383-93389483 ( 25) GGCGCTGTCCGCGGTGCTGAA 1 chr9:34413139-34413239 ( 33) GGCGCTCTCCGTGGTGCTGAA 1 chr17:77290449-77290549 ( 29) GTCGCTGTCCGTGGTGCTGAA 1 chr4:8581862-8581962 ( 42) GGTGCTGTCCAGGGTGCTGAA 1 chr10:125374304-12537440 ( 50) GGAGCTGTCCATGGTGCTGAC 1 chr5:16178748-16178848 ( 49) TGCGCTGTCCGTGGTGCTGAA 1 chr1:37485989-37486089 ( 17) GCTGCTCTCCGTGGTGCTGAA 1 chr15:77994753-77994853 ( 22) GCAGCTGTCCGGGGTGCTGAA 1 chr16:7296456-7296556 ( 51) GGCGCTGTCCTTGGTGCTGAT 1 chr19:55727812-55727912 ( 51) GGCGCTGTCCTTGGTGCTGAC 1 chr11:113344827-11334492 ( 23) GCCGCTGTCCTTGGTCCTGAA 1 chr20:44657853-44657953 ( 56) GGCGCTGTCCAAGGTGCTGGA 1 chr20:37320922-37321022 ( 10) GACGCTGTCCGTGGTGCTGAC 1 chr5:151625750-151625850 ( 12) GCTGCTGTCCGTGGTACTGAA 1 chr4:180018626-180018726 ( 24) GGAGCTCTCCATGGTGCTGAT 1 chr11:113861790-11386189 ( 27) GGTGCTGGCCGTGGTGCTGAA 1 chr6:34082988-34083088 ( 70) GCTGCTGTCCAAGGTCCTGAA 1 chr19:5403935-5404035 ( 58) GTCGCTGTCCGTGGTACTGAA 1 chr1:11695774-11695874 ( 48) GGCGCTGTCCGCAGTGCTGAA 1 chr16:83453734-83453834 ( 44) GGAGCTGTCCTTGGTACTGAA 1 chr19:50490039-50490139 ( 19) TCCGCTGTCCCTGGTGCTGAA 1 chr4:175749609-175749709 ( 44) GGAGCTGTCTAAGGTGCTGAA 1 chr19:12942736-12942836 ( 54) GCTCCTGTCCGCGGTGCTGAA 1 chr9:134651767-134651867 ( 36) GGAGCTGTCCAGGGTCCTGCA 1 chr19:39714249-39714349 ( 39) GCTGCTCTCCGTGGTTCTGAA 1 chr10:105025384-10502548 ( 53) GGAGCTGTCCATGGTCTTGAA 1 chr9:132552613-132552713 ( 55) GGCGCTGTCTCTGGTCCTGAA 1 chr22:37040153-37040253 ( 59) GATGCTCTCCAAGGTGCTGAA 1 chr6:25652128-25652228 ( 47) GGAGCTGTCCATGGTGTTGAC 1 chr1:30224866-30224966 ( 28) AGAGCTCTCCGCGGTGCTGAA 1 chr19:47940696-47940796 ( 43) TGTGCTGTCCGTGGTCCTGAC 1 chr2:77185625-77185725 ( 48) GGGACTGTCCTTGGTGCTGAA 1 chr1:11533399-11533499 ( 32) GCCACTGTCCATGGTTCTGAA 1 chr7:154861370-154861470 ( 61) GGGGCTGTCCGCGGTGCTGCT 1 chr7:154106674-154106774 ( 59) GTCGCTCTCCAAGGTCCTGAT 1 chr13:94342152-94342252 ( 21) GGAGCTGTCCATGGTCCTAGA 1 chr8:142725922-142726022 ( 56) ACTACTGTCCATGGTGCTGGA 1 chr11:70496106-70496206 ( 73) GGCTCTCTGCAGGGTGCTGAA 1 chr7:2340782-2340882 ( 12) GCTGCTGTGCGTGCTGCTGCT 1 chr8:10847519-10847619 ( 40) AATACTGCCCATGGTGCTGAA 1 chr4:1404166-1404266 ( 76) CTCCCTCTCCCGGGTGCTGCT 1 chr3:62304426-62304526 ( 71) GGTTTTGTCTAAAGTGCTGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCRTGGTGCTGAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 46800 bayes= 11.9778 E= 2.3e-158 -200 -317 196 -200 -200 29 142 -158 -26 92 -217 12 -158 -217 192 -258 -1204 219 -1204 -358 -1204 -1204 -1204 181 -1204 0 187 -1204 -1204 -317 -317 174 -1204 215 -217 -1204 -1204 212 -1204 -200 50 -158 92 -126 -100 -85 -85 111 -258 -1204 215 -1204 -1204 -317 219 -1204 -1204 -1204 -1204 181 -200 -17 169 -258 -1204 215 -1204 -258 -1204 -1204 -1204 181 -358 -1204 219 -1204 154 -117 -158 -1204 132 -85 -1204 -78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCRTGGTGCTGAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 42 E= 2.3e-158 0.071429 0.023810 0.833333 0.071429 0.071429 0.261905 0.571429 0.095238 0.238095 0.404762 0.047619 0.309524 0.095238 0.047619 0.809524 0.047619 0.000000 0.976190 0.000000 0.023810 0.000000 0.000000 0.000000 1.000000 0.000000 0.214286 0.785714 0.000000 0.000000 0.023810 0.023810 0.952381 0.000000 0.952381 0.047619 0.000000 0.000000 0.928571 0.000000 0.071429 0.404762 0.071429 0.404762 0.119048 0.142857 0.119048 0.119048 0.619048 0.047619 0.000000 0.952381 0.000000 0.000000 0.023810 0.976190 0.000000 0.000000 0.000000 0.000000 1.000000 0.071429 0.190476 0.690476 0.047619 0.000000 0.952381 0.000000 0.047619 0.000000 0.000000 0.000000 1.000000 0.023810 0.000000 0.976190 0.000000 0.833333 0.095238 0.071429 0.000000 0.714286 0.119048 0.000000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCRTGGTGCTGAA MEME-1 regular expression -------------------------------------------------------------------------------- G[GC][CTA]GCT[GC]TCC[AG]TGGTGCTGAA -------------------------------------------------------------------------------- Time 283.11 secs. ******************************************************************************** ******************************************************************************** MOTIF WTTVWTATGCAAATK MEME-2 width = 15 sites = 103 llr = 1032 E-value = 1.9e-057 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTTVWTATGCAAATK MEME-2 Description -------------------------------------------------------------------------------- Simplified A 412342a:::88a12 pos.-specific C ::12:1:::7:::11 probability G 11:3:1::a::2::3 matrix T 687156:a:221:84 bits 2.2 * 2.0 * 1.8 *** * 1.6 *** * Relative 1.3 *** * Entropy 1.1 *** * ** (14.4 bits) 0.9 * ******** 0.7 *** ******** 0.4 *** ********** 0.2 *************** 0.0 --------------- Multilevel TTTGTTATGCAAATT consensus A AAA TT G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTVWTATGCAAATK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr18:33407230-33407330 - 55 5.13e-09 AAGGATAAGG TTTGTTATGCAAATT TAAGTCAGTG chrX:27075892-27075992 + 16 1.32e-08 atcctaatct tttattatgcaaatg tggcttctac chr12:23738259-23738359 - 80 1.32e-08 GAATCT TTTATTATGCAAATG GGGTTTACCT chr6:168609303-168609403 - 55 2.74e-08 ACCTTAGCCC TTTAATATGCAAATG TGGGTCACCA chr2:203114473-203114573 - 86 2.74e-08 . TTTAATATGCAAATG TAGGCCATTA chr8:124491623-124491723 - 38 2.74e-08 ACCCTAGCCT TTTAATATGCAAATG CAGGGCACCA chr6:49306455-49306555 - 3 5.14e-08 AGTCTTTGTT ATTATTATGCAAATT CG chr12:119418210-11941831 + 21 7.53e-08 CCTGCGGGCT TTTGTTATGCAGATG GCGGCAGGAG chr7:101218237-101218337 - 17 7.53e-08 ACCCTAATCT TTTGTTATGCAGATG GGGTCTCTAC chr8:40177060-40177160 + 74 9.07e-08 TGATACAGCT TTTGTTATGCTAATG GACCTCATTC chr8:59461213-59461313 - 56 9.07e-08 TAGGGATGTC TTTGTTATGCTAATG AGGTAATTCG chr1:220511927-220512027 + 7 9.07e-08 tcaagg tttgttatgcagatt tcaggtggtg chr9:37339654-37339754 - 36 1.16e-07 CTAACAGTAA TTTTTTATGCAAATG AACCTGCTGG chr1:63770092-63770192 - 13 1.16e-07 ATACCTACTT TTTGTTATGTAAATT AATGTACATA chr19:13763452-13763552 - 25 1.43e-07 ACCCTAATGT TTTATTATGCAGATG GGTTCTCTAC chr12:81077733-81077833 + 54 1.43e-07 actctaatct tttattatgcagatg agttttctac chr13:23454578-23454678 - 13 2.98e-07 CTTTCTATAC TTTGAGATGCAAATT TTCTCCTTTA chr4:106476109-106476209 + 50 3.64e-07 TACGATACCC ATTATTATGCAGATG AGTCCTAAAT chr2:214991674-214991774 + 8 3.64e-07 TGTTCAG TTTCTTATGTAAATT TATGCAAAAA chr16:29719997-29720097 - 30 4.34e-07 ACCCTAGCCT TTTAAGATGCAAATG CAGGGCACCA chr6:133490795-133490895 + 19 6.58e-07 TGAATCCTTT ATTCTTATGCAAATC AAGCCAGGAA chr2:8820801-8820901 + 42 7.44e-07 TAAATGTAGT TTCAATATGCAAATT CTCCTAATTA chr12:77266046-77266146 - 25 8.51e-07 ACCCTAGCTT TTTAGTATGCAAATG CAGGGCGCCA chr18:57531223-57531323 - 52 1.34e-06 GCCTTGGTGC ATTGTTATGTAGATG