# DREME 4.12.0 # command: dreme -v 1 -oc intersect_memechip_out/dreme_out -png -dna -p intersect_memechip_out/seqs-centered -n intersect_memechip_out/seqs-shuffled # positives: 517 from intersect_memechip_out/seqs-centered (Mon Oct 21 16:53:56 PDT 2019) # negatives: 517 from intersect_memechip_out/seqs-shuffled (Mon Oct 21 16:53:56 PDT 2019) # host: surya.stanford.edu # when: Mon Oct 21 17:03:00 PDT 2019 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.285 C 0.215 G 0.216 T 0.283 MOTIF ATGYWAAT DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ATGYWAAT ATTWRCAT 221 11 3.0e-064 8.6e-060 # ATGCAAAT ATTTGCAT 113 6 1.1e-029 3.2e-025 # ATGCTAAT ATTAGCAT 58 0 6.4e-019 1.8e-014 # ATGTAAAT ATTTACAT 52 2 2.4e-014 6.8e-010 # ATGTTAAT ATTAACAT 19 3 3.8e-004 1.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 252 E= 8.6e-060 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.000000 0.285714 0.694444 0.000000 0.000000 0.305556 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF TGMATAW DREME-2 # Word RC Word Pos Neg P-value E-value # BEST TGMATAW WTATKCA 169 34 8.7e-028 2.5e-023 # TGCATAA TTATGCA 62 10 3.4e-011 9.5e-007 # TGAATAA TTATTCA 54 7 7.1e-011 2.0e-006 # TGCATAT ATATGCA 57 11 2.2e-009 6.1e-005 # TGAATAT ATATTCA 27 7 3.4e-004 9.5e+000 letter-probability matrix: alength= 4 w= 7 nsites= 198 E= 2.5e-023 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.409091 0.590909 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.611111 0.000000 0.000000 0.388889 MOTIF ACAAWRG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST ACAAWRG CYWTTGT 111 30 5.1e-014 1.4e-009 # ACAAAGG CCTTTGT 35 8 1.5e-005 4.1e-001 # ACAATAG CTATTGT 25 5 1.3e-004 3.7e+000 # ACAAAAG CTTTTGT 31 10 5.8e-004 1.6e+001 # ACAATGG CCATTGT 23 8 4.8e-003 1.3e+002 letter-probability matrix: alength= 4 w= 7 nsites= 117 E= 1.4e-009 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.589744 0.000000 0.000000 0.410256 0.487179 0.000000 0.512821 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CCAGGTR DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CCAGGTR YACCTGG 46 5 5.0e-010 1.4e-005 # CCAGGTA TACCTGG 28 3 1.7e-006 4.7e-002 # CCAGGTG CACCTGG 20 2 5.2e-005 1.4e+000 letter-probability matrix: alength= 4 w= 7 nsites= 50 E= 1.4e-005 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.580000 0.000000 0.420000 0.000000 MOTIF ATCTRCAT DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ATCTRCAT ATGYAGAT 40 5 2.1e-008 5.9e-004 # ATCTACAT ATGTAGAT 21 0 3.9e-007 1.1e-002 # ATCTGCAT ATGCAGAT 19 5 3.0e-003 8.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 5.9e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.536585 0.000000 0.463415 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF RAAAGA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST RAAAGA TCTTTY 153 88 1.1e-006 3.1e-002 # AAAAGA TCTTTT 103 56 3.3e-005 9.1e-001 # GAAAGA TCTTTC 63 38 5.8e-003 1.6e+002 letter-probability matrix: alength= 4 w= 6 nsites= 179 E= 3.1e-002 0.614525 0.000000 0.385475 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACACSTG DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ACACSTG CASGTGT 23 1 1.2e-006 3.2e-002 # ACACCTG CAGGTGT 17 1 6.4e-005 1.7e+000 # ACACGTG CACGTGT 7 0 7.7e-003 2.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 25 E= 3.2e-002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.680000 0.320000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF RACAAAGA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST RACAAAGA TCTTTGTY 23 1 1.2e-006 3.2e-002 # AACAAAGA TCTTTGTT 15 1 2.4e-004 6.4e+000 # GACAAAGA TCTTTGTC 8 0 3.8e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 3.2e-002 0.652174 0.000000 0.347826 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 30.43 seconds