******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= cutnotseq_memechip_out/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:163697144-163697244 1.0000 100 chr1:22952670-22952770 1.0000 100 chr1:175028692-175028792 1.0000 100 chr18:47088177-47088277 1.0000 100 chr16:12755595-12755695 1.0000 100 chr20:44669306-44669406 1.0000 100 chr6:4893936-4894036 1.0000 100 chr6:107437557-107437657 1.0000 100 chr21:17131791-17131891 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100 chr1:230562137-230562237 1.0000 100 chr2:220172782-220172882 1.0000 100 chr19:50490316-50490416 1.0000 100 chr14:93380364-93380464 1.0000 100 chr11:104494696-10449479 1.0000 100 chr4:140090978-140091078 1.0000 100 chr14:34420329-34420429 1.0000 100 chr20:37314298-37314398 1.0000 100 chr6:99237141-99237241 1.0000 100 chr5:141133144-141133244 1.0000 100 chr12:119060119-11906021 1.0000 100 chr11:6822329-6822429 1.0000 100 chr17:61994063-61994163 1.0000 100 chr17:33030640-33030740 1.0000 100 chr6:139298892-139298992 1.0000 100 chr1:26735054-26735154 1.0000 100 chr7:136084181-136084281 1.0000 100 chr19:12943017-12943117 1.0000 100 chr5:159593226-159593326 1.0000 100 chr8:71291932-71292032 1.0000 100 chr11:44692479-44692579 1.0000 100 chr10:35931076-35931176 1.0000 100 chr20:30556178-30556278 1.0000 100 chr3:191109690-191109790 1.0000 100 chr5:161495485-161495585 1.0000 100 chr7:154861581-154861681 1.0000 100 chr2:79503076-79503176 1.0000 100 chr3:31183530-31183630 1.0000 100 chr12:131432640-13143274 1.0000 100 chr18:11714291-11714391 1.0000 100 chrX:150645144-150645244 1.0000 100 chr18:9574678-9574778 1.0000 100 chr6:19988844-19988944 1.0000 100 chr16:89992506-89992606 1.0000 100 chr17:70161412-70161512 1.0000 100 chr16:17232744-17232844 1.0000 100 chr7:32720266-32720366 1.0000 100 chr18:68971736-68971836 1.0000 100 chr17:72667320-72667420 1.0000 100 chr4:38490497-38490597 1.0000 100 chrX:27076024-27076124 1.0000 100 chr7:43331226-43331326 1.0000 100 chr2:129931599-129931699 1.0000 100 chr5:71358881-71358981 1.0000 100 chr4:171806086-171806186 1.0000 100 chr2:70847159-70847259 1.0000 100 chr7:19119605-19119705 1.0000 100 chr20:10199717-10199817 1.0000 100 chr6:105335273-105335373 1.0000 100 chr2:152085-152185 1.0000 100 chr8:132986231-132986331 1.0000 100 chr6:88829451-88829551 1.0000 100 chr6:146349183-146349283 1.0000 100 chr12:26040001-26040101 1.0000 100 chr16:17877918-17878018 1.0000 100 chr8:65292477-65292577 1.0000 100 chr6:24127052-24127152 1.0000 100 chr1:16867143-16867243 1.0000 100 chr2:148795290-148795390 1.0000 100 chr10:105038599-10503869 1.0000 100 chr8:10847647-10847747 1.0000 100 chr5:12330907-12331007 1.0000 100 chr10:55357437-55357537 1.0000 100 chr6:122773431-122773531 1.0000 100 chr1:155214392-155214492 1.0000 100 chr1:97181050-97181150 1.0000 100 chr9:138863784-138863884 1.0000 100 chr13:53424464-53424564 1.0000 100 chr10:20276712-20276812 1.0000 100 chr11:113344864-11334496 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme cutnotseq_memechip_out/seqs-sampled -oc cutnotseq_memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile cutnotseq_memechip_out/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 534 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 53400 N= 534 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.270 C 0.230 G 0.230 T 0.270 Background letter frequencies (from cutnotseq_memechip_out/background): A 0.272 C 0.229 G 0.229 T 0.272 ******************************************************************************** ******************************************************************************** MOTIF GGHGCTGTCCATGGTSCTGAA MEME-1 width = 21 sites = 75 llr = 1482 E-value = 2.9e-327 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGHGCTGTCCATGGTSCTGAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2141::::::62:::1:::97 pos.-specific C :23:a:2:aa12:::3a:::1 probability G 86:8::81::32aa:5::a11 matrix T 1131:a:9::15::a1:a::1 bits 2.1 * ** * * 1.9 ** ** ** *** 1.7 ** ** *** *** 1.5 ** *** *** *** Relative 1.3 ******* *** **** Entropy 1.1 * ******* *** **** (28.5 bits) 0.9 * ******* *** **** 0.6 * ******* *** ***** 0.4 ** ******** ********* 0.2 ********************* 0.0 --------------------- Multilevel GGAGCTGTCCATGGTGCTGAA consensus C G C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCATGGTSCTGAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr15:73638902-73639002 - 16 1.00e-12 AGGTGTGCTG GGCGCTGTCCGTGGTGCTGAA CGTCATATCT chr4:8581990-8582090 - 34 3.06e-12 GCGCAACCGC GGTGCTGTCCAGGGTGCTGAA TGCGCTCACC chr3:170302126-170302226 - 36 4.36e-12 TGCAGGGAAT GGCGCTGTCCGCGGTGCTGAA AGTTCTCAGA chr11:122852514-12285261 + 45 4.36e-12 GGCGGGGCGG GGAGCTGTCCGCGGTGCTGAA CACCACCGGC chr7:100701690-100701790 - 46 1.66e-11 GCGGGTCGAG