AGCTTTTGCT chr6:49309354-49309454 + 35 1.34e-06 aactagaagc ttttatatgtaaatg ctggcagctg chr6:164765617-164765717 + 50 1.56e-06 CTTGGCATCC ATTGAAATGTAAATG GTACTACCCT chr10:90462586-90462686 + 61 1.56e-06 AACAAGAGTA GTTGTTATGCAAATA CCAAGGAATT chr2:144649277-144649377 + 59 1.84e-06 TGATGTGGAC TTAATTATGCTAATT TAGACAGCTG chr7:128898322-128898422 + 40 1.84e-06 CGTGGCAACC ATTATAATGTAAATG AGCCTTCTTG chr20:5950038-5950138 + 22 2.13e-06 TCTTTCTGGC TTTAATATGTTAATT AGCTGACTGA chr7:115456226-115456326 + 12 2.13e-06 GCCCATGTGC ATTATAATGCAAATC AATTCAAGTA chr13:94796031-94796131 - 60 2.13e-06 AGTCTTTTTC TTACATATGCAAATA GGACAACAGC chr5:143390507-143390607 - 19 3.14e-06 CCTCTGTGCC ATTGAGATGTAAATT TTCTACCTTG chr8:32314721-32314821 - 53 3.14e-06 ATTTGGGCCA ATTGTCATGTAAATG ACATAGAGGA chr17:49990166-49990266 - 55 3.97e-06 GTGATTCTAA AGAGATATGCAAATT CAGCTCCGAC chr4:171805766-171805866 - 69 3.97e-06 TTGTAATGAG ATACTTATGCTAATT TCCCCCATCA chr7:76302541-76302641 + 68 4.44e-06 accctgatct tttattatgcagacg gattttctac chr4:185114480-185114580 - 58 5.00e-06 GTAACCTAAT TTCCATATGCTAATT AGATCCCATA chr12:119059937-11906003 + 17 5.00e-06 CCCTACATAT ttccatatgcaaatc aactgataga chr4:160304179-160304279 + 47 5.00e-06 GCATCCATGT TTTGTTATGGTAATT TTTTATTTTT chrX:39473012-39473112 + 60 5.59e-06 tgggagcttg ttagaaatgcaaatc tcgggcccgc chr11:31263927-31264027 + 57 5.59e-06 GCTGAGAGGC TGAGTTATGCAAATA GCCTTTGCTA chr13:72333753-72333853 - 71 6.31e-06 AATGAAATGC ATTTTAATGCAGATT TGAGGGACTA chr4:163084841-163084941 - 21 7.06e-06 CTCTCGGCGA GTTGATATGCAAAAT AGTTACGTCA chr8:129994481-129994581 - 46 7.95e-06 GGCAATGCAG AATTTTATGCAAATG CTGCAGGTCA chr4:140074652-140074752 + 48 8.93e-06 ctttatctta tgtaaaatgcagatt catagagtgc chr9:75294882-75294982 - 6 8.93e-06 TTTGTTCACA TTAGAGATGCTAATT ATTGC chr10:89384945-89385045 - 84 8.93e-06 CC TTACAAATGCAGATT TCCTATATAG chr2:179076535-179076635 + 42 1.11e-05 TGACATACCC TGTGTCATGCTAATG GGGAGGATTA chr11:12885446-12885546 + 51 1.11e-05 GCAGAGCTTT GTTGAGATGCAAATA ACCACCCCCC chr7:113792283-113792383 + 51 1.11e-05 GCACCTGCTT TTGCATATGCAAATC TGTTGTTTTG chr5:90680312-90680412 + 36 1.23e-05 TATAAAGAGT ATAAATATGCAAACT AGACAATTAA chr7:110736700-110736800 - 81 1.23e-05 GGGCC TTTTTTATGCAAACA TGCAAAAAGT chr11:22355066-22355166 + 61 1.23e-05 GACTTTATAG TTTCAGATGTAGATT TAATTTAACA chr6:122773345-122773445 + 47 1.23e-05 AACCTATGCT TTTTCTATGTAAATT TCAACATACA chr6:99084724-99084824 + 2 1.23e-05 C ATTGTAATGCAGAAT GCATAGCTTC chr7:41848038-41848138 + 33 1.36e-05 TTATTCTTCC ATTGTCATGGAAATT ACTAAAGCAA chr7:32720072-32720172 - 10 1.36e-05 GGGAGTTTCC TTTAGTATGCTAATA TATTATAAT chr2:200733237-200733337 - 7 1.36e-05 CATTCCTTGA ATTCAAATGTTAATT ATTCCC chr10:60966237-60966337 - 59 1.36e-05 TGTAATGTTA AGTATTATGTTAATG AAGCATGTCA chr9:10921319-10921419 - 26 1.50e-05 CTTTCTTTCT TTTGTAATGCATATC TAAGTATGTA chr4:74850736-74850836 - 20 1.66e-05 CGTGTTGCCC ATCCATATGCAAAAT CATCCCTCCC chr3:181433353-181433453 + 36 1.66e-05 CTGGCCAGCC ATTGTAATGCATATA CGGATTATTC chr14:96414317-96414417 - 81 1.83e-05 ATATA ATTAAAATGAAAATT TATCCATCTG chr7:7936939-7937039 + 36 1.83e-05 atgtaaggta atacatatgttaatt agctccatgt chr1:178252221-178252321 - 68 1.83e-05 TAAACCAGTA TTTCAAATGTAAAAT TCTTCCAAAT chr12:28612996-28613096 + 3 1.83e-05 ta actatcatgcaaatg ttaggtggta chr18:60544047-60544147 - 16 2.21e-05 CACTCTTTAT TTCACTATGCTAATG AATTATCACT chr18:25141367-25141467 + 1 2.21e-05 . AGTGTAATGCAAACG CAAGTGTCAT chr14:79329159-79329259 - 83 2.42e-05 CTC ATACTAATGCAAAAT TTGTTTTCTT chr17:65748239-65748339 + 85 2.42e-05 CTGATTACTC ATTCAAATGCAGAAT A chr1:183603054-183603154 + 14 2.42e-05 TTCTAAAAAA GATGTAATGCAAATG CGAAGCCAAA chr1:73012908-73013008 - 18 2.66e-05 ATTTAAGTGT TCAATTATGCTAATG CTGTTCCCCA chr17:69028790-69028890 + 25 2.66e-05 CACATCTGAC TTTGTTATGGAAAAA CATGTATAAA chr3:78524918-78525018 + 1 2.66e-05 . tttattatgaagata aaaatatatc chr8:5023370-5023470 - 4 2.91e-05 ATTGATCTTA TGTAAAATGTAGATT TAC chr7:43331053-43331153 + 14 3.18e-05 gagatttcct ttatagatgtaaatt tctcttacaa chr4:5200585-5200685 - 44 3.18e-05 ACATAGCAAC AAAGATATGCTAATG ACAAGCACTT chr1:69542718-69542818 + 8 3.18e-05 tttttgt ttatagatgtaaatt gattttacaa chr3:2344959-2345059 + 82 3.48e-05 TCAAGTTTAG ATTTATATGCTTATT AACT chr10:115472392-11547249 - 42 3.48e-05 CAGTTTTTGG TGCCCTATGCAAATG ACACACCTGG chr8:70888984-70889084 - 4 3.48e-05 AAGAAAACCT TTTGTTAAGTAAATT TAG chr18:56179199-56179299 - 36 3.48e-05 TGGAGTCACA TTGTCTATGCAAATG GCGTCCTGCT chr11:76653143-76653243 - 24 4.12e-05 AAGGATAGTT AAACATATGCAAATA CAAAAATCAA chr4:189320774-189320874 - 54 4.12e-05 ATGTTTACTT TATCTTATGCAAAAA TGCAGACGCA chr7:84541000-84541100 + 28 4.12e-05 TGTTCTCAGT TTTCTTATGTTAAAA ATAGTCTCAC chr18:4119127-4119227 - 64 4.48e-05 ATAGAGTGCT GTTCAAATGCAGATC GATCTGAGTG chr18:48943853-48943953 + 76 4.48e-05 gaagtcaggc atagacatgcaaact agaagctttt chr8:128055732-128055832 + 77 4.86e-05 gatccctggg attgtgatgataatt aaatacact chr6:21691973-21692073 - 60 5.27e-05 CTCACCACTC TTTATCATGAAGATT ATCTTACTTA chr16:26610628-26610728 + 55 5.70e-05 tataggaaca atgggtatgcaaatc aattcttaaa chr6:55845325-55845425 - 62 5.70e-05 AGACTATAAT ATTAATATGGAAAAA TTCAGTGGTG chr13:29003910-29004010 + 20 6.17e-05 TATGTCTTAA ACTGTTATGGAAATA AGGATGGTCC chr20:6745158-6745258 + 40 6.17e-05 GGGGATCACT ATTTTAATGTTGATT TGCATAATGT chr16:30689234-30689334 + 45 6.17e-05 GGAGGGGCTC TCGGTGATGCAAATG AGTGTTGACT chr14:41085107-41085207 + 23 7.19e-05 AGATAGTATT TGAATAATGCATATG AGCTTCAGAG chr21:20492736-20492836 + 7 7.19e-05 tttcct attatcatgctaaaa tctccaccct chr19:14869500-14869600 - 42 7.75e-05 CCAATCTTTA AGCCTTATGTAAATC GGACACCGCC chr17:47841480-47841580 + 44 8.33e-05 CCCAGTCCCA GGTAGTATGCAAATA TAATGTCACG chr11:94382988-94383088 - 65 8.97e-05 ACTTGGTGAA TATTCTATGTAAATG AAGTGAATAA chr2:162225712-162225812 + 44 9.62e-05 TCTGTTGGAA TTCAATATGCATACT GTTTGTTTTG chr4:69269617-69269717 - 56 1.11e-04 AATCAATACA TGTAAGATGTATATT GGTTTGGTCT chr6:31587305-31587405 + 37 2.93e-04 TTCTCCCACA TTCGTCGTGTAAATT CTGCGTCCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTVWTATGCAAATK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:33407230-33407330 5.1e-09 54_[-2]_31 chrX:27075892-27075992 1.3e-08 15_[+2]_70 chr12:23738259-23738359 1.3e-08 79_[-2]_6 chr6:168609303-168609403 2.7e-08 54_[-2]_31 chr2:203114473-203114573 2.7e-08 85_[-2] chr8:124491623-124491723 2.7e-08 37_[-2]_48 chr6:49306455-49306555 5.1e-08 2_[-2]_83 chr12:119418210-11941831 7.5e-08 20_[+2]_65 chr7:101218237-101218337 7.5e-08 16_[-2]_69 chr8:40177060-40177160 9.1e-08 73_[+2]_12 chr8:59461213-59461313 9.1e-08 55_[-2]_30 chr1:220511927-220512027 9.1e-08 6_[+2]_79 chr9:37339654-37339754 1.2e-07 35_[-2]_50 chr1:63770092-63770192 1.2e-07 12_[-2]_73 chr19:13763452-13763552 1.4e-07 24_[-2]_61 