# DREME 4.12.0 # command: dreme -v 1 -oc cutrun_memechip_out/dreme_out -png -dna -p cutrun_memechip_out/seqs-centered -n cutrun_memechip_out/seqs-shuffled # positives: 1242 from cutrun_memechip_out/seqs-centered (Mon Oct 21 17:00:37 PDT 2019) # negatives: 1242 from cutrun_memechip_out/seqs-shuffled (Mon Oct 21 17:00:37 PDT 2019) # host: surya.stanford.edu # when: Mon Oct 21 17:14:30 PDT 2019 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.282 C 0.218 G 0.221 T 0.279 MOTIF ATGYWAAT DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ATGYWAAT ATTWRCAT 220 35 1.4e-037 5.0e-033 # ATGCAAAT ATTTGCAT 102 11 1.1e-020 4.0e-016 # ATGCTAAT ATTAGCAT 50 6 3.4e-010 1.3e-005 # ATGTAAAT ATTTACAT 61 14 1.2e-008 4.4e-004 # ATGTTAAT ATTAACAT 27 4 1.5e-005 5.6e-001 letter-probability matrix: alength= 4 w= 8 nsites= 244 E= 5.0e-033 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.639344 0.000000 0.360656 0.676230 0.000000 0.000000 0.323770 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF GGTSCTGA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GGTSCTGA TCAGSACC 86 9 9.7e-018 3.5e-013 # GGTGCTGA TCAGCACC 68 7 2.7e-014 9.9e-010 # GGTCCTGA TCAGGACC 18 2 1.9e-004 7.0e+000 letter-probability matrix: alength= 4 w= 8 nsites= 92 E= 3.5e-013 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.195652 0.804348 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGACAGCD DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GGACAGCD HGCTGTCC 80 10 1.9e-015 6.9e-011 # GGACAGCG CGCTGTCC 31 2 5.5e-008 2.0e-003 # GGACAGCT AGCTGTCC 29 4 4.8e-006 1.7e-001 # GGACAGCA TGCTGTCC 21 4 4.3e-004 1.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 6.9e-011 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.253012 0.000000 0.385542 0.361446 MOTIF ATTTMC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ATTTMC GKAAAT 216 114 9.2e-010 3.3e-005 # ATTTCC GGAAAT 136 65 1.0e-007 3.6e-003 # ATTTAC GTAAAT 92 55 1.1e-003 3.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 236 E= 3.3e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.411017 0.588983 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TGMATAW DREME-5 # Word RC Word Pos Neg P-value E-value # BEST TGMATAW WTATKCA 177 89 6.3e-009 2.3e-004 # TGCATAT ATATGCA 50 22 5.5e-004 2.0e+001 # TGAATAA TTATTCA 57 28 9.2e-004 3.3e+001 # TGAATAT ATATTCA 49 23 1.3e-003 4.6e+001 # TGCATAA TTATGCA 45 21 1.9e-003 6.8e+001 letter-probability matrix: alength= 4 w= 7 nsites= 196 E= 2.3e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.540816 0.459184 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.535714 0.000000 0.000000 0.464286 MOTIF TACAHA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST TACAHA TDTGTA 255 156 5.4e-008 1.9e-003 # TACAAA TTTGTA 123 78 5.8e-004 2.1e+001 # TACATA TATGTA 75 45 3.2e-003 1.1e+002 # TACACA TGTGTA 73 47 9.5e-003 3.4e+002 letter-probability matrix: alength= 4 w= 6 nsites= 279 E= 1.9e-003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.462366 0.261649 0.000000 0.275986 1.000000 0.000000 0.000000 0.000000 MOTIF AARGAAA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AARGAAA TTTCYTT 169 90 1.3e-007 4.5e-003 # AAAGAAA TTTCTTT 108 60 7.9e-005 2.8e+000 # AAGGAAA TTTCCTT 71 36 3.6e-004 1.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 181 E= 4.5e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.624309 0.000000 0.375691 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGTGGGR DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GGTGGGR YCCCACC 80 28 1.6e-007 5.7e-003 # GGTGGGA TCCCACC 37 12 2.1e-004 7.3e+000 # GGTGGGG CCCCACC 43 17 4.6e-004 1.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 85 E= 5.7e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.435294 0.000000 0.564706 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 88.26 seconds