GGCGCTGTCCATGGTACTGAA CCCGGGCAGA chr14:90961607-90961707 - 54 1.66e-11 AGATCACTGT GGTGCTCTCCATGGTCCTGAA CCTCACTAGT chr17:77290580-77290680 - 28 2.21e-11 CCACCCGCAG GTCGCTGTCCGTGGTGCTGAA CTCCTGCCTT chr18:44077137-44077237 + 34 2.21e-11 GGAGTGGTTT AGAGCTGTCCACGGTGCTGAA CCCGCCTCTT chr5:152655726-152655826 - 42 2.51e-11 AACTGTCCGG GATGCTGTCCATGGTCCTGAA CTTCTGCCAT chr19:57148956-57149056 - 66 3.05e-11 AGCTGCCTTG GGGGCTGTCCGTGGTGCTGAA TCTGTCTGGC chr15:77994885-77994985 - 3 3.05e-11 AGTCAGGAAG GCAGCTGTCCGGGGTGCTGAA CC chr6:34083118-34083218 - 42 3.53e-11 ACCCCTGGAG GCTGCTGTCCAAGGTCCTGAA CCAGGACCTT chr20:34972940-34973040 - 52 3.53e-11 AGGTCCACTG GGAGCTGTCCAAGGTTCTGAA ATCCCAACCA chr2:30142764-30142864 - 59 3.53e-11 CAGAGGCCCG GACGCTGTCCAGGGTGCTGAA GGGCGGCTCC chr6:96564354-96564454 + 62 3.96e-11 aaaggggggt ggaactgtccgtggtgctgaa aaaattactg chr5:176264410-176264510 - 12 3.96e-11 TGGAGCGCCT GGGGCTGTCCACGGTGCTGAA AGTGTGCCAT chr1:30209478-30209578 + 34 3.96e-11 CAAGAAGGCA GGCTCTGTCCATGGTGCTGAA TGGAATCCTT chr4:180018762-180018862 + 11 5.10e-11 GCTTTGTCAC GGAGCTCTCCATGGTGCTGAT GCACTTGCTC chr14:96401388-96401488 + 37 5.10e-11 GTGACTGGAA GGAGCTCTCCATGGTGCTGAT CTATTTTGCA chr11:74925402-74925502 - 52 5.10e-11 TAATGGGTTG GGCGCTGTCCAAGGTGCTGAC ATCTTCACTT chr14:82541942-82542042 - 29 6.62e-11 TGAACAGGCT GGTGCTGTCCAAGGTGCTGAG CAGGAGGTAA chr10:83737823-83737923 - 47 6.62e-11 TTGAAGCAAA GAAGCTGTCCAAGGTCCTGAA AGTTATAGAA chr11:113344864-11334496 - 52 7.63e-11 TCCCACGGTT GCCGCTGTCCTTGGTCCTGAA CTTTCGTTCT chr1:37486083-37486183 + 35 8.41e-11 CCCGGCCCTG GCTGCTCTCCGTGGTGCTGAA CACAGAGGTT chr8:92692869-92692969 - 46 8.41e-11 TGGGGCACGT GGTGCTGTCCTTGGTGCTGAT TTTGCTCTGA chr11:113861868-11386196 - 53 8.41e-11 CAAACCAGCT GGTGCTGGCCGTGGTGCTGAA GCTCTCATCT chr19:54406207-54406307 + 38 8.41e-11 GTGCTCGAAT AGCGCTGTCCATGGTTCTGAA GTGTTGTCTT chr19:34258812-34258912 + 31 9.51e-11 GAGCGCTGAT GGAGCTGTCCAGGGTCCTGAC GTGCAGCCCA chr20:44669306-44669406 + 70 9.51e-11 GGCCCCCGAG ACCGCTGTCCACGGTGCTGAA ACACAGCATT chr1:50745671-50745771 + 57 1.46e-10 AGGCAGTGTG GGTGCTGGCCGTGGTCCTGAA TCTGTAGGGG chr5:151303906-151304006 - 46 1.46e-10 AGCAGGTCTG GACGCTCTCCGTGGTGCTGAA ACGCCTCGCA chr17:4396590-4396690 + 25 1.63e-10 TTGCACGCGG GATGCTCTCCATGGTCCTGAA TCATCGCTGT chr13:79163385-79163485 + 9 1.63e-10 CCCTCCCT GGAGCTGGCCGCGGTGCTGAA AACCTTGCGT chr10:59908505-59908605 - 63 1.83e-10 CTGGCAGGAT ACAGCTGTCCAAGGTCCTGAA ACTCTTTCTT chr6:24127052-24127152 - 25 2.07e-10 TGGCGCCCAA GGAGCTCTCCAAGGTTCTGAA AACATTTCTG chr12:131011383-13101148 + 44 2.07e-10 GCGAGTGGTT GCTGCTGTCCAGGGTCCTGAT GGTCACTGAG chr9:34430770-34430870 + 33 2.07e-10 ACAAACAGGA GGAGCTCTCCAGGGTTCTGAA CCACCTCCCC chr4:119590374-119590474 - 32 2.30e-10 TGGAGTGCAG GGAGCTGTCCATGGTACTGAG CAGTTCTCAG chr22:37040282-37040382 + 64 2.55e-10 GTAGTTGGAA GATGCTCTCCAAGGTGCTGAA GCAAGTGGGG chr16:7232515-7232615 - 5 2.55e-10 AAATGAAAGA GATGCTGTCCAGGGTGCTGAT CCCT chr10:61024905-61025005 - 62 2.84e-10 ATGGCCACGT GTCACTGTCCATGGTCCTGAA ACCAGGATTC chr18:44082230-44082330 - 36 2.84e-10 AGGGGCAAGA GGAGCTGTCCGTGGTTCTGAC TCCTTCTCTG chr1:30224984-30225084 + 16 2.84e-10 GCATCCCCTC AGAGCTCTCCGCGGTGCTGAA ACCCACCTGT chr19:5404057-5404157 + 61 3.18e-10 CCAGGGCTGT GTCGCTGTCCGTGGTACTGAA CGGTGCTGGT chr9:134651895-134651995 - 28 3.18e-10 TCAGAGCCTG GGAGCTGTCCAGGGTCCTGCA CCGCTTGAGG chr16:23038133-23038233 - 26 3.18e-10 TGGCAGCATC TCTGCTGTCCACGGTGCTGAA TCTAACCAAC chr16:7063820-7063920 + 53 3.52e-10 ATGCTCAAAA AGAACTGTCCAAGGTGCTGAA ACTTTGACAA chr5:161495485-161495585 - 48 3.98e-10 CCTCACCAGG ACTGCTGTCCCTGGTGCTGAA CCATGTTTGC chr9:138048360-138048460 + 69 4.38e-10 CGCCTCAGTG GGATCTGTCCATGGTGCTGAC CTCCCAAGCT chr16:83735191-83735291 - 31 4.38e-10 GCAATTGGTG GGTGCTGACCGTGGTGCTGAA GTGGGGCTGG chr20:47139683-47139783 + 14 5.31e-10 cactgagcac tgagctgtcctaggtgctgaa atgatttcat chr1:11695894-11695994 + 44 5.31e-10 AGGCTGGCAG GGCGCTGTCCGCAGTGCTGAA GCGCCTCTCT chr6:146349183-146349283 + 33 5.85e-10 GGCTGGACCG AGCACTGTCCAGGGTCCTGAA GGCGGCAGGG chr1:33352147-33352247 + 2 5.85e-10 C GGTGCTCTCCAGGGTCCTGAC CGCCGAGTGG chr9:135457303-135457403 + 59 7.74e-10 GGCAGCCGCC GCCGCTCTCCGCGGTGCTGAT GCCGCCAGGT chr18:34849774-34849874 + 36 7.74e-10 AAATAGTCTA GGAGCTGTCCAAGGTGCTGGG CTGTCTGTGG chr19:54431014-54431114 + 12 8.42e-10 CGACGCCAGT GCACCTGTCCATGGTCCTGAA ACCCAGTTGC chr20:37309008-37309108 + 22 1.21e-09 GCGGACACTG TGAGCTGTCCAGGGTCCTGAG TATTCTGTTC chr16:17877918-17878018 + 61 1.44e-09 ACGATGACGT TTTGCTGTCCTTGGTGCTGAA AAAGTCTTCA chr7:154106785-154106885 + 7 1.44e-09 AGCCCA GTCGCTCTCCAAGGTCCTGAT TTTGAAAGGC chr19:36466527-36466627 - 49 1.44e-09 AAATGCCTGA ACTGCTGTCCATGGTTCTGAT CGTTGTTGTC chr6:105335273-105335373 - 37 1.58e-09 GGGCACGTGC ATTACTGTCCATGGTCCTGAA TTTGCTGAAA chr12:2861843-2861943 + 45 1.89e-09 GCGGCGGGTG AGCGCTGTCCCTGGTCCTGGA