chr12:81077733-81077833 1.4e-07 53_[+2]_32 chr13:23454578-23454678 3e-07 12_[-2]_73 chr4:106476109-106476209 3.6e-07 49_[+2]_36 chr2:214991674-214991774 3.6e-07 7_[+2]_78 chr16:29719997-29720097 4.3e-07 29_[-2]_56 chr6:133490795-133490895 6.6e-07 18_[+2]_67 chr2:8820801-8820901 7.4e-07 41_[+2]_44 chr12:77266046-77266146 8.5e-07 24_[-2]_61 chr18:57531223-57531323 1.3e-06 51_[-2]_34 chr6:49309354-49309454 1.3e-06 34_[+2]_51 chr6:164765617-164765717 1.6e-06 49_[+2]_36 chr10:90462586-90462686 1.6e-06 60_[+2]_25 chr2:144649277-144649377 1.8e-06 58_[+2]_27 chr7:128898322-128898422 1.8e-06 39_[+2]_46 chr20:5950038-5950138 2.1e-06 21_[+2]_64 chr7:115456226-115456326 2.1e-06 11_[+2]_74 chr13:94796031-94796131 2.1e-06 59_[-2]_26 chr5:143390507-143390607 3.1e-06 18_[-2]_67 chr8:32314721-32314821 3.1e-06 52_[-2]_33 chr17:49990166-49990266 4e-06 54_[-2]_31 chr4:171805766-171805866 4e-06 68_[-2]_17 chr7:76302541-76302641 4.4e-06 67_[+2]_18 chr4:185114480-185114580 5e-06 57_[-2]_28 chr12:119059937-11906003 5e-06 16_[+2]_69 chr4:160304179-160304279 5e-06 46_[+2]_39 chrX:39473012-39473112 5.6e-06 59_[+2]_26 chr11:31263927-31264027 5.6e-06 56_[+2]_29 chr13:72333753-72333853 6.3e-06 70_[-2]_15 chr4:163084841-163084941 7.1e-06 20_[-2]_65 chr8:129994481-129994581 8e-06 45_[-2]_40 chr4:140074652-140074752 8.9e-06 47_[+2]_38 chr9:75294882-75294982 8.9e-06 5_[-2]_80 chr10:89384945-89385045 8.9e-06 83_[-2]_2 chr2:179076535-179076635 1.1e-05 41_[+2]_44 chr11:12885446-12885546 1.1e-05 50_[+2]_35 chr7:113792283-113792383 1.1e-05 50_[+2]_35 chr5:90680312-90680412 1.2e-05 35_[+2]_50 chr7:110736700-110736800 1.2e-05 80_[-2]_5 chr11:22355066-22355166 1.2e-05 60_[+2]_25 chr6:122773345-122773445 1.2e-05 46_[+2]_39 chr6:99084724-99084824 1.2e-05 1_[+2]_84 chr7:41848038-41848138 1.4e-05 32_[+2]_53 chr7:32720072-32720172 1.4e-05 9_[-2]_76 chr2:200733237-200733337 1.4e-05 6_[-2]_79 chr10:60966237-60966337 1.4e-05 58_[-2]_27 chr9:10921319-10921419 1.5e-05 25_[-2]_60 chr4:74850736-74850836 1.7e-05 19_[-2]_66 chr3:181433353-181433453 1.7e-05 35_[+2]_50 chr14:96414317-96414417 1.8e-05 80_[-2]_5 chr7:7936939-7937039 1.8e-05 35_[+2]_50 chr1:178252221-178252321 1.8e-05 67_[-2]_18 chr12:28612996-28613096 1.8e-05 2_[+2]_83 chr18:60544047-60544147 2.2e-05 15_[-2]_70 chr18:25141367-25141467 2.2e-05 [+2]_85 chr14:79329159-79329259 2.4e-05 82_[-2]_3 chr17:65748239-65748339 2.4e-05 84_[+2]_1 chr1:183603054-183603154 2.4e-05 13_[+2]_72 chr1:73012908-73013008 2.7e-05 17_[-2]_68 chr17:69028790-69028890 2.7e-05 24_[+2]_61 chr3:78524918-78525018 2.7e-05 [+2]_85 chr8:5023370-5023470 2.9e-05 3_[-2]_82 chr7:43331053-43331153 3.2e-05 13_[+2]_72 chr4:5200585-5200685 3.2e-05 43_[-2]_42 chr1:69542718-69542818 3.2e-05 7_[+2]_78 chr3:2344959-2345059 3.5e-05 81_[+2]_4 chr10:115472392-11547249 3.5e-05 41_[-2]_44 chr8:70888984-70889084 3.5e-05 3_[-2]_82 chr18:56179199-56179299 3.5e-05 35_[-2]_50 chr11:76653143-76653243 4.1e-05 23_[-2]_62 chr4:189320774-189320874 4.1e-05 53_[-2]_32 chr7:84541000-84541100 4.1e-05 27_[+2]_58 chr18:4119127-4119227 4.5e-05 63_[-2]_22 chr18:48943853-48943953 4.5e-05 75_[+2]_10 chr8:128055732-128055832 4.9e-05 76_[+2]_9 chr6:21691973-21692073 5.3e-05 59_[-2]_26 chr16:26610628-26610728 5.7e-05 54_[+2]_31 chr6:55845325-55845425 5.7e-05 61_[-2]_24 chr13:29003910-29004010 6.2e-05 19_[+2]_66 chr20:6745158-6745258 6.2e-05 39_[+2]_46 chr16:30689234-30689334 6.2e-05 44_[+2]_41 chr14:41085107-41085207 7.2e-05 22_[+2]_63 chr21:20492736-20492836 7.2e-05 6_[+2]_79 chr19:14869500-14869600 7.7e-05 41_[-2]_44 chr17:47841480-47841580 8.3e-05 43_[+2]_42 chr11:94382988-94383088 9e-05 64_[-2]_21 chr2:162225712-162225812 9.6e-05 43_[+2]_42 chr4:69269617-69269717 0.00011 55_[-2]_30 chr6:31587305-31587405 0.00029 36_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTVWTATGCAAATK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTTVWTATGCAAATK width=15 seqs=103 chr18:33407230-33407330 ( 55) TTTGTTATGCAAATT 1 chrX:27075892-27075992 ( 16) TTTATTATGCAAATG 1 chr12:23738259-23738359 ( 80) TTTATTATGCAAATG 1 chr6:168609303-168609403 ( 55) TTTAATATGCAAATG 1 chr2:203114473-203114573 ( 86) TTTAATATGCAAATG 1 chr8:124491623-124491723 ( 38) TTTAATATGCAAATG 1 chr6:49306455-49306555 ( 3) ATTATTATGCAAATT 1 chr12:119418210-11941831 ( 21) TTTGTTATGCAGATG 1 chr7:101218237-101218337 ( 17) TTTGTTATGCAGATG 1 chr8:40177060-40177160 ( 74) TTTGTTATGCTAATG 1 chr8:59461213-59461313 ( 56) TTTGTTATGCTAATG 1 chr1:220511927-220512027 ( 7) TTTGTTATGCAGATT 1 chr9:37339654-37339754 ( 36) TTTTTTATGCAAATG 1 chr1:63770092-63770192 ( 13) TTTGTTATGTAAATT 1 chr19:13763452-13763552 ( 25) TTTATTATGCAGATG 1 chr12:81077733-81077833 ( 54) TTTATTATGCAGATG 1 chr13:23454578-23454678 ( 13) TTTGAGATGCAAATT 1 chr4:106476109-106476209 ( 50) ATTATTATGCAGATG 1 chr2:214991674-214991774 ( 8) TTTCTTATGTAAATT 1 chr16:29719997-29720097 ( 30) TTTAAGATGCAAATG 1 chr6:133490795-133490895 ( 19) ATTCTTATGCAAATC 1 chr2:8820801-8820901 ( 42) TTCAATATGCAAATT 1 chr12:77266046-77266146 ( 25) TTTAGTATGCAAATG 1 chr18:57531223-57531323 ( 52) ATTGTTATGTAGATG 1 chr6:49309354-49309454 ( 35) TTTTATATGTAAATG 1 chr6:164765617-164765717 ( 50) ATTGAAATGTAAATG 1 chr10:90462586-90462686 ( 61) GTTGTTATGCAAATA 1 chr2:144649277-144649377 ( 59) TTAATTATGCTAATT 1 chr7:128898322-128898422 ( 40) ATTATAATGTAAATG 1 chr20:5950038-5950138 ( 22) TTTAATATGTTAATT 1 chr7:115456226-115456326 ( 12) ATTATAATGCAAATC 1 chr13:94796031-94796131 ( 60) TTACATATGCAAATA 1 chr5:143390507-143390607 ( 19) ATTGAGATGTAAATT 1 chr8:32314721-32314821 ( 53) ATTGTCATGTAAATG 1 chr17:49990166-49990266 ( 55) AGAGATATGCAAATT 1 chr4:171805766-171805866 ( 69) ATACTTATGCTAATT 1 chr7:76302541-76302641 ( 68) TTTATTATGCAGACG 1 chr4:185114480-185114580 ( 58) TTCCATATGCTAATT 1 chr12:119059937-11906003 ( 17) TTCCATATGCAAATC 1 chr4:160304179-160304279 ( 47) TTTGTTATGGTAATT 1 chrX:39473012-39473112 ( 60) TTAGAAATGCAAATC 1 chr11:31263927-31264027 ( 57) TGAGTTATGCAAATA 1 chr13:72333753-72333853 ( 71) ATTTTAATGCAGATT 1 chr4:163084841-163084941 ( 21) GTTGATATGCAAAAT 1 chr8:129994481-129994581 ( 46) AATTTTATGCAAATG 1 chr4:140074652-140074752 ( 48) TGTAAAATGCAGATT 1 chr9:75294882-75294982 ( 6) TTAGAGATGCTAATT 1 chr10:89384945-89385045 ( 84) TTACAAATGCAGATT 1 chr2:179076535-179076635 ( 42) TGTGTCATGCTAATG 1 chr11:12885446-12885546 ( 51) GTTGAGATGCAAATA 1 chr7:113792283-113792383 ( 51) TTGCATATGCAAATC 1 chr5:90680312-90680412 ( 36) ATAAATATGCAAACT 1 chr7:110736700-110736800 ( 81) TTTTTTATGCAAACA 1 chr11:22355066-22355166 ( 61) TTTCAGATGTAGATT 1 chr6:122773345-122773445 ( 47) TTTTCTATGTAAATT 1 chr6:99084724-99084824 ( 2) ATTGTAATGCAGAAT 1 chr7:41848038-41848138 ( 33) ATTGTCATGGAAATT 1 chr7:32720072-32720172 ( 10) TTTAGTATGCTAATA 