Invoking:
  getsize seqnotcut_memechip_out/seq-not-cut.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.043255
Invoking:
  fasta-most -min 50 < seqnotcut_memechip_out/seq-not-cut.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.113038
Invoking:
  fasta-center -dna -len 100 < seqnotcut_memechip_out/seq-not-cut.fa 1> seqnotcut_memechip_out/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.118972
Invoking:
  fasta-shuffle-letters seqnotcut_memechip_out/seqs-centered seqnotcut_memechip_out/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.042495
Invoking:
  fasta-subsample seqnotcut_memechip_out/seqs-centered 600 -rest seqnotcut_memechip_out/seqs-discarded -seed 1 1> seqnotcut_memechip_out/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.127027
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/background
Finished invoke:
  name: bg  status: 0  time: 0.019346
Invoking:
  meme seqnotcut_memechip_out/seqs-sampled -oc seqnotcut_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile seqnotcut_memechip_out/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 748.074603
Invoking:
  dreme -v 1 -oc seqnotcut_memechip_out/dreme_out -png -dna -p seqnotcut_memechip_out/seqs-centered -n seqnotcut_memechip_out/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 619.511615
Invoking:
  centrimo -seqlen 210 -verbosity 1 -oc seqnotcut_memechip_out/centrimo_out -bfile seqnotcut_memechip_out/background seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.971245
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 seqnotcut_memechip_out/combined.meme seqnotcut_memechip_out/combined.meme 1> seqnotcut_memechip_out/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.76225
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_1 -bgfile seqnotcut_memechip_out/background -primary NYYWTTGTYATGCAAATN seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.512721
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_2 -bgfile seqnotcut_memechip_out/background -primary ATGCGCAT seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.429683
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_3 -bgfile seqnotcut_memechip_out/background -primary CAGSWGG seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.583608
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_4 -bgfile seqnotcut_memechip_out/background -primary ATTCAWAT seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.378079
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_5 -bgfile seqnotcut_memechip_out/background -primary ATGAATAW seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 1.127368
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_6 -bgfile seqnotcut_memechip_out/background -primary ARAGAVA seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.386998
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_7 -bgfile seqnotcut_memechip_out/background -primary CCWCCCCC seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.368194
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_8 -bgfile seqnotcut_memechip_out/background -primary CMCAGS seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.35635
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_9 -bgfile seqnotcut_memechip_out/background -primary ASAATAG seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.354068
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_10 -bgfile seqnotcut_memechip_out/background -primary SAGGAA seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.322744
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_11 -bgfile seqnotcut_memechip_out/background -primary YBHYKCYCKCYSHVBBSYGCYVSCBSSVG seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.598316
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_12 -bgfile seqnotcut_memechip_out/background -primary CVTTTC seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.396116
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_13 -bgfile seqnotcut_memechip_out/background -primary GTAMTTA seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.418759
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_14 -bgfile seqnotcut_memechip_out/background -primary GSCSGGRHTYGAACCMGSRACCTTKHGAT seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.626727
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_15 -bgfile seqnotcut_memechip_out/background -primary AAAAYAAA seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.412048
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_16 -bgfile seqnotcut_memechip_out/background -primary CCTGBAG seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.383
Invoking:
  spamo -verbosity 1 -oc seqnotcut_memechip_out/spamo_out_17 -bgfile seqnotcut_memechip_out/background -primary TTTAAA seqnotcut_memechip_out/seq-not-cut.fa seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo17  status: 0  time: 0.394762
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_1 --bgfile seqnotcut_memechip_out/background --motif NYYWTTGTYATGCAAATN seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo1  status: 0  time: 1.056014
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_2 --bgfile seqnotcut_memechip_out/background --motif ATGCGCAT seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.577406
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_3 --bgfile seqnotcut_memechip_out/background --motif CAGSWGG seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.712678
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_4 --bgfile seqnotcut_memechip_out/background --motif ATTCAWAT seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.799094
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_5 --bgfile seqnotcut_memechip_out/background --motif ATGAATAW seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.647733
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_6 --bgfile seqnotcut_memechip_out/background --motif ARAGAVA seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.668088
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_7 --bgfile seqnotcut_memechip_out/background --motif CCWCCCCC seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo7  status: 0  time: 1.546117
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_8 --bgfile seqnotcut_memechip_out/background --motif CMCAGS seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.70039
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_9 --bgfile seqnotcut_memechip_out/background --motif ASAATAG seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.585678
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_10 --bgfile seqnotcut_memechip_out/background --motif SAGGAA seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.685872
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_11 --bgfile seqnotcut_memechip_out/background --motif YBHYKCYCKCYSHVBBSYGCYVSCBSSVG seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.849716
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_12 --bgfile seqnotcut_memechip_out/background --motif CVTTTC seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.476
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_13 --bgfile seqnotcut_memechip_out/background --motif GTAMTTA seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.593414
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_14 --bgfile seqnotcut_memechip_out/background --motif GSCSGGRHTYGAACCMGSRACCTTKHGAT seqnotcut_memechip_out/meme_out/meme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.698203
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_15 --bgfile seqnotcut_memechip_out/background --motif AAAAYAAA seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo15  status: 0  time: 1.769937
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_16 --bgfile seqnotcut_memechip_out/background --motif CCTGBAG seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo16  status: 0  time: 0.619069
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc seqnotcut_memechip_out/fimo_out_17 --bgfile seqnotcut_memechip_out/background --motif TTTAAA seqnotcut_memechip_out/dreme_out/dreme.xml seqnotcut_memechip_out/seq-not-cut.fa
Finished invoke:
  name: fimo17  status: 0  time: 0.667813
Writing output
Invoking:
  meme-chip_html_to_tsv seqnotcut_memechip_out/meme-chip.html seqnotcut_memechip_out/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.258478
Done