GAGGTTCCTG chr5:94138185-94138285 + 48 1.89e-09 AGACAATGAA GGATCTGTCCTTGGTCCTGAT TATACATTTT chr13:94342280-94342380 - 21 2.25e-09 CAGCTGCCAG GGAGCTGTCCATGGTCCTAGA CTTTCTAACA chr9:132552745-132552845 + 49 2.25e-09 GTGGATCCGG GGCGCTGTCTCTGGTCCTGAA AGTCACAGTC chr10:106584190-10658429 + 73 2.66e-09 GGAGgtgctg agcgctgtcccaggtgctgga gatataa chr2:207507386-207507486 - 49 5.01e-09 CAGAGGGCAG GACTCTGTCCAAGGTACTGAA GTTGGCGTTA chr7:154861581-154861681 - 20 6.75e-09 GCGCGGCTTT GGGGCTGTCCGCGGTGCTGCT GCGCTCCCCG chr3:117041738-117041838 + 46 7.84e-09 CTATCTACAT GTTACTATCCATGGTGCTGAA TTATCTTGGG chr6:88829451-88829551 + 27 1.71e-08 GGTGACAGCT GTCGCTGTCCTTGGTACTAAA AAACATTCAA chr19:50490316-50490416 + 57 4.20e-08 TGCCCAGCTG CCTGCTGTCCCTAGTGCTGAA CCCATACCCC chr8:62200374-62200474 - 25 8.47e-08 ATGTATTTCT GCAGGTGTCCTCGCTGCTGAA CTGGGTGGGT chr16:49191929-49192029 + 9 1.39e-07 TGCTGTTG TGCACTGTCCAGGGTTCTGTT TAGAAGCGGC chr10:120355420-12035552 + 15 4.00e-07 AGCAGAGCCT GGAGCTGGTCGCGGACCTGAG GACCCTCACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCATGGTSCTGAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:73638902-73639002 1e-12 15_[-1]_64 chr4:8581990-8582090 3.1e-12 33_[-1]_46 chr3:170302126-170302226 4.4e-12 35_[-1]_44 chr11:122852514-12285261 4.4e-12 44_[+1]_35 chr7:100701690-100701790 1.7e-11 45_[-1]_34 chr14:90961607-90961707 1.7e-11 53_[-1]_26 chr17:77290580-77290680 2.2e-11 27_[-1]_52 chr18:44077137-44077237 2.2e-11 33_[+1]_46 chr5:152655726-152655826 2.5e-11 41_[-1]_38 chr19:57148956-57149056 3e-11 65_[-1]_14 chr15:77994885-77994985 3e-11 2_[-1]_77 chr6:34083118-34083218 3.5e-11 41_[-1]_38 chr20:34972940-34973040 3.5e-11 51_[-1]_28 chr2:30142764-30142864 3.5e-11 58_[-1]_21 chr6:96564354-96564454 4e-11 61_[+1]_18 chr5:176264410-176264510 4e-11 11_[-1]_68 chr1:30209478-30209578 4e-11 33_[+1]_46 chr4:180018762-180018862 5.1e-11 10_[+1]_69 chr14:96401388-96401488 5.1e-11 36_[+1]_43 chr11:74925402-74925502 5.1e-11 51_[-1]_28 chr14:82541942-82542042 6.6e-11 28_[-1]_51 chr10:83737823-83737923 6.6e-11 46_[-1]_33 chr11:113344864-11334496 7.6e-11 51_[-1]_28 chr1:37486083-37486183 8.4e-11 34_[+1]_45 chr8:92692869-92692969 8.4e-11 45_[-1]_34 chr11:113861868-11386196 8.4e-11 52_[-1]_27 chr19:54406207-54406307 8.4e-11 37_[+1]_42 chr19:34258812-34258912 9.5e-11 30_[+1]_49 chr20:44669306-44669406 9.5e-11 69_[+1]_10 chr1:50745671-50745771 1.5e-10 56_[+1]_23 chr5:151303906-151304006 1.5e-10 45_[-1]_34 chr17:4396590-4396690 1.6e-10 24_[+1]_55 chr13:79163385-79163485 1.6e-10 8_[+1]_71 chr10:59908505-59908605 1.8e-10 62_[-1]_17 chr6:24127052-24127152 2.1e-10 24_[-1]_55 chr12:131011383-13101148 2.1e-10 43_[+1]_36 chr9:34430770-34430870 2.1e-10 32_[+1]_47 chr4:119590374-119590474 2.3e-10 31_[-1]_48 chr22:37040282-37040382 2.6e-10 63_[+1]_16 chr16:7232515-7232615 2.6e-10 4_[-1]_75 chr10:61024905-61025005 2.8e-10 61_[-1]_18 chr18:44082230-44082330 2.8e-10 35_[-1]_44 chr1:30224984-30225084 2.8e-10 15_[+1]_64 chr19:5404057-5404157 3.2e-10 60_[+1]_19 chr9:134651895-134651995 3.2e-10 27_[-1]_52 chr16:23038133-23038233 3.2e-10 25_[-1]_54 chr16:7063820-7063920 3.5e-10 52_[+1]_27 chr5:161495485-161495585 4e-10 47_[-1]_32 chr9:138048360-138048460 4.4e-10 68_[+1]_11 chr16:83735191-83735291 4.4e-10 30_[-1]_49 chr20:47139683-47139783 5.3e-10 13_[+1]_66 chr1:11695894-11695994 5.3e-10 43_[+1]_36 chr6:146349183-146349283 5.9e-10 32_[+1]_47 chr1:33352147-33352247 5.9e-10 1_[+1]_78 chr9:135457303-135457403 7.7e-10 58_[+1]_21 chr18:34849774-34849874 7.7e-10 35_[+1]_44 chr19:54431014-54431114 8.4e-10 11_[+1]_68 chr20:37309008-37309108 1.2e-09 21_[+1]_58 chr16:17877918-17878018 1.4e-09 60_[+1]_19 chr7:154106785-154106885 1.4e-09 6_[+1]_73 chr19:36466527-36466627 1.4e-09 48_[-1]_31 chr6:105335273-105335373 1.6e-09 36_[-1]_43 chr12:2861843-2861943 1.9e-09 44_[+1]_35 chr5:94138185-94138285 1.9e-09 47_[+1]_32 chr13:94342280-94342380 2.2e-09 20_[-1]_59 chr9:132552745-132552845 2.2e-09 48_[+1]_31 chr10:106584190-10658429 2.7e-09 72_[+1]_7 chr2:207507386-207507486 5e-09 48_[-1]_31 chr7:154861581-154861681 6.8e-09 19_[-1]_60 chr3:117041738-117041838 7.8e-09 45_[+1]_34 chr6:88829451-88829551 1.7e-08 26_[+1]_53 chr19:50490316-50490416 4.2e-08 56_[+1]_23 chr8:62200374-62200474 8.5e-08 24_[-1]_55 chr16:49191929-49192029 1.4e-07 8_[+1]_71 chr10:120355420-12035552 4e-07 14_[+1]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCATGGTSCTGAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGHGCTGTCCATGGTSCTGAA width=21 seqs=75 chr15:73638902-73639002 ( 16) GGCGCTGTCCGTGGTGCTGAA 1 chr4:8581990-8582090 ( 34) GGTGCTGTCCAGGGTGCTGAA 1 chr3:170302126-170302226 ( 36) GGCGCTGTCCGCGGTGCTGAA 1 chr11:122852514-12285261 ( 45) GGAGCTGTCCGCGGTGCTGAA 1 chr7:100701690-100701790 ( 46) GGCGCTGTCCATGGTACTGAA 1 chr14:90961607-90961707 ( 54) GGTGCTCTCCATGGTCCTGAA 1 chr17:77290580-77290680 ( 28) GTCGCTGTCCGTGGTGCTGAA 1 chr18:44077137-44077237 ( 34) AGAGCTGTCCACGGTGCTGAA 1 chr5:152655726-152655826 ( 42) GATGCTGTCCATGGTCCTGAA 1 chr19:57148956-57149056 ( 66) GGGGCTGTCCGTGGTGCTGAA 1 chr15:77994885-77994985 ( 3) GCAGCTGTCCGGGGTGCTGAA 1 chr6:34083118-34083218 ( 42) GCTGCTGTCCAAGGTCCTGAA 1 chr20:34972940-34973040 ( 52) GGAGCTGTCCAAGGTTCTGAA 1 chr2:30142764-30142864 ( 59) GACGCTGTCCAGGGTGCTGAA 1 chr6:96564354-96564454 ( 62) GGAACTGTCCGTGGTGCTGAA 1 chr5:176264410-176264510 ( 12) GGGGCTGTCCACGGTGCTGAA 1 chr1:30209478-30209578 ( 34) GGCTCTGTCCATGGTGCTGAA 1 chr4:180018762-180018862 ( 11) GGAGCTCTCCATGGTGCTGAT 1 chr14:96401388-96401488 ( 37) GGAGCTCTCCATGGTGCTGAT 1 chr11:74925402-74925502 ( 52) GGCGCTGTCCAAGGTGCTGAC 1 chr14:82541942-82542042 ( 29) GGTGCTGTCCAAGGTGCTGAG 1 chr10:83737823-83737923 ( 47) GAAGCTGTCCAAGGTCCTGAA 1 chr11:113344864-11334496 ( 52) GCCGCTGTCCTTGGTCCTGAA 1 chr1:37486083-37486183 ( 35) GCTGCTCTCCGTGGTGCTGAA 1 chr8:92692869-92692969 ( 46) GGTGCTGTCCTTGGTGCTGAT 1 chr11:113861868-11386196 ( 53) GGTGCTGGCCGTGGTGCTGAA 1 chr19:54406207-54406307 ( 38) AGCGCTGTCCATGGTTCTGAA 1 chr19:34258812-34258912 ( 31) GGAGCTGTCCAGGGTCCTGAC 1 chr20:44669306-44669406 ( 70) ACCGCTGTCCACGGTGCTGAA 1 chr1:50745671-50745771 ( 57) GGTGCTGGCCGTGGTCCTGAA 1 chr5:151303906-151304006 ( 46) GACGCTCTCCGTGGTGCTGAA 1 chr17:4396590-4396690 ( 25) GATGCTCTCCATGGTCCTGAA 1 chr13:79163385-79163485 ( 9) GGAGCTGGCCGCGGTGCTGAA 1 chr10:59908505-59908605 ( 63) ACAGCTGTCCAAGGTCCTGAA 1 chr6:24127052-24127152 ( 25) GGAGCTCTCCAAGGTTCTGAA 1 chr12:131011383-13101148 ( 44) GCTGCTGTCCAGGGTCCTGAT 1 chr9:34430770-34430870 ( 33) GGAGCTCTCCAGGGTTCTGAA 1 chr4:119590374-119590474 ( 32) GGAGCTGTCCATGGTACTGAG 1 chr22:37040282-37040382 ( 64) GATGCTCTCCAAGGTGCTGAA 1 chr16:7232515-7232615 ( 5) GATGCTGTCCAGGGTGCTGAT 1 chr10:61024905-61025005 ( 62) GTCACTGTCCATGGTCCTGAA 1 chr18:44082230-44082330 ( 36) GGAGCTGTCCGTGGTTCTGAC 1 chr1:30224984-30225084 ( 16) AGAGCTCTCCGCGGTGCTGAA 1 chr19:5404057-5404157 ( 61) GTCGCTGTCCGTGGTACTGAA 1 chr9:134651895-134651995 ( 28) GGAGCTGTCCAGGGTCCTGCA 1 chr16:23038133-23038233 ( 26) TCTGCTGTCCACGGTGCTGAA 1 chr16:7063820-7063920 ( 53) AGAACTGTCCAAGGTGCTGAA 1 chr5:161495485-161495585 ( 48) ACTGCTGTCCCTGGTGCTGAA 1 chr9:138048360-138048460 ( 69) GGATCTGTCCATGGTGCTGAC 1 chr16:83735191-83735291 ( 31) GGTGCTGACCGTGGTGCTGAA 1 chr20:47139683-47139783 ( 14) TGAGCTGTCCTAGGTGCTGAA 1 chr1:11695894-11695994 ( 44) GGCGCTGTCCGCAGTGCTGAA 1 chr6:146349183-146349283 ( 33) AGCACTGTCCAGGGTCCTGAA 1 chr1:33352147-33352247 ( 2) GGTGCTCTCCAGGGTCCTGAC 1 chr9:135457303-135457403 ( 59) GCCGCTCTCCGCGGTGCTGAT 1 chr18:34849774-34849874 ( 36) GGAGCTGTCCAAGGTGCTGGG 1 chr19:54431014-54431114 ( 12) GCACCTGTCCATGGTCCTGAA 1 chr20:37309008-37309108 ( 22) TGAGCTGTCCAGGGTCCTGAG 1 chr16:17877918-17878018 ( 61) TTTGCTGTCCTTGGTGCTGAA 1 chr7:154106785-154106885 ( 7) GTCGCTCTCCAAGGTCCTGAT 1 chr19:36466527-36466627 ( 49) ACTGCTGTCCATGGTTCTGAT 1 chr6:105335273-105335373 ( 37) ATTACTGTCCATGGTCCTGAA 1 chr12:2861843-2861943 ( 45) AGCGCTGTCCCTGGTCCTGGA 1 chr5:94138185-94138285 ( 48) GGATCTGTCCTTGGTCCTGAT 1 chr13:94342280-94342380 ( 21) GGAGCTGTCCATGGTCCTAGA 1 chr9:132552745-132552845 ( 49) GGCGCTGTCTCTGGTCCTGAA 1 chr10:106584190-10658429 ( 73) AGCGCTGTCCCAGGTGCTGGA 1 chr2:207507386-207507486 ( 49) GACTCTGTCCAAGGTACTGAA 1 chr7:154861581-154861681 ( 20) GGGGCTGTCCGCGGTGCTGCT 1 chr3:117041738-117041838 ( 46) GTTACTATCCATGGTGCTGAA 1 chr6:88829451-88829551 ( 27) GTCGCTGTCCTTGGTACTAAA 1 chr19:50490316-50490416 ( 57) CCTGCTGTCCCTAGTGCTGAA 1 chr8:62200374-62200474 ( 25) GCAGGTGTCCTCGCTGCTGAA 1 chr16:49191929-49192029 ( 9) TGCACTGTCCAGGGTTCTGTT 1 chr10:120355420-12035552 ( 15) GGAGCTGGTCGCGGACCTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCATGGTSCTGAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 42720 bayes= 10.5847 E= 2.9e-327 -76 -410 173 -203 -135 -29 139 -135 41 42 -251 11 -154 -410 188 -235 -1287 211 -410 -1287 -1287 -1287 -1287 188 -434 -40 183 -1287 -434 -1287 -210 178 -1287 211 -1287 -434 -1287 211 -1287 -434 108 -178 22 -154 -54 -40 -51 82 -335 -1287 209 -1287 -1287 -410 211 -1287 -434 -1287 -1287 186 -203 42 122 -154 -1287 213 -1287 -1287 -1287 -1287 -1287 188 -335 -1287 209 -1287 174 -310 -210 -434 141 -178 -178 -89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCATGGTSCTGAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 75 E= 2.9e-327 0.160000 0.013333 0.760000 0.066667 0.106667 0.186667 0.600000 0.106667 0.360000 0.306667 0.040000 0.293333 0.093333 0.013333 0.840000 0.053333 0.000000 0.986667 0.013333 0.000000 0.000000 0.000000 0.000000 1.000000 0.013333 0.173333 0.813333 0.000000 0.013333 0.000000 0.053333 0.933333 0.000000 0.986667 