1 chr2:200733237-200733337 ( 7) ATTCAAATGTTAATT 1 chr10:60966237-60966337 ( 59) AGTATTATGTTAATG 1 chr9:10921319-10921419 ( 26) TTTGTAATGCATATC 1 chr4:74850736-74850836 ( 20) ATCCATATGCAAAAT 1 chr3:181433353-181433453 ( 36) ATTGTAATGCATATA 1 chr14:96414317-96414417 ( 81) ATTAAAATGAAAATT 1 chr7:7936939-7937039 ( 36) ATACATATGTTAATT 1 chr1:178252221-178252321 ( 68) TTTCAAATGTAAAAT 1 chr12:28612996-28613096 ( 3) ACTATCATGCAAATG 1 chr18:60544047-60544147 ( 16) TTCACTATGCTAATG 1 chr18:25141367-25141467 ( 1) AGTGTAATGCAAACG 1 chr14:79329159-79329259 ( 83) ATACTAATGCAAAAT 1 chr17:65748239-65748339 ( 85) ATTCAAATGCAGAAT 1 chr1:183603054-183603154 ( 14) GATGTAATGCAAATG 1 chr1:73012908-73013008 ( 18) TCAATTATGCTAATG 1 chr17:69028790-69028890 ( 25) TTTGTTATGGAAAAA 1 chr3:78524918-78525018 ( 1) TTTATTATGAAGATA 1 chr8:5023370-5023470 ( 4) TGTAAAATGTAGATT 1 chr7:43331053-43331153 ( 14) TTATAGATGTAAATT 1 chr4:5200585-5200685 ( 44) AAAGATATGCTAATG 1 chr1:69542718-69542818 ( 8) TTATAGATGTAAATT 1 chr3:2344959-2345059 ( 82) ATTTATATGCTTATT 1 chr10:115472392-11547249 ( 42) TGCCCTATGCAAATG 1 chr8:70888984-70889084 ( 4) TTTGTTAAGTAAATT 1 chr18:56179199-56179299 ( 36) TTGTCTATGCAAATG 1 chr11:76653143-76653243 ( 24) AAACATATGCAAATA 1 chr4:189320774-189320874 ( 54) TATCTTATGCAAAAA 1 chr7:84541000-84541100 ( 28) TTTCTTATGTTAAAA 1 chr18:4119127-4119227 ( 64) GTTCAAATGCAGATC 1 chr18:48943853-48943953 ( 76) ATAGACATGCAAACT 1 chr8:128055732-128055832 ( 77) ATTGTGATGATAATT 1 chr6:21691973-21692073 ( 60) TTTATCATGAAGATT 1 chr16:26610628-26610728 ( 55) ATGGGTATGCAAATC 1 chr6:55845325-55845425 ( 62) ATTAATATGGAAAAA 1 chr13:29003910-29004010 ( 20) ACTGTTATGGAAATA 1 chr20:6745158-6745258 ( 40) ATTTTAATGTTGATT 1 chr16:30689234-30689334 ( 45) TCGGTGATGCAAATG 1 chr14:41085107-41085207 ( 23) TGAATAATGCATATG 1 chr21:20492736-20492836 ( 7) ATTATCATGCTAAAA 1 chr19:14869500-14869600 ( 42) AGCCTTATGTAAATC 1 chr17:47841480-47841580 ( 44) GGTAGTATGCAAATA 1 chr11:94382988-94383088 ( 65) TATTCTATGTAAATG 1 chr2:162225712-162225812 ( 44) TTCAATATGCATACT 1 chr4:69269617-69269717 ( 56) TGTAAGATGTATATT 1 chr6:31587305-31587405 ( 37) TTCGTCGTGTAAATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTVWTATGCAAATK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 50310 bayes= 10.5558 E= 1.9e-057 33 -1333 -188 103 -229 -246 -88 146 -71 -129 -246 129 21 -7 71 -129 44 -214 -246 88 -49 -146 -100 110 179 -1333 -446 -1333 -488 -1333 -1333 179 -1333 -1333 222 -1333 -288 164 -214 -24 148 -1333 -1333 -49 141 -1333 -22 -229 181 -1333 -1333 -1333 -142 -188 -1333 155 -88 -129 67 55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTVWTATGCAAATK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 103 E= 1.9e-057 0.359223 0.000000 0.058252 0.582524 0.058252 0.038835 0.116505 0.786408 0.174757 0.087379 0.038835 0.699029 0.330097 0.203883 0.349515 0.116505 0.388350 0.048544 0.038835 0.524272 0.203883 0.077670 0.106796 0.611650 0.990291 0.000000 0.009709 0.000000 0.009709 0.000000 0.000000 0.990291 0.000000 0.000000 1.000000 0.000000 0.038835 0.669903 0.048544 0.242718 0.796117 0.000000 0.000000 0.203883 0.757282 0.000000 0.184466 0.058252 1.000000 0.000000 0.000000 0.000000 0.106796 0.058252 0.000000 0.834951 0.155340 0.087379 0.339806 0.417476 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTVWTATGCAAATK MEME-2 regular expression -------------------------------------------------------------------------------- [TA]TT[GAC][TA][TA]ATG[CT][AT]AAT[TG] -------------------------------------------------------------------------------- Time 547.20 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGSSSSGGGMBGNGSBVSGSDGBGGGVGV MEME-3 width = 30 sites = 71 llr = 855 E-value = 7.4e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGSSSSGGGMBGNGSBVSGSDGBGGGVGV MEME-3 Description -------------------------------------------------------------------------------- Simplified A 11212:121:4122111313:311::2312 pos.-specific C 111335321143122434423:33132423 probability G 8865536668:4645333455464776264 matrix T 1:1::2:12:121222311:121221:1:: bits 2.2 2.0 1.8 1.6 Relative 1.3 * Entropy 1.1 ** * * (17.4 bits) 0.9 ** * *** * 0.7 **** ***** * * * *** * 0.4 *********** * ** *** * *** ** 0.2 ****************************** 0.0 ------------------------------ Multilevel GGGGGCGGGGAGGGGCGCGGGGGGGGGCGG consensus ACCGC CC C GTACACACCTC ACC sequence A A CG C T T G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSSSSGGGMBGNGSBVSGSDGBGGGVGV MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr11:66185393-66185493 + 13 1.41e-10 GCTGGCAGCA GGGCGGGGGGAAGCGCTCGCTTGGGGGCCG GCAACGGGGG chrX:199827-199927 + 42 4.26e-10 GGGTGGGGGC GGCCGTGGTGCCAGGCCCGGGTGGGGGCGG CCGTGTTGCC chr15:84115497-84115597 - 60 1.04e-09 CTGGGAAGCT GGGCGTGGGGATGTCCTGGGGGTCGGGGGA GTACAGTCAC chr19:7627379-7627479 - 40 1.86e-09 GAGATCTGGA GGGCGCAGGGATATCGGCGGGGGTGGGGGG GCTTGGAGGG chr19:45873395-45873495 - 34 2.46e-09 AGTGAGAAGG GGGCTGGGGGTCGCGCTCGCTAGCGGGCGC GGGGGGTCTT chr5:151303485-151303585 + 25 2.83e-09 GATGTTAAAG GGAGGCGGGGAACAGGGGCGCGGAGGGAGA GCCCCAGGGG chr1:2457491-2457591 - 1 4.90e-09 CGAGACCTCA GAGGCCGGGGGTGGGGGAGGGAAGGGGCGG chr19:39902609-39902709 - 32 4.90e-09 TTCCCGCCTG CGGGGGGGGGAGGGGCTGCCTTCCGGCCGA CCCGCCAGCG chr9:140772769-140772869 - 52 5.61e-09 AGGGCCCCGA GGGGAGGGGGCCGAGCGCCCCCAGGCGAGG CTGGAGGGAG chr12:119418210-11941831 + 70 1.59e-08 GGAGGGGGTT GGTGGGGAGGAGGAGAGACGGAGAGGGGGG A chr2:98962685-98962785 + 22 1.81e-08 ATTTTTTGGG GGGCGCCGGGAGGTGTGCTGGGGCCGCAGA CCCCATACAG chr18:34849109-34849209 + 64 2.32e-08 TCTGCCTCCA GGAAGCGGGGCGGCACTCCACATCGGGAGC ACATTTC chr5:161494968-161495068 + 1 2.63e-08 . GGAGCTGGGGGGAGGGGCGGCGGGCGGCCC TGTTCCTGTG chr8:41753313-41753413 - 71 2.98e-08 . GCGCGGCGCCCGGTGCGGCGGAGTTGGCGG CACCCGAGCG chr1:230562015-230562115 + 48 3.80e-08 GGTGCTTCCA GCGGTCCGGGCCCGCGGACGGAGTGCGGGC CGATCCCGCT chr6:31587305-31587405 - 67 4.83e-08 TTGA GGGGGCGGGAATGCGGTGCAGGTCGGCTGG GCGGTTGGGA chr20:32890632-32890732 + 26 5.45e-08 AGCCCCGGGC GGGTGCCGGGCGGCCGCAACCGGCTGCAGG TCCTGGGACT chr1:210110809-210110909 + 11 5.45e-08 CGAGCTCGGC GCGCTTCGGGCGGGTCTCGGGCGCGGGCCC GTGGCTCTCC chr9:34458349-34458449 - 61 6.13e-08 GGCCCGGAAA GGAGGCGGGGTTGGGCGCGCGGCGAGCGAG TCTCCACTAA chr21:34143404-34143504 + 9 7.75e-08 TCCACACC GCGGCCCCGGCAGCGCCGAGCTCGTGACGG CGCACGCGCG chr7:154861370-154861470 + 29 7.75e-08 ATGTGGTGGC GCACACTGGGAGCCGCCAGGCGCGGGGAGC GCAGCAGCAC chr19:15126503-15126603 + 71 8.71e-08 GGAGAAGAAG GGACAGGCTGAGGGTCGAGGGTGTGGACGA chr22:37098854-37098954 + 71 1.10e-07 TGGAAACGAG GGAGCCGGCGTCTTGCTGCAGGGTGGGCCG chr5:175297946-175298046 - 42 1.10e-07 CAGGCGAGCT GGAGCCGCGGCTTCTGCCGCGGGCGGCTGC CGAAGGCGCC chr19:18632758-18632858 - 18 1.54e-07 ACTATGGAGG CGGGGCCTGGAGGGGTGCGCGTGTTGAGGC GGAGTTCGTT chr17:47841480-47841580 + 69 1.54e-07 TAATGTCACG TGACGTCAGGCTGAGCTGGAGAGTGGGCGC GG chr9:136324534-136324634 - 32 2.15e-07 TCATTATTGT AGGGGGCGGGACCCGCAGGCTGCGGCGAGG AGCTGGGGGT chr22:39638778-39638878 + 64 2.67e-07 ACCGTGCTCT GGGGCCGGGCATGCCCTGCGCGTGCCGGAG GGCGTCC chr19:46455707-46455807 + 15 2.98e-07 GCATGCATAG GGGAGTGGGGACGGGAGAGAAAACGGGAGC CAGCCCCGCG chr11:115374839-11537493 + 3 4.11e-07 CT AGGGGCGGGGCCAAGGGGAGGGGCGTATGC AAATATGTTT chr17:72667220-72667320 - 48 5.07e-07 AGCGCTTCCA GGAGCTCGGTTCGAGCTCCGCTGGGTGCGG CAGGCTTGGG chr3:9593745-9593845 - 37 5.07e-07 TTCCACTACT GCGTGGGCAGCGGGCTGGCGGGCCGCGAGC TCACCTGCCG chr18:44786420-44786520 + 11 5.07e-07 GCCCAGTGGT TGGGCCGGAGACGGGGCTAGGGGTGCACCC TTCGTCCCGG chr12:57634588-57634688 - 55 6.92e-07 GCTCAGCTGG GCTGGGGAAGAGGAGGCCTGGGACGGGCGC GCCCCCCTTC chr17:77290449-77290549 + 71 7.66e-07 AGACGCTGCC AGCCACGCGGCCGAACTCCGGACTGGGGGC chr11:22359014-22359114 - 49 8.48e-07 CTCATTGGAA GGGGAGGATCCGGTGGCAAAGAGCGCAAGC AGTGCCACGG chr2:200733237-200733337 - 55 9.39e-07 GAAAAAGGAA GGAAGGAAGGAAGGGAGGGAGGGAGGGAGG GAAGAGTTCT chr5:171435434-171435534 - 69 9.39e-07 TG TGGGCCCCGGCTGAGCCCGGGTCAGCCCAC ACAATTGTAA chr8:72466111-72466211 + 10 1.15e-06 agagggaga gggaCTGGGGTCGCCCGCAGGTCTGTGGCG ACTTGGGAGG chr8:124491623-124491723 - 6 1.27e-06 TGCAAATGCA GGGCACCATGATGTTCTACACACGTGGGGA TACGT chr14:36004079-36004179 + 18 1.27e-06 GGACAGCTCC GGGGCGGATCAGCACCCGGACAGCGCCCCG AGGCAGGGCC chrX:153140422-153140522 + 39 1.27e-06 GCCCAGGAAA GGCCAGGGAGAGGAGTCAGGGTCCGGAACA GGGAGAAGGT chr4:8581862-8581962 - 67 1.40e-06 GGAG CAGCCCGGGGCCGCCCTGGAGGCAGCGCAA CCGCGGTGCT chr10:120355293-12035539 + 71 1.54e-06 TGGAGTGGAG GCAGCTGAGCCGGGGGCCTGGGGGTCGGAG chr8:57357747-57357847 - 15 1.87e-06 GCGACTATCT GGGGACCGGTAAGGGTAGCGGTGTCGCCGC ACAAACCAAG chr19:15125115-15125215 + 54 2.06e-06 ggagaagaag ggacaggctgggggacgagggtgtggacga ggcaggagac chr14:93389383-93389483 - 47 2.27e-06 CCCAGGCGGA GGCCACACTGCAGGGTCAGGCGGGAGGCGG AGGCGCTGTC chr17:38219103-38219203 - 39 2.49e-06 TGCAAGCTCC CGGGCTCGTGACAGGGTCACTGGGGCGCCA GGAAAGGCTG chr19:18303588-18303688 + 24 2.49e-06 ATTGGTCCGT GAAGCTCGGGAGGTCGTTGGGGGCTCGACC TTGGGATAGA chr6:50791765-50791865 - 21 2.74e-06 AGTGTTAATA TAGGCGGAGGCCAGGAGAGGGAGGTGGAGA ATATTACACT chr7:51394210-51394310 - 36 2.74e-06 GCCTGCCTCT GGGGGCCCGGCACACATGGGCTCTGGAGCA CCCCGACTTG chr3:186716299-186716399 - 43 3.01e-06 CCCCCTTCCT GGTCGGCTGGCAGTTGGCCACAGTGGGAAG AGGAGGGAGA chr1:37720702-37720802 + 43 3.01e-06 GAGCCATTTT CGGGCGAAGCCAGGGGCCCACGTGGGAGGG AGCTCCAGGA chr2:123418522-123418622 - 62 3.30e-06 CCCAGAGAG GCGGACCAGGCTGCCCCAAAGGGAGCAGCC AGATGCAGGA chr7:8481378-8481478 - 11 4.35e-06 AGGTCATGCT GGGGACCTAGAGACGGGAGCTAGCTGCCCC CCGAATAGCT chr11:57092206-57092306 - 57 4.77e-06 ATTGAGTGCT GGGCCGCGCCTGTTTGCCGACGGTGGGACG AATTCTGCAC chr1:32253609-32253709 - 10 5.22e-06 GCTAGGCTCC AGGGACGTTGCTATGCAACGCTGGGCGGGG CTTGTTGTT chr2:62581823-62581923 - 69 5.22e-06 TA GGCAGCGGGCAAGGTGAACCTGTTGGGCGG TTACATTATC chr3:185826658-185826758 - 9 8.87e-06 AGACCCCTGA GGGGGTGGAGAGAGATGCACCGCTGGCCAA TGGGGGCC chr14:66392991-66393091 - 68 9.67e-06 ACA GGGCGCCATAATGTTCTACACACGTGGGGA TATGTGGGGG chr8:50823846-50823946 - 23 9.67e-06 CTGAAGTAAG GGGACGGGAGCCCCTAAGCGCAGGTCCAGG TCGCACTTTC chr19:4768762-4768862 - 65 1.05e-05 CCCGCT GGGAACTGTCCTGAGCCCCGGTGCTGAAAC AGATCGCGGT chr19:18343373-18343473 - 52 1.48e-05 AGCGCTATAG GGGACGGCAGACGGTTTTCGGGGCTGGTGT GTTGGGGGGG chr20:44657853-44657953 + 4 1.48e-05 CCC GGGCGGTGGGCGCCAGTTGCAGCCTGGAGC TCAGCTCCAT chr9:138863613-138863713 - 13 2.42e-05 GAAAGGACTC CAGCCTGGAGCGTGGCCAGGCTAGGGGCGT TTCAGCACCT chr12:131432529-13143262 - 12 3.60e-05 ATGAGCTTGA GGAGGCGGTGTCGATTTACATAGGGTGTAG TGGATTGGTT chr22:37654693-37654793 - 37 4.20e-05 TCTTCGGAAC ACGGGCGCGGAGCTTCTGCAAACCGGCCAG AACTGGTCCG chr4:70333414-70333514 + 30 4.20e-05 gttatctgga ggtggccgtgacacttcctacacgtggtga caagaaaaag chr6:25652128-25652228 + 69 7.12e-05 GACAGCTCCC GGGAACCGACTCTGGGGCGCTTGGACGCCG CT chr5:16178748-16178848 - 71 9.52e-05 . GGTGGCGGCTCCAGCTCGCGCCGGTCAAGC TTTCAGCACC chr1:155214241-155214341 + 6 1.56e-04 gGAGC CGGCGCGAGAACTACGCATGCGTGTCGGCG TTTTCCCGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSSSSGGGMBGNGSBVSGSDGBGGGVGV MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:66185393-66185493 1.4e-10 12_[+3]_58 chrX:199827-199927 4.3e-10 41_[+3]_29 chr15:84115497-84115597 1e-09 59_[-3]_11 chr19:7627379-7627479 1.9e-09 39_[-3]_31 chr19:45873395-45873495 2.5e-09 33_[-3]_37 chr5:151303485-151303585 2.8e-09 24_[+3]_46 chr1:2457491-2457591 4.9e-09 [-3]_70 chr19:39902609-39902709 4.9e-09 31_[-3]_39 chr9:140772769-140772869 5.6e-09 51_[-3]_19 chr12:119418210-11941831 1.6e-08 69_[+3]_1 chr2:98962685-98962785 1.8e-08 21_[+3]_49 chr18:34849109-34849209 2.3e-08 63_[+3]_7 chr5:161494968-161495068 2.6e-08 [+3]_70 chr8:41753313-41753413 3e-08 70_[-3] chr1:230562015-230562115 3.8e-08 47_[+3]_23 chr6:31587305-31587405 4.8e-08 66_[-3]_4 chr20:32890632-32890732 5.4e-08 25_[+3]_45 chr1:210110809-210110909 5.4e-08 10_[+3]_60 chr9:34458349-34458449 6.1e-08 60_[-3]_10 chr21:34143404-34143504 7.8e-08 8_[+3]_62 chr7:154861370-154861470 7.8e-08 28_[+3]_42 chr19:15126503-15126603 8.7e-08 70_[+3] chr22:37098854-37098954 1.1e-07 70_[+3] chr5:175297946-175298046 1.1e-07 41_[-3]_29 chr19:18632758-18632858 1.5e-07 17_[-3]_53 chr17:47841480-47841580 1.5e-07 68_[+3]_2 chr9:136324534-136324634 2.1e-07 31_[-3]_39 chr22:39638778-39638878 2.7e-07 63_[+3]_7 chr19:46455707-46455807 3e-07 14_[+3]_56 chr11:115374839-11537493 4.1e-07 2_[+3]_68 chr17:72667220-72667320 5.1e-07 47_[-3]_23 chr3:9593745-9593845 5.1e-07 36_[-3]_34 chr18:44786420-44786520 5.1e-07 10_[+3]_60 chr12:57634588-57634688 6.9e-07 54_[-3]_16 chr17:77290449-77290549 7.7e-07 70_[+3] chr11:22359014-22359114 8.5e-07 48_[-3]_22 chr2:200733237-200733337 9.4e-07 54_[-3]_16 chr5:171435434-171435534 9.4e-07 68_[-3]_2 chr8:72466111-72466211 1.1e-06 9_[+3]_61 chr8:124491623-124491723 1.3e-06 5_[-3]_65 chr14:36004079-36004179 1.3e-06 17_[+3]_53 chrX:153140422-153140522 1.3e-06 38_[+3]_32 chr4:8581862-8581962 1.4e-06 66_[-3]_4 chr10:120355293-12035539 1.5e-06 70_[+3] chr8:57357747-57357847 1.9e-06 14_[-3]_56 chr19:15125115-15125215 2.1e-06 53_[+3]_17 chr14:93389383-93389483 2.3e-06 46_[-3]_24 chr17:38219103-38219203 2.5e-06 38_[-3]_32 chr19:18303588-18303688 2.5e-06 23_[+3]_47 chr6:50791765-50791865 2.7e-06 20_[-3]_50 chr7:51394210-51394310 2.7e-06 35_[-3]_35 chr3:186716299-186716399 3e-06 42_[-3]_28 chr1:37720702-37720802 3e-06 42_[+3]_28 chr2:123418522-123418622 3.3e-06 61_[-3]_9 chr7:8481378-8481478 4.4e-06 10_[-3]_60 chr11:57092206-57092306 4.8e-06 56_[-3]_14 chr1:32253609-32253709 5.2e-06 9_[-3]_61 chr2:62581823-62581923 5.2e-06 68_[-3]_2 chr3:185826658-185826758 8.9e-06 8_[-3]_62 chr14:66392991-66393091 9.7e-06 67_[-3]_3 chr8:50823846-50823946 9.7e-06 22_[-3]_48 chr19:4768762-4768862 1.1e-05 64_[-3]_6 chr19:18343373-18343473 1.5e-05 51_[-3]_19 chr20:44657853-44657953 1.5e-05 3_[+3]_67 chr9:138863613-138863713 2.4e-05 12_[-3]_58 chr12:131432529-13143262 3.6e-05 11_[-3]_59 chr22:37654693-37654793 4.2e-05 36_[-3]_34 chr4:70333414-70333514 4.2e-05 29_[+3]_41 chr6:25652128-25652228 7.1e-05 68_[+3]_2 chr5:16178748-16178848 9.5e-05 70_[-3] chr1:155214241-155214341 0.00016 5_[+3]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSSSSGGGMBGNGSBVSGSDGBGGGVGV MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGSSSSGGGMBGNGSBVSGSDGBGGGVGV width=30 seqs=71 chr11:66185393-66185493 ( 13) GGGCGGGGGGAAGCGCTCGCTTGGGGGCCG 1 chrX:199827-199927 ( 42) GGCCGTGGTGCCAGGCCCGGGTGGGGGCGG 1 chr15:84115497-84115597 ( 60) GGGCGTGGGGATGTCCTGGGGGTCGGGGGA 1 chr19:7627379-7627479 ( 40) GGGCGCAGGGATATCGGCGGGGGTGGGGGG 1 chr19:45873395-45873495 ( 34) GGGCTGGGGGTCGCGCTCGCTAGCGGGCGC 1 chr5:151303485-151303585 ( 25) GGAGGCGGGGAACAGGGGCGCGGAGGGAGA 1 chr1:2457491-2457591 ( 1) GAGGCCGGGGGTGGGGGAGGGAAGGGGCGG 1 chr19:39902609-39902709 ( 32) CGGGGGGGGGAGGGGCTGCCTTCCGGCCGA 1 chr9:140772769-140772869 ( 52) GGGGAGGGGGCCGAGCGCCCCCAGGCGAGG 1 chr12:119418210-11941831 ( 70) GGTGGGGAGGAGGAGAGACGGAGAGGGGGG 1 chr2:98962685-98962785 ( 22) GGGCGCCGGGAGGTGTGCTGGGGCCGCAGA 1 chr18:34849109-34849209 ( 64) GGAAGCGGGGCGGCACTCCACATCGGGAGC 1 chr5:161494968-161495068 ( 1) GGAGCTGGGGGGAGGGGCGGCGGGCGGCCC 1 chr8:41753313-41753413 ( 71) GCGCGGCGCCCGGTGCGGCGGAGTTGGCGG 1 chr1:230562015-230562115 ( 48) GCGGTCCGGGCCCGCGGACGGAGTGCGGGC 1 chr6:31587305-31587405 ( 67) GGGGGCGGGAATGCGGTGCAGGTCGGCTGG 1 chr20:32890632-32890732 ( 26) GGGTGCCGGGCGGCCGCAACCGGCTGCAGG 1 chr1:210110809-210110909 ( 11) GCGCTTCGGGCGGGTCTCGGGCGCGGGCCC 1 chr9:34458349-34458449 ( 61) GGAGGCGGGGTTGGGCGCGCGGCGAGCGAG 1 chr21:34143404-34143504 ( 9) GCGGCCCCGGCAGCGCCGAGCTCGTGACGG 1 chr7:154861370-154861470 ( 29) GCACACTGGGAGCCGCCAGGCGCGGGGAGC 1 chr19:15126503-15126603 ( 71) GGACAGGCTGAGGGTCGAGGGTGTGGACGA 1 chr22:37098854-37098954 ( 71) GGAGCCGGCGTCTTGCTGCAGGGTGGGCCG 1 chr5:175297946-175298046 ( 42) GGAGCCGCGGCTTCTGCCGCGGGCGGCTGC 1 chr19:18632758-18632858 ( 18) CGGGGCCTGGAGGGGTGCGCGTGTTGAGGC 1 chr17:47841480-47841580 ( 69) TGACGTCAGGCTGAGCTGGAGAGTGGGCGC 1 chr9:136324534-136324634 ( 32) AGGGGGCGGGACCCGCAGGCTGCGGCGAGG 1 chr22:39638778-39638878 ( 64) GGGGCCGGGCATGCCCTGCGCGTGCCGGAG 1 chr19:46455707-46455807 ( 15) GGGAGTGGGGACGGGAGAGAAAACGGGAGC 1 chr11:115374839-11537493 ( 3) AGGGGCGGGGCCAAGGGGAGGGGCGTATGC 1 chr17:72667220-72667320 ( 48) GGAGCTCGGTTCGAGCTCCGCTGGGTGCGG 1 chr3:9593745-9593845 ( 37) GCGTGGGCAGCGGGCTGGCGGGCCGCGAGC 1 chr18:44786420-44786520 ( 11) TGGGCCGGAGACGGGGCTAGGGGTGCACCC 1 chr12:57634588-57634688 ( 55) GCTGGGGAAGAGGAGGCCTGGGACGGGCGC 1 chr17:77290449-77290549 ( 71) AGCCACGCGGCCGAACTCCGGACTGGGGGC 1 chr11:22359014-22359114 ( 49) GGGGAGGATCCGGTGGCAAAGAGCGCAAGC 1 chr2:200733237-200733337 ( 55) GGAAGGAAGGAAGGGAGGGAGGGAGGGAGG 1 chr5:171435434-171435534 ( 69) TGGGCCCCGGCTGAGCCCGGGTCAGCCCAC 1 chr8:72466111-72466211 ( 10) GGGACTGGGGTCGCCCGCAGGTCTGTGGCG 1 chr8:124491623-124491723 ( 6) GGGCACCATGATGTTCTACACACGTGGGGA 1 chr14:36004079-36004179 ( 18) GGGGCGGATCAGCACCCGGACAGCGCCCCG 1 chrX:153140422-153140522 ( 39) GGCCAGGGAGAGGAGTCAGGGTCCGGAACA 1 chr4:8581862-8581962 ( 67) CAGCCCGGGGCCGCCCTGGAGGCAGCGCAA 1 chr10:120355293-12035539 ( 71) GCAGCTGAGCCGGGGGCCTGGGGGTCGGAG 1 chr8:57357747-57357847 ( 15) GGGGACCGGTAAGGGTAGCGGTGTCGCCGC 1 chr19:15125115-15125215 ( 54) GGACAGGCTGGGGGACGAGGGTGTGGACGA 1 chr14:93389383-93389483 ( 47) GGCCACACTGCAGGGTCAGGCGGGAGGCGG 1 chr17:38219103-38219203 ( 39) CGGGCTCGTGACAGGGTCACTGGGGCGCCA 1 chr19:18303588-18303688 ( 24) GAAGCTCGGGAGGTCGTTGGGGGCTCGACC 1 chr6:50791765-50791865 ( 21) TAGGCGGAGGCCAGGAGAGGGAGGTGGAGA 1 chr7:51394210-51394310 ( 36) GGGGGCCCGGCACACATGGGCTCTGGAGCA 1 chr3:186716299-186716399 ( 43) GGTCGGCTGGCAGTTGGCCACAGTGGGAAG 1 chr1:37720702-37720802 ( 43) CGGGCGAAGCCAGGGGCCCACGTGGGAGGG 1 chr2:123418522-123418622 ( 62) GCGGACCAGGCTGCCCCAAAGGGAGCAGCC 1 chr7:8481378-8481478 ( 11) GGGGACCTAGAGACGGGAGCTAGCTGCCCC 1 chr11:57092206-57092306 ( 57) GGGCCGCGCCTGTTTGCCGACGGTGGGACG 1 chr1:32253609-32253709 ( 10) AGGGACGTTGCTATGCAACGCTGGGCGGGG 1 chr2:62581823-62581923 ( 69) GGCAGCGGGCAAGGTGAACCTGTTGGGCGG 1 chr3:185826658-185826758 ( 9) GGGGGTGGAGAGAGATGCACCGCTGGCCAA 1 chr14:66392991-66393091 ( 68) GGGCGCCATAATGTTCTACACACGTGGGGA 1 chr8:50823846-50823946 ( 23) GGGACGGGAGCCCCTAAGCGCAGGTCCAGG 1 chr19:4768762-4768862 ( 65) GGGAACTGTCCTGAGCCCCGGTGCTGAAAC 1 chr19:18343373-18343473 ( 52) GGGACGGCAGACGGTTTTCGGGGCTGGTGT 1 chr20:44657853-44657953 ( 4) GGGCGGTGGGCGCCAGTTGCAGCCTGGAGC 1 chr9:138863613-138863713 ( 13) CAGCCTGGAGCGTGGCCAGGCTAGGGGCGT 1 chr12:131432529-13143262 ( 12) GGAGGCGGTGTCGATTTACATAGGGTGTAG 1 chr22:37654693-37654793 ( 37) ACGGGCGCGGAGCTTCTGCAAACCGGCCAG 1 chr4:70333414-70333514 ( 30) GGTGGCCGTGACACTTCCTACACGTGGTGA 1 chr6:25652128-25652228 ( 69) GGGAACCGACTCTGGGGCGCTTGGACGCCG 1 chr5:16178748-16178848 ( 71) GGTGGCGGCTCCAGCTCGCGCCGGTCAAGC 1 chr1:155214241-155214341 ( 6) CGGCGCGAGAACTACGCATGCGTGTCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSSSSGGGMBGNGSBVSGSDGBGGGVGV MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 41535 bayes= 10.026 E= 7.4e-046 -202 -112 185 -234 -202 -60 188 -1279 -44 -160 160 -202 -117 60 128 -334 -44 47 107 -276 -1279 124 53 -64 -234 60 143 -276 -64 -47 150 -234 -102 -193 153 -64 -276 -60 185 -276 61 93 -234 -134 -102 53 72 -54 -88 -76 156 -176 -44 16 77 -64 -202 -12 136 -64 -176 103 60 -88 -202 47 60 12 5 77 40 -234 -117 77 103 -202 -17 -2 132 -1279 -276 66 120 -117 -2 -234 103 -26 -202 24 143 -154 -176 53 77 -26 -276 -193 163 -26 -1279 32 166 -234 -64 -23 156 -1279 -2 88 16 -176 -102 7 156 -1279 -44 66 98 -334 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSSSSGGGMBGNGSBVSGSDGBGGGVGV MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 71 E= 7.4e-046 0.070423 0.098592 0.774648 0.056338 0.070423 0.140845 0.788732 0.000000 0.211268 0.070423 0.647887 0.070423 0.126761 0.323944 0.521127 0.028169 0.211268 0.295775 0.450704 0.042254 0.000000 0.507042 0.309859 0.183099 0.056338 0.323944 0.577465 0.042254 0.183099 0.154930 0.605634 0.056338 0.140845 0.056338 0.619718 0.183099 0.042254 0.140845 0.774648 0.042254 0.436620 0.408451 0.042254 0.112676 0.140845 0.309859 0.352113 0.197183 0.154930 0.126761 0.633803 0.084507 0.211268 0.239437 0.366197 0.183099 0.070423 0.197183 0.549296 0.183099 0.084507 0.436620 0.323944 0.154930 0.070423 0.295775 0.323944 0.309859 0.295775 0.366197 0.281690 0.056338 0.126761 0.366197 0.436620 0.070423 0.253521 0.211268 0.535211 0.000000 0.042254 0.338028 0.492958 0.126761 0.281690 0.042254 0.436620 0.239437 0.070423 0.253521 0.577465 0.098592 0.084507 0.309859 0.366197 0.239437 0.042254 0.056338 0.661972 0.239437 0.000000 0.267606 0.676056 0.056338 0.183099 0.183099 0.633803 0.000000 0.281690 0.394366 0.239437 0.084507 0.140845 0.225352 0.633803 0.000000 0.211268 0.338028 0.422535 0.028169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGSSSSGGGMBGNGSBVSGSDGBGGGVGV MEME-3 regular expression -------------------------------------------------------------------------------- GG[GA][GC][GCA][CG][GC]GGG[AC][GC]G[GCA]G[CG][GTC][CAG][GC][GAC][GC][GAT][GC][GCT][GT][GC]G[CAG][GC][GCA] -------------------------------------------------------------------------------- Time 828.33 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:180018626-180018726 2.17e-07 23_[+1(4.04e-11)]_56 chr20:44657853-44657953 2.50e-09 3_[+3(1.48e-05)]_22_[+1(3.72e-11)]_\ 24 chr18:25141367-25141467 7.26e-02 [+2(2.21e-05)]_85 chr9:25204725-25204825 4.25e-01 100 chr9:92049924-92050024 4.33e-01 100 chr6:49309354-49309454 9.10e-03 13_[+2(1.23e-05)]_6_[+2(1.34e-06)]_\ 51 chr3:54222095-54222195 2.84e-01 100 chr8:93062530-93062630 4.85e-01 100 chr2:58766570-58766670 8.11e-01 100 chr16:30689234-30689334 3.39e-03 44_[+2(6.17e-05)]_41 chr14:41754110-41754210 1.09e-01 14_[-1(9.61e-05)]_65 chr1:183603054-183603154 2.86e-02 13_[+2(2.42e-05)]_72 chrX:153140422-153140522 5.86e-04 38_[+3(1.27e-06)]_32 chr11:71162335-71162435 1.59e-01 100 chr10:129355029-12935512 9.63e-02 100 chr2:111445161-111445261 4.64e-01 100 chr8:95447695-95447795 1.94e-01 100 chr3:191109564-191109664 9.89e-01 100 chr6:133490795-133490895 2.85e-04 18_[+2(6.58e-07)]_67 chr6:147759814-147759914 1.62e-01 100 chr3:115333597-115333697 5.93e-01 100 chr6:108500916-108501016 4.64e-01 100 chr5:101022105-101022205 5.54e-01 100 chr13:53424256-53424356 1.83e-01 100 chr1:51165421-51165521 6.93e-01 100 chr13:23454578-23454678 1.53e-03 12_[-2(2.98e-07)]_73 chr5:61370776-61370876 3.50e-01 100 chr9:140772769-140772869 1.69e-05 51_[-3(5.61e-09)]_19 chr17:61993956-61994056 1.30e-01 100 chr2:139802965-139803065 5.22e-01 100 chr4:26031712-26031812 2.96e-01 100 chr6:166778183-166778283 9.45e-01 100 chr6:99084724-99084824 1.02e-02 1_[+2(1.23e-05)]_84 chr5:12330778-12330878 4.06e-01 100 chr11:115374839-11537493 1.44e-05 2_[+3(4.11e-07)]_68 chr8:120437992-120438092 5.73e-01 100 chr1:58065975-58066075 6.04e-01 100 chr13:100338798-10033889 9.64e-02 100 chr3:52201083-52201183 4.07e-02 100 chr6:99105355-99105455 6.30e-01 100 chr6:122773345-122773445 4.95e-02 46_[+2(1.23e-05)]_39 chr19:55727812-55727912 2.03e-09 50_[+1(1.33e-11)]_29 chr19:4768762-4768862 8.59e-04 64_[-3(1.05e-05)]_6 chr4:189029152-189029252 9.62e-01 100 chr19:15126503-15126603 1.05e-04 70_[+3(8.71e-08)] chr14:67957819-67957919 4.98e-02 100 chr11:22355066-22355166 3.66e-02 60_[+2(1.23e-05)]_25 chr19:45873395-45873495 1.41e-05 33_[-3(2.46e-09)]_37 chr6:88407585-88407685 8.03e-01 100 chr9:2158019-2158119 3.56e-01 100 chr5:161494968-161495068 1.83e-05 [+3(2.63e-08)]_70 chr3:76088074-76088174 2.07e-01 100 chr17:40480958-40481058 2.76e-02 100 chr2:77185625-77185725 1.83e-06 47_[+1(4.16e-10)]_32 chr1:200016988-200017088 3.76e-01 100 chr19:36466274-36466374 7.95e-02 100 chr1:63770092-63770192 1.04e-03 12_[-2(1.16e-07)]_73 chr6:142761689-142761789 9.66e-01 100 chr5:165515249-165515349 9.66e-01 100 chr17:35462655-35462755 9.95e-01 100 chr15:92661290-92661390 2.09e-01 100 chr6:3166214-3166314 1.60e-01 100 chr6:135811383-135811483 4.80e-01 100 chr12:23738259-23738359 1.12e-05 79_[-2(1.32e-08)]_6 chr2:147297898-147297998 2.93e-01 100 chr1:7135144-7135244 3.09e-01 100 chr9:34413139-34413239 1.13e-09 32_[+1(9.53e-13)]_47 chr19:5403935-5404035 2.85e-08 57_[+1(8.97e-11)]_22 chr13:43645866-43645966 9.42e-01 100 chr3:113897319-113897419 9.02e-01 100 chr11:27741759-27741859 1.04e-01 100 chr14:93389383-93389483 1.36e-11 24_[-1(9.53e-13)]_1_[-3(2.27e-06)]_\ 24 chr19:15125115-15125215 5.97e-04 38_[+3(6.92e-07)]_32 chr8:129994481-129994581 1.59e-02 45_[-2(7.95e-06)]_40 chr7:113792283-113792383 1.30e-02 50_[+2(1.11e-05)]_35 chr1:37485989-37486089 2.74e-09 16_[+1(8.71e-12)]_63 chr1:200050552-200050652 9.51e-01 100 chr7:137889717-137889817 9.96e-01 100 chr3:76710586-76710686 3.36e-01 100 chr7:154106674-154106774 8.18e-06 58_[+1(2.02e-09)]_21 chr2:149571017-149571117 1.38e-02 10_[-1(7.46e-05)]_69 chr13:94796031-94796131 9.25e-03 59_[-2(2.13e-06)]_26 chr3:78524918-78525018 1.94e-02 [+2(2.66e-05)]_85 chr8:104011554-104011654 4.16e-01 100 chr18:63277921-63278021 7.62e-01 100 chr17:25672149-25672249 1.49e-01 100 chr5:165857791-165857891 5.28e-01 100 chr10:60966237-60966337 1.78e-02 58_[-2(1.36e-05)]_27 chr1:107895022-107895122 7.55e-02 100 chr6:37108872-37108972 3.85e-01 100 chr6:98487461-98487561 7.64e-01 100 chr4:5876906-5877006 3.46e-01 100 chr7:128898322-128898422 3.98e-03 39_[+2(1.84e-06)]_46 chr17:47841480-47841580 1.79e-05 43_[+2(8.33e-05)]_10_[+3(1.54e-07)]_\ 2 chr14:48730056-48730156 7.69e-01 100 chr7:2340782-2340882 3.90e-06 11_[-1(3.00e-08)]_8_[-3(3.60e-05)]_\ 30 chr5:124072204-124072304 4.19e-01 100 chr8:41753313-41753413 8.85e-05 5_[-3(1.27e-06)]_35_[-3(2.98e-08)] chr18:38891422-38891522 4.33e-01 100 chr6:19663385-19663485 3.94e-01 100 chr19:18303588-18303688 1.22e-02 23_[+3(2.49e-06)]_47 chr1:220511927-220512027 1.17e-04 6_[+2(9.07e-08)]_79 chr8:40935062-40935162 4.44e-02 100 chr17:33030519-33030619 2.76e-01 100 chr6:92008155-92008255 2.65e-01 100 chr7:110736700-110736800 2.64e-02 80_[-2(1.23e-05)]_5 chr12:74023708-74023808 7.51e-01 100 chr14:34420269-34420369 7.19e-01 100 chr11:100848818-10084891 8.30e-01 100 chr2:44362337-44362437 7.37e-01 100 chr18:48943853-48943953 1.28e-01 75_[+2(4.48e-05)]_10 chr8:53164655-53164755 1.00e+00 100 chr1:97180921-97181021 8.14e-02 100 chr3:71107874-71107974 5.84e-01 100 chr10:89384945-89385045 4.36e-02 64_[-2(4.48e-05)]_4_[-2(8.93e-06)]_\ 2 chr2:62581823-62581923 4.01e-03 68_[-3(5.22e-06)]_2 chr17:65748239-65748339 3.75e-02 84_[+2(2.42e-05)]_1 chr7:8481378-8481478 1.33e-03 10_[-3(4.35e-06)]_60 chr10:105038475-10503857 6.39e-01 100 chr8:50823303-50823403 8.21e-02 100 chr3:73811709-73811809 4.87e-01 100 chr6:94496248-94496348 2.96e-01 100 chr10:90462586-90462686 5.34e-03 60_[+2(1.56e-06)]_25 chr12:42877892-42877992 9.95e-01 100 chr2:215892414-215892514 9.63e-01 100 chr1:11905498-11905598 3.66e-02 100 chr18:20863630-20863730 1.67e-01 100 chr8:108456884-108456984 6.41e-01 100 chr7:51394210-51394310 5.04e-03 35_[-3(2.74e-06)]_[+3(7.66e-05)]_5 chr15:84115497-84115597 2.92e-06 59_[-3(1.04e-09)]_11 chr6:76829502-76829602 6.84e-01 100 chr2:188089328-188089428 4.24e-01 100 chr6:74275694-74275794 7.97e-01 100 chr4:91751481-91751581 5.39e-01 100 chr16:29719997-29720097 2.55e-03 29_[-2(4.34e-07)]_56 chr18:4119127-4119227 9.14e-03 63_[-2(4.48e-05)]_22 chr20:6745158-6745258 1.21e-01 50_[-2(5.27e-05)]_35 chr4:160304179-160304279 2.40e-02 46_[+2(5.00e-06)]_6_[+2(3.18e-05)]_\ 18 chr3:117041602-117041702 1.39e-01 100 chr14:36004079-36004179 6.84e-04 17_[+3(1.27e-06)]_23_[-3(6.14e-05)] chr11:74925321-74925421 3.40e-01 100 chr2:77748849-77748949 3.39e-01 100 chr7:84541000-84541100 1.23e-01 27_[+2(4.12e-05)]_58 chr3:104238180-104238280 6.29e-01 100 chr2:29516593-29516693 1.20e-01 100 chr4:171805766-171805866 2.31e-02 28_[+2(7.95e-06)]_25_[-2(3.97e-06)]_\ 17 chr16:83453734-83453834 2.10e-06 43_[-1(1.11e-10)]_36 chr12:26265548-26265648 2.85e-01 100 chr12:83591139-83591239 6.42e-01 100 chr14:90961413-90961513 3.97e-01 100 chr4:125794606-125794706 7.61e-01 100 chr20:44655796-44655896 3.04e-01 100 chr14:88830964-88831064 9.30e-02 100 chr3:181433353-181433453 1.13e-02 35_[+2(1.66e-05)]_50 chr2:123418522-123418622 5.85e-04 61_[-3(3.30e-06)]_9 chr14:57361190-57361290 1.01e-01 100 chr9:80149225-80149325 6.97e-01 100 chr19:7627379-7627479 2.25e-05 39_[-3(1.86e-09)]_31 chr8:128055732-128055832 2.41e-02 76_[+2(4.86e-05)]_9 chr22:22496361-22496461 8.84e-01 100 chr13:95358408-95358508 6.48e-01 100 chr8:94228619-94228719 2.82e-01 100 chr3:114865556-114865656 1.11e-01 100 chr5:141217932-141218032 2.51e-01 100 chr18:60544047-60544147 2.67e-02 15_[-2(2.21e-05)]_70 chr12:89926798-89926898 5.09e-01 100 chr18:68971601-68971701 3.92e-01 100 chr9:37339654-37339754 5.60e-04 35_[-2(1.16e-07)]_50 chr18:56179199-56179299 8.02e-04 35_[-2(3.48e-05)]_50 chr17:57232441-57232541 1.52e-01 100 chr3:115577672-115577772 7.15e-01 100 chr6:107437445-107437545 6.37e-01 100 chr4:189320774-189320874 5.88e-02 53_[-2(4.12e-05)]_32 chr11:22359014-22359114 1.27e-03 48_[-3(8.48e-07)]_22 chr21:33932796-33932896 9.79e-01 100 chr10:20546163-20546263 6.96e-01 100 chr4:187169600-187169700 1.60e-02 57_[+1(4.17e-05)]_22 chr10:21569877-21569977 1.73e-02 18_[-3(7.12e-05)]_52 chr20:414832-414932 8.54e-02 100 chr1:175834003-175834103 7.49e-02 100 chr12:81077733-81077833 9.03e-04 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chr11:113344827-11334492 6.11e-09 22_[-1(2.82e-11)]_57 chr11:57092206-57092306 2.27e-03 24_[+3(5.69e-05)]_2_[-3(4.77e-06)]_\ 14 chr4:5200585-5200685 9.16e-02 16_[+2(8.33e-05)]_12_[-2(3.18e-05)]_\ 42 chr14:41085107-41085207 1.75e-01 22_[+2(7.19e-05)]_63 chr1:202536408-202536508 2.17e-01 100 chr12:76449185-76449285 4.34e-01 100 chr12:97819834-97819934 9.76e-01 100 chr7:43331053-43331153 8.92e-02 13_[+2(3.18e-05)]_72 chr6:55845325-55845425 1.49e-01 61_[-2(5.70e-05)]_24 chr3:148916143-148916243 9.20e-01 100 chr1:230562015-230562115 2.71e-05 5_[+3(1.40e-08)]_12_[+3(3.80e-08)]_\ 23 chr20:32890632-32890732 2.05e-04 25_[+3(5.45e-08)]_45 chr4:163084841-163084941 1.28e-04 20_[-2(7.06e-06)]_65 chr13:100355696-10035579 7.24e-01 100 chr6:164765617-164765717 1.02e-03 49_[+2(1.56e-06)]_36 chr14:99117032-99117132 1.24e-01 100 chr3:155080371-155080471 8.71e-01 100 chr1:187593533-187593633 4.54e-01 100 chr7:41848038-41848138 3.79e-03 32_[+2(1.36e-05)]_53 chr3:62304426-62304526 3.80e-05 70_[+1(5.76e-07)]_9 chr16:52774863-52774963 6.94e-01 100 chr6:168609303-168609403 2.55e-05 54_[-2(2.74e-08)]_31 chr17:38579046-38579146 5.99e-02 100 chr22:23584321-23584421 1.36e-01 100 chr9:136324534-136324634 1.95e-04 14_[-3(7.75e-08)]_56 chr9:128517163-128517263 7.58e-02 100 chrX:123975730-123975830 1.65e-01 100 chr18:26488897-26488997 6.38e-01 100 chr12:86342911-86343011 4.20e-01 100 chrX:50357201-50357301 3.55e-01 100 chr5:88999288-88999388 4.16e-01 100 chr1:2457491-2457591 1.12e-05 [-3(4.90e-09)]_34_[+3(1.05e-05)]_6 chr17:49990166-49990266 8.30e-03 54_[-2(3.97e-06)]_31 chr17:70146998-70147098 4.03e-01 100 chr5:141133016-141133116 2.94e-01 100 chr5:98345556-98345656 9.46e-01 100 chr1:170456608-170456708 3.65e-02 100 chr1:102462360-102462460 1.28e-01 100 chr4:140074652-140074752 8.13e-03 47_[+2(8.93e-06)]_38 chr3:191406603-191406703 6.41e-01 100 chr20:47139510-47139610 8.63e-02 100 chr8:50823846-50823946 6.65e-04 22_[-3(9.67e-06)]_5_[-1(3.92e-05)]_\ 22 chr6:98316203-98316303 1.00e+00 100 chr17:74964794-74964894 3.53e-01 100 chr7:12368602-12368702 6.07e-01 100 chr6:21691973-21692073 1.37e-01 59_[-2(5.27e-05)]_26 chr1:183372003-183372103 8.13e-01 100 chr19:12942736-12942836 1.40e-08 53_[-1(2.52e-10)]_26 chr14:66392991-66393091 1.74e-02 67_[-3(9.67e-06)]_3 chr20:5950038-5950138 9.65e-03 21_[+2(2.13e-06)]_64 chr5:12323135-12323235 8.15e-01 100 chr16:26610628-26610728 1.09e-01 54_[+2(5.70e-05)]_31 chr22:27247712-27247812 6.58e-01 100 chr5:171407313-171407413 1.11e-01 100 chr6:163681163-163681263 1.47e-01 100 chr13:43449865-43449965 5.87e-01 100 chr15:71342286-71342386 4.35e-01 100 chr2:144649277-144649377 9.55e-03 58_[+2(1.84e-06)]_27 chr7:70168495-70168595 6.34e-01 100 chr18:36510850-36510950 2.24e-01 100 chr1:73012908-73013008 9.05e-02 17_[-2(2.66e-05)]_68 chr2:98962685-98962785 2.56e-05 21_[+3(1.81e-08)]_49 chr12:119418210-11941831 4.19e-09 20_[+2(7.53e-08)]_34_[+3(1.59e-08)]_\ 1 chr8:89603565-89603665 1.31e-01 100 chr3:71778378-71778478 1.25e-01 100 chr7:138142944-138143044 5.83e-01 100 chr13:56011103-56011203 9.72e-01 100 chr8:89471888-89471988 6.23e-01 100 chr8:39584457-39584557 5.99e-01 100 chr2:44243171-44243271 1.89e-01 100 chr13:26484962-26485062 4.28e-01 100 chr2:52683880-52683980 6.72e-01 100 chr14:96414317-96414417 5.28e-02 80_[-2(1.83e-05)]_5 chr19:14869500-14869600 1.43e-01 41_[-2(7.75e-05)]_44 chr19:18632758-18632858 1.37e-04 17_[-3(1.54e-07)]_53 chr6:129064758-129064858 3.38e-01 100 chr1:17796344-17796444 4.04e-01 100 chr1:22937869-22937969 5.82e-02 100 chr8:89378254-89378354 4.52e-01 100 chr17:38219103-38219203 4.88e-03 38_[-3(2.49e-06)]_32 chr1:98513474-98513574 3.65e-01 100 chrX:39473012-39473112 6.02e-03 59_[+2(5.59e-06)]_26 chr8:61588691-61588791 1.40e-01 100 chr1:175027876-175027976 2.98e-01 100 chr12:26039879-26039979 8.26e-01 100 chr2:175828900-175829000 4.51e-01 100 chr2:19285666-19285766 7.13e-02 48_[+1(9.09e-05)]_31 chr8:79065289-79065389 2.39e-01 100 chr5:68218043-68218143 1.54e-01 100 chr7:153127848-153127948 1.13e-01 100 chr6:49306455-49306555 5.18e-04 2_[-2(5.14e-08)]_83 chrX:1323917-1324017 1.88e-01 100 chr6:22878054-22878154 8.78e-01 100 chr12:39845115-39845215 9.18e-01 100 chr18:33430686-33430786 9.10e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: surya.stanford.edu ********************************************************************************