# DREME 4.12.0
#     command: dreme -v 1 -oc cutnotseq_memechip_out/dreme_out -png -dna -p cutnotseq_memechip_out/seqs-centered -n cutnotseq_memechip_out/seqs-shuffled
#   positives: 676 from cutnotseq_memechip_out/seqs-centered (Mon Oct 21 17:01:27 PDT 2019)
#   negatives: 676 from cutnotseq_memechip_out/seqs-shuffled (Mon Oct 21 17:01:27 PDT 2019)
#        host: surya.stanford.edu
#        when: Mon Oct 21 17:14:41 PDT 2019

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.273 C 0.226 G 0.231 T 0.269


MOTIF GGTVCTGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTVCTGA   TCAGBACC         82          0   1.5e-026   4.9e-022
#         GGTGCTGA   TCAGCACC         61          0   1.1e-019   3.4e-015
#         GGTCCTGA   TCAGGACC         14          0   5.7e-005   1.9e+000
#         GGTACTGA   TCAGTACC          7          0   7.7e-003   2.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 87 E= 4.9e-022
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.080460 0.160920 0.758621 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATGYWAAT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGYWAAT   ATTWRCAT        110         15   6.4e-021   2.1e-016
#         ATGCAAAT   ATTTGCAT         48          5   1.8e-010   5.7e-006
#         ATGCTAAT   ATTAGCAT         26          1   1.7e-007   5.4e-003
#         ATGTAAAT   ATTTACAT         29          6   4.8e-005   1.6e+000
#         ATGTTAAT   ATTAACAT         18          3   6.9e-004   2.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 123 E= 2.1e-016
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.626016 0.000000 0.373984
0.626016 0.000000 0.000000 0.373984
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF GGACAGCD DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGACAGCD   HGCTGTCC         75          5   3.2e-018   1.0e-013
#         GGACAGCG   CGCTGTCC         29          0   1.4e-009   4.4e-005
#         GGACAGCT   AGCTGTCC         28          2   3.4e-007   1.1e-002
#         GGACAGCA   TGCTGTCC         19          3   3.9e-004   1.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 1.0e-013
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.243590 0.000000 0.384615 0.371795


# Stopping reason: E-value threshold exceeded
#    Running time: 24.08 seconds