0.000000 0.013333 0.000000 0.986667 0.000000 0.013333 0.573333 0.066667 0.266667 0.093333 0.186667 0.173333 0.160000 0.480000 0.026667 0.000000 0.973333 0.000000 0.000000 0.013333 0.986667 0.000000 0.013333 0.000000 0.000000 0.986667 0.066667 0.306667 0.533333 0.093333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.026667 0.000000 0.973333 0.000000 0.906667 0.026667 0.053333 0.013333 0.720000 0.066667 0.066667 0.146667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGCTGTCCATGGTSCTGAA MEME-1 regular expression -------------------------------------------------------------------------------- GG[ACT]GCTGTCC[AG]TGGT[GC]CTGAA -------------------------------------------------------------------------------- Time 223.07 secs. ******************************************************************************** ******************************************************************************** MOTIF WMATTWRCATAWNWA MEME-2 width = 15 sites = 157 llr = 1495 E-value = 3.4e-112 ******************************************************************************** -------------------------------------------------------------------------------- Motif WMATTWRCATAWNWA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 349::44:a:74246 pos.-specific C 14::1::a:::1222 probability G 111:::6:::11221 matrix T 511a86:::a24322 bits 2.1 1.9 *** 1.7 * *** 1.5 * *** Relative 1.3 ** *** Entropy 1.1 *** **** (13.7 bits) 0.9 ******** 0.6 ********* 0.4 ********** * 0.2 ************ * 0.0 --------------- Multilevel TAATTTGCATAATAA consensus AC AA TTGT sequence A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATAWNWA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chr20:50825679-50825779 - 53 1.30e-08 ATGACGACCT TCATTTGCATATTAA AAGACTAGGG chr12:9517117-9517217 + 55 1.30e-08 cccatcaggt tcatttgcatatgaa cccagattca chrX:27076024-27076124 - 7 3.62e-08 GGTAGAAGCC ACATTTGCATAATAA AAGATT chr12:14867316-14867416 - 29 3.62e-08 GGTAGAAGCC ACATTTGCATAATAA AAGTCTAGGG chr8:59461424-59461524 + 13 6.17e-08 acgaattacc tcattagcataacaa agacatccct chr3:37343494-37343594 - 33 6.17e-08 AGACTCTAAA ACATTTGCATAACAA AACTGCATCA chr11:14369549-14369649 + 10 6.17e-08 GACAAGATC TCATTAGCATAACAA AGTAAAACAA chr18:72511985-72512085 - 14 2.17e-07 GGAATGCACA AAATTAGCATAAGAA TAACAAAACT chr4:136304858-136304958 - 58 2.17e-07 ATTAGCCTTC TCATTAACATAAGAA CGAACAGTAA chr10:20546291-20546391 + 59 2.87e-07 AAAGAACTAC TCATTAACATAACAA TGATTTAAAA chr5:120187802-120187902 + 22 3.87e-07 CTCTTGCCCA TAATTAGCATAAGCA AAGTCAGTAC chr20:5950182-5950282 - 6 3.87e-07 CTCAGTCAGC TAATTAACATATTAA AGCCA chr2:214552731-214552831 - 42 5.05e-07 TTGTGGGAGA AAATTTGCATATGTA AAGAATCTCT chr5:12330907-12331007 + 34 6.21e-07 acggcaccct gcatttgcatattaa aaggctagga chr4:185114558-185114658 + 78 6.21e-07 ATATGGGATC TAATTAGCATATGGA AATTAGGT chr10:99239630-99239730 + 41 6.21e-07 atggtgccct gcatttgcatattaa aaggctcggg chr7:14024610-14024710 + 75 6.21e-07 AGTCTTACCT TCATTAACATATAAA TACAATCATC chr3:31183530-31183630 - 19 7.39e-07 TTTTTGGTTT ACATTAACATATGAA AGGGGGATAC chr1:45917895-45917995 + 22 7.39e-07 TCTAGAAGCC AAATTAACATAATAA TGACTTCAAA chr4:27892317-27892417 + 24 7.39e-07 tctgctgcat aaatttgcataaata aagaggagct chr11:63298741-63298841 - 62 7.39e-07 CCCTCACTGC TCATTAGCATAAGAC ACTCCCACCA chr6:133490972-133491072 - 51 8.95e-07 CTTCCTGGCT TGATTTGCATAAGAA TAAAGGATTC chr12:76449292-76449392 - 46 8.95e-07 CTTCCAGGAG AAATTTGCATTTTAA AAGAATACCA chr15:80681679-80681779 - 4 1.11e-06 AATTATTCAA TAATTTACATATACA GAG chr4:85487088-85487188 + 52 1.11e-06 acacctgccg acatttacatatgca agcttctagc chr3:164658699-164658799 + 26 1.11e-06 TCCTCAAAAG TAATTAGCATACTAA ACAAAAGAGT chr3:21683397-21683497 + 3 1.11e-06 ac tcatctgcataataa aagattaggt chr2:70847159-70847259 + 24 1.36e-06 gacagaggat tcatctgcataacaa aagattagga chr6:164899214-164899314 - 70 1.36e-06 TTAAGAATTC TAATTAACATATGTA ACTAACGTTA chr1:230563708-230563808 + 21 1.36e-06 CCGGTGTCCC TAATTTGCATTTGTA TGGTGCTAAT chr7:7937057-7937157 - 25 1.36e-06 TACATGGAGC TAATTAACATATGTA TTACCTTACA chr3:104238661-104238761 + 86 1.61e-06 tCTTTCCTTG aaatttgcatttaaa chr4:133903295-133903395 - 71 1.61e-06 TGCAGCCCAT TAATTTGCATTTCTA ACAATCTCCC chr3:78396319-78396419 + 69 1.61e-06 CAAAATGTTG CAATTTACATATTAA TGAAGTTTTT chr3:77328049-77328149 - 71 1.89e-06 TCATTGTGAG TCATTTGCATAATGT TTCCCGTATA chr5:34475095-34475195 - 83 1.89e-06 GTG TCATTTGCATAAGGT GCGAAAAACT chr8:72928396-72928496 + 39 1.89e-06 taattataat acattagcatactaa aggaagagcc chr2:152085-152185 + 44 2.24e-06 ttcactctct tcatttacataaaat attcgccaag chr6:129275817-129275917 - 57 2.24e-06 AACACTGCTG AAATTTACATATATA TGGGGAGTTC chr21:17131791-17131891 - 40 2.24e-06 CTTGGAGGCT TCATTTGCATGATAA AACCTAGGTC chr7:19119605-19119705 - 46 2.67e-06 TAATGCATTA TAATTAGCATATAAT GAGGTCACTT chr3:146222264-146222364 + 51 2.67e-06 taatgcatta taattagcatataat gagcagtgag chr18:60499561-60499661 + 49 2.67e-06 GATCCGGTTA TAATTAGCATTTTCA TTCAGTACTA chr20:37321040-37321140 - 1 2.67e-06 TGTTGTCTTT TCATTTGCATACAGA chr5:12332397-12332497 - 9 2.67e-06 TTTGGGGGGT AAATTTGCATTTGTA AAGAATCT chr7:26775613-26775713 - 85 2.67e-06 A TAATTAGCATATAAT GAGCAGTGAG chr1:99603171-99603271 + 75 3.14e-06 taaccaattt aaatctgcataacaa accttactct chr7:70322682-70322782 - 58 3.14e-06 GAGGGAGACT TCATCTACATAACAA GGCCACCTTT chr4:189029220-189029320 + 70 3.14e-06 ggagcactca aaattaacatatcta aagccgctca chr15:26570693-26570793 - 9 3.14e-06 GAGGGAGGCT TCATCTACATAACAA GGACACCC chr6:88829451-88829551 - 73 3.67e-06 CAAATGTTCC TAGTTTGCATAAGAA AAAAAAGAAG chr18:60544176-60544276 + 16 3.67e-06 TAGTGATAAT TCATTAGCATAGTGA AATAAAGAGT chr12:77266118-77266218 + 52 3.67e-06 atggcgccct gcatttgcatactaa aaagctaggg chr9:120031206-120031306 + 73 4.24e-06 TATGGCAGCA TCATTAGCATAACAG GTGCCTTTGC chr20:6795702-6795802 - 71 4.24e-06 CAATTAACAT AAATTAACATTTGAA TGCTTACTAT chr9:26152235-26152335 + 74 4.24e-06 tttaaagatg aaattaacattacaa tcagctgacc chr5:93209819-93209919 - 68 4.88e-06 CTAAGTCACC TCATTAGCATAAACT CAGTGATGGA chr18:67066312-67066412 - 82 5.61e-06 CAGA AAATTTGCATAAACT CTCTGATAAC chrX:50357311-50357411 + 27 5.61e-06 gtgggagttg aaattagcataactc ctagggaggg chr3:89428231-89428331 + 16 5.61e-06 AAACAGACCC AAATTAGCATATTCC CCACCTGCAC chr4:163084977-163085077 + 15 5.61e-06 CTGACGTAAC TATTTTGCATATCAA CTCGCCGAGA chr5:71358881-71358981 - 48 6.45e-06 TCTAAAATAA CCATTAACATATTTA TTACAGAAAT chr11:43975881-43975981 - 83 6.45e-06 AAC CCATCTGCATAATAA AAGATTAGGG chr9:128456531-128456631 - 8 6.45e-06 GTAGTGTTTG TAATTTGCATTATGC ATACTTT chr19:13763594-13763694 + 4 6.45e-06 aac ccatctgcataataa aacattaggg chr4:159248693-159248793 - 26 6.45e-06 ATCAGGTATG ACATTTACATATTGC ACAGGGAAGG chr3:138564728-138564828 + 37 6.45e-06 AATTAAATTA ACATTTACATAATCT GCTACCTTGA chr11:69336331-69336431 - 7 6.45e-06 TTTGCTAGAG ATATTTGCATAACTA AAAGGA chr6:139298892-139298992 + 28 7.38e-06 cactgtgatt taatttgcatttccc taatgactaa chr14:67735183-67735283 + 27 7.38e-06 taacgcatta taattagcatatagt gagcagtgag chr7:76302666-76302766 + 24 8.33e-06 actaggtgtg ccatttgcatatggc gcaaaaagct chr10:115472512-11547261 + 45 8.33e-06 accaggtgtg tcatttgcatagggc accaaaaact chr5:90680440-90680540 - 18 9.36e-06 ATTAATTGTC TAGTTTGCATATTTA TACTCTTTAT chr6:62737195-62737295 - 66 9.36e-06 AAAAGTCACC TCATTAACATAAACT CAGGTGTGAA chr9:10339050-10339150 + 72 9.36e-06 AAATCAGTCT TAATTTGCATAAAGG CTTTTTCATT chr17:49990323-49990423 + 39 1.06e-05 AGTCGGAGCT GAATTTGCATATCTC TTTAGAATCA chr5:54920928-54921028 + 34 1.06e-05 atccacccct tgattagcatatcac caagaaataa chr13:102519802-10251990 + 75 1.06e-05 CGAGAGAACA CAATTTGCATAATGT GGGACCCAGT chr11:94383101-94383201 + 60 1.20e-05 tttattcact tcatttacatagaat attcaccaag chrX:150645144-150645244 - 52 1.34e-05 GGCAGAGCAC TAATCAACATATGCA CATAATAAAA chr19:50143341-50143441 - 10 1.34e-05 CACAGGTCTC TCATTAGCATAGCCC CGCCTCATT chr18:47088177-47088277 - 47 1.34e-05 CGCCAGATGG TGATTTGCATAATTT ATTCCCGTCT chr6:135572012-135572112 + 59 1.49e-05 AAAAAAGTGA CAATTAGCATTTCGA ATGGTATAGA chr7:136084181-136084281 - 83 1.67e-05 AAC CTATTTGCATATCTA TCTGAATGCA chr3:115978762-115978862 + 36 1.67e-05 GCTAAATCTT TCATTTACATTCAGA AGATGGTTTT chr1:183603211-183603311 + 77 1.67e-05 TTTTTTTGCA ACATTTACATTTTTC TAAAAAAGA chr13:104833594-10483369 - 49 1.67e-05 CCTGGAGTCT TCATCTGCATAACCT TAGCTTCCAC chr8:97855833-97855933 - 9 1.86e-05 GTTAGTCACC TCATCTACATTATTA TTCAATGT chr8:103395185-103395285 + 5 1.86e-05 aagg aaattagcattagtt aaacccctag chr2:204598883-204598983 - 31 1.86e-05 TGATCTTCTT ACATTAGCATTTGCT TAACAAGCTG chr10:73104320-73104420 + 62 2.06e-05 CTAGCTGGGC AAATTAGCATGTCCA TAGACCCCCG chr1:154159803-154159903 - 80 2.06e-05 TTCTTC ATATTTACATAGGAA TCCACCAAAA chr2:162225781-162225881 - 79 2.28e-05 AAGAAAC TAGTTAACATAAGCA CTTCCTTCCC chr1:220007688-220007788 - 45 2.78e-05 GCTAGATGTG CCATTTGCATAGGGC ATGAAAAAGC chr8:71291932-71292032 + 45 3.05e-05 CAAACATGAG TAATTAACATACAGC TTAAGCCTTC chr2:8820859-8820959 - 70 3.05e-05 TATTGAAACT ACATTTACATACACT GCCCTTGAAA chr2:238107864-238107964 + 29 3.05e-05 TCAAACCTAA AAATTAACATATGGG AAATTAACAT chr2:69677849-69677949 - 53 3.05e-05 GATAAGCTTG TAATCAACATTATCA GTGTGGAATG chr9:3088192-3088292 - 27 3.35e-05 ACCAGGTATG CCATTTGCATAGTGT GTGAAGGAGC chr20:6745286-6745386 - 86 3.35e-05 . AAATCAACATTAAAA TAGTGATCCC chr5:159593226-159593326 - 84 3.68e-05 AC AGATTAGCATGAGAA GAGACGGATT chr12:28613125-28613225 - 2 3.68e-05 ATACCACCTA ACATTTGCATGATAG T chr6:110175853-110175953 - 18 3.68e-05 TAACATATCT TCATTAGCATGACTT TACTTTGATG chr14:79329287-79329387 + 84 3.68e-05 AAAGAAAACA AATTTTGCATTAGTA TG chr2:190983922-190984022 + 10 4.02e-05 ggcggtgtc tgatttgcatagggc tcaggggatt chr11:31264089-31264189 - 16 4.02e-05 GTAGCAAAGG CTATTTGCATAACTC AGCCTCTCAG chr2:24270229-24270329 - 44 4.02e-05 AACCCTCTGC TAATGTGCATATTCA AAAGCCAATA chr12:131432640-13143274 - 23 4.38e-05 ACCAGATATG CCATTTACATAGCCC GGAAGAGGCT chr6:3166336-3166436 - 61 4.38e-05 GATGAGCTGT GAATTTACATTGTCA GGGTGAAATT chr1:59170016-59170116 - 18 4.38e-05 GATGAGCTAT CAATTTACATTGCCA GGGTGAAATT chr10:52378861-52378961 - 78 4.38e-05 TTTGTTTT TGATTTACATAAGTG GTTCTGTGCT chr11:76653225-76653325 + 81 4.78e-05 ttttatgtga tgatttgcatttatt gattt chr10:55357437-55357537 + 42 5.21e-05 gataagctgt tgatttacattgtca aggcaaaact chr2:201068131-201068231 + 57 5.21e-05 ttcaccctct ccatttacatagacc acacacacca chr11:115374994-11537509 - 43 5.21e-05 TAACATAAAC ATATTTGCATACGCC CCTCCCCTTG chr21:37469326-37469426 - 20 5.21e-05 CAGGCTCAGT GAATCTGCATTAATA TGCATTTGTC chr2:104832047-104832147 + 81 5.21e-05 atggtgccct gcatttgtatattaa aaggc chr20:1986514-1986614 + 69 5.21e-05 Tttatgctgt gtatttgcatatgtt atctaatact chr14:34420329-34420429 - 23 5.67e-05 GCAGTTAATT CTATTTACATTTTCA GTGTGGGATC chr5:95806980-95807080 + 43 5.67e-05 GTGATCAGAG GAGTTTGCATAACAT GAATTGAGAT chr4:140090978-140091078 - 11 6.15e-05 TCTAAATTCA TCTTTTACATACAGA TGGTTCTGTC chr7:43331226-43331326 - 86 6.67e-05 . AAATTTACATCTATA AAGGAAATCT chr1:11905619-11905719 + 77 6.67e-05 ACTTTATCTA CAGTTAGCATAAGAT GTGAGAAGT chr5:51177684-51177784 - 72 6.67e-05 TCACATACCT TTGTTAACATAAAAA AGGAACTCCT chr7:130775647-130775747 - 64 6.67e-05 ACTGCTCAGT GAATCTACATTTTTA CATGTGAAAA chr16:11730077-11730177 + 35 6.67e-05 accaggtgtg ctatttgcatagcac gtgaagaact chr11:46559422-46559522 + 81 6.67e-05 TTTGTCTTAG TGATTTACATCAGAA TGCAG chr2:139034649-139034749 - 52 7.22e-05 ACTGTAGAGG AAATCTACATAAGTG AAGTTGACAG chr16:8076294-8076394 - 2 7.22e-05 CTTATATTGT TCATTTGTATTTTGA G chr10:89733292-89733392 + 31 7.80e-05 ACTCTTTTTT TCTTTAACATTTTAC TTTGCTTTAG chr21:44377036-44377136 - 82 7.80e-05 CTAC ATTTTTGCATAAACA ATAGGGCATT chr1:6112407-6112507 + 57 7.80e-05 aacgcgtaac tttttagcataaata cgttccatgc chr8:5023575-5023675 + 3 7.80e-05 at caattaacatgcgaa aagagggagt chr7:138867140-138867240 - 79 8.42e-05 AACTTCT AAATCTACATTGTTA ACTACTAAAT chr11:69453708-69453808 - 56 8.42e-05 GAGGAAACTG GAATTAGCATGAGCC AATGGGGGCG chr1:97181050-97181150 - 37 9.09e-05 GAGCTGACCA GCATTAACATCAAAA CAGAGATCTT chr9:77108250-77108350 + 31 9.09e-05 TGTTGTCATG AATTTTGCATTCTCA GGTAGGAAAT chr7:116778957-116779057 - 30 9.09e-05 GTTTTGTTTT AAAGTTACATAATAA TAACCTCCCT chr14:41085348-41085448 - 70 9.80e-05 ACAAATCATT TCATCAGTATATTAA AAATAATCCA chr4:93200379-93200479 + 25 1.05e-04 AGACAATGAT GCGTTTACATTTCTA TGGTAATGAT chr7:25901756-25901856 - 35 1.05e-04 TCGCGGTTTC TCATTTACATGCAGC CACACTATTG chr11:44692479-44692579 + 15 1.13e-04 tctaaagttg aaatttatatttaaa aaggaagcaa chr19:54974936-54975036 + 55 1.13e-04 CCTTCTCAAG TGATTTACATGTGTC CCGCCCCGTT chr3:110317702-110317802 - 37 1.13e-04 TGAAGAGTTT AAGTCAGCATAAAGA AATGCATGAG chr18:9574678-9574778 + 80 1.22e-04 AACGAATGCT TATTTTACATACTTT TAAAAT chr6:26220433-26220533 - 50 1.22e-04 TTGGGGTGAA GATTTAACATTTAAA TGAGTTATAA chr8:9807450-9807550 - 26 1.22e-04 CTAGGTGGCA TAATGTGCATATCAG CACCACACTG chr5:101022152-101022252 - 66 1.40e-04 ACTAGCATTC TCAATTACATTATAA AGGACAAATC chr16:7063820-7063920 - 27 1.40e-04 TTTGAGCATT TATTCTGCATACACA ATTGCCTGTC chr5:151625992-151626092 - 36 1.40e-04 ATCACATAAA GAATAAACATAACTA ACTTCCAACT chr2:148795290-148795390 + 76 1.49e-04 tatttatgag tgatatacatTACAA AAGAACAAAC chr18:70111918-70112018 - 26 1.60e-04 TTAAGAAGAT ATATATGCATTTCAA AAGAGCAGAG chr16:7652508-7652608 + 20 1.71e-04 gacataacag acatttacagaatac cttttccaac chr9:136324629-136324729 - 17 1.71e-04 GGTGGGGAGC TCGTTAGCATACGGG GCGGGGCTCG chr3:67039162-67039262 + 34 1.82e-04 TCAGCCATCG GGATTAACATACTGC TGGGCCAGGG chr20:10332948-10333048 + 34 1.94e-04 gtagattatt cagttagcatatctg gttgcaatgt chr11:41136407-41136507 + 8 2.34e-04 tAAAAAG TTATAAACATTAAAA ATGTTTTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATAWNWA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:50825679-50825779 1.3e-08 52_[-2]_33 chr12:9517117-9517217 1.3e-08 54_[+2]_31 chrX:27076024-27076124 3.6e-08 6_[-2]_79 chr12:14867316-14867416 3.6e-08 28_[-2]_57 chr8:59461424-59461524 6.2e-08 12_[+2]_73 chr3:37343494-37343594 6.2e-08 32_[-2]_53 chr11:14369549-14369649 6.2e-08 9_[+2]_76 chr18:72511985-72512085 2.2e-07 13_[-2]_72 chr4:136304858-136304958 2.2e-07 57_[-2]_28 chr10:20546291-20546391 2.9e-07 58_[+2]_27 chr5:120187802-120187902 3.9e-07 21_[+2]_64 chr20:5950182-5950282 3.9e-07 5_[-2]_80 chr2:214552731-214552831 5e-07 41_[-2]_44 chr5:12330907-12331007 6.2e-07 33_[+2]_52 chr4:185114558-185114658 6.2e-07 77_[+2]_8 chr10:99239630-99239730 6.2e-07 40_[+2]_45 chr7:14024610-14024710 6.2e-07 74_[+2]_11 chr3:31183530-31183630 7.4e-07 18_[-2]_67 chr1:45917895-45917995 7.4e-07 21_[+2]_64 chr4:27892317-27892417 7.4e-07 23_[+2]_62 chr11:63298741-63298841 7.4e-07 61_[-2]_24 chr6:133490972-133491072 8.9e-07 50_[-2]_35 chr12:76449292-76449392 8.9e-07 45_[-2]_40 chr15:80681679-80681779 1.1e-06 3_[-2]_82 chr4:85487088-85487188 1.1e-06 51_[+2]_34 chr3:164658699-164658799 1.1e-06 25_[+2]_60 chr3:21683397-21683497 1.1e-06 2_[+2]_83 chr2:70847159-70847259 1.4e-06 23_[+2]_62 chr6:164899214-164899314 1.4e-06 69_[-2]_16 chr1:230563708-230563808 1.4e-06 20_[+2]_65 chr7:7937057-7937157 1.4e-06 24_[-2]_61 chr3:104238661-104238761 1.6e-06 85_[+2] chr4:133903295-133903395 1.6e-06 70_[-2]_15 chr3:78396319-78396419 1.6e-06 68_[+2]_17 chr3:77328049-77328149 1.9e-06 70_[-2]_15 chr5:34475095-34475195 1.9e-06 82_[-2]_3 chr8:72928396-72928496 1.9e-06 38_[+2]_47 chr2:152085-152185 2.2e-06 43_[+2]_42 chr6:129275817-129275917 2.2e-06 56_[-2]_29 chr21:17131791-17131891 2.2e-06 39_[-2]_46 chr7:19119605-19119705 2.7e-06 45_[-2]_40 chr3:146222264-146222364 2.7e-06 50_[+2]_35 chr18:60499561-60499661 2.7e-06 48_[+2]_37 chr20:37321040-37321140 2.7e-06 [-2]_85 chr5:12332397-12332497 2.7e-06 8_[-2]_77 chr7:26775613-26775713 2.7e-06 84_[-2]_1 chr1:99603171-99603271 3.1e-06 74_[+2]_11 chr7:70322682-70322782 3.1e-06 57_[-2]_28 chr4:189029220-189029320 3.1e-06 69_[+2]_16 chr15:26570693-26570793 3.1e-06 8_[-2]_77 chr6:88829451-88829551 3.7e-06 72_[-2]_13 chr18:60544176-60544276 3.7e-06 15_[+2]_70 chr12:77266118-77266218 3.7e-06 51_[+2]_34 chr9:120031206-120031306 4.2e-06 72_[+2]_13 chr20:6795702-6795802 4.2e-06 70_[-2]_15 chr9:26152235-26152335 4.2e-06 73_[+2]_12 chr5:93209819-93209919 4.9e-06 67_[-2]_18 chr18:67066312-67066412 5.6e-06 81_[-2]_4 chrX:50357311-50357411 5.6e-06 26_[+2]_59 chr3:89428231-89428331 5.6e-06 15_[+2]_70 chr4:163084977-163085077 5.6e-06 14_[+2]_71 chr5:71358881-71358981 6.5e-06 47_[-2]_38 chr11:43975881-43975981 6.5e-06 82_[-2]_3 chr9:128456531-128456631 6.5e-06 7_[-2]_78 chr19:13763594-13763694 6.5e-06 3_[+2]_82 chr4:159248693-159248793 6.5e-06 25_[-2]_60 chr3:138564728-138564828 6.5e-06 36_[+2]_49 chr11:69336331-69336431 6.5e-06 6_[-2]_79 chr6:139298892-139298992 7.4e-06 27_[+2]_58 chr14:67735183-67735283 7.4e-06 26_[+2]_59 chr7:76302666-76302766 8.3e-06 23_[+2]_62 chr10:115472512-11547261 8.3e-06 44_[+2]_41 chr5:90680440-90680540 9.4e-06 17_[-2]_68 chr6:62737195-62737295 9.4e-06 65_[-2]_20 chr9:10339050-10339150 9.4e-06 71_[+2]_14 chr17:49990323-49990423 1.1e-05 38_[+2]_47 chr5:54920928-54921028 1.1e-05 33_[+2]_52 chr13:102519802-10251990 1.1e-05 74_[+2]_11 chr11:94383101-94383201 1.2e-05 59_[+2]_26 chrX:150645144-150645244 1.3e-05 51_[-2]_34 chr19:50143341-50143441 1.3e-05 9_[-2]_76 chr18:47088177-47088277 1.3e-05 46_[-2]_39 chr6:135572012-135572112 1.5e-05 58_[+2]_27 chr7:136084181-136084281 1.7e-05 82_[-2]_3 chr3:115978762-115978862 1.7e-05 35_[+2]_50 chr1:183603211-183603311 1.7e-05 76_[+2]_9 chr13:104833594-10483369 1.7e-05 48_[-2]_37 chr8:97855833-97855933 1.9e-05 8_[-2]_77 chr8:103395185-103395285 1.9e-05 4_[+2]_81 chr2:204598883-204598983 1.9e-05 30_[-2]_55 chr10:73104320-73104420 2.1e-05 61_[+2]_24 chr1:154159803-154159903 2.1e-05 79_[-2]_6 chr2:162225781-162225881 2.3e-05 78_[-2]_7 chr1:220007688-220007788 2.8e-05 44_[-2]_41 chr8:71291932-71292032 3e-05 44_[+2]_41 chr2:8820859-8820959 3e-05 69_[-2]_16 chr2:238107864-238107964 3e-05 28_[+2]_57 chr2:69677849-69677949 3e-05 52_[-2]_33 chr9:3088192-3088292 3.3e-05 26_[-2]_59 chr20:6745286-6745386 3.3e-05 85_[-2] chr5:159593226-159593326 3.7e-05 83_[-2]_2 chr12:28613125-28613225 3.7e-05 1_[-2]_84 chr6:110175853-110175953 3.7e-05 17_[-2]_68 chr14:79329287-79329387 3.7e-05 83_[+2]_2 chr2:190983922-190984022 4e-05 9_[+2]_76 chr11:31264089-31264189 4e-05 15_[-2]_70 chr2:24270229-24270329 4e-05 43_[-2]_42 chr12:131432640-13143274 4.4e-05 22_[-2]_63 chr6:3166336-3166436 4.4e-05 60_[-2]_25 chr1:59170016-59170116 4.4e-05 17_[-2]_68 chr10:52378861-52378961 4.4e-05 77_[-2]_8 chr11:76653225-76653325 4.8e-05 80_[+2]_5 chr10:55357437-55357537 5.2e-05 41_[+2]_44 chr2:201068131-201068231 5.2e-05 56_[+2]_29 chr11:115374994-11537509 5.2e-05 42_[-2]_43 chr21:37469326-37469426 5.2e-05 19_[-2]_66 chr2:104832047-104832147 5.2e-05 80_[+2]_5 chr20:1986514-1986614 5.2e-05 68_[+2]_17 chr14:34420329-34420429 5.7e-05 22_[-2]_63 chr5:95806980-95807080 5.7e-05 42_[+2]_43 chr4:140090978-140091078 6.2e-05 10_[-2]_75 chr7:43331226-43331326 6.7e-05 85_[-2] chr1:11905619-11905719 6.7e-05 76_[+2]_9 chr5:51177684-51177784 6.7e-05 71_[-2]_14 chr7:130775647-130775747 6.7e-05 63_[-2]_22 chr16:11730077-11730177 6.7e-05 34_[+2]_51 chr11:46559422-46559522 6.7e-05 80_[+2]_5 chr2:139034649-139034749 7.2e-05 51_[-2]_34 chr16:8076294-8076394 7.2e-05 1_[-2]_84 chr10:89733292-89733392 7.8e-05 30_[+2]_55 chr21:44377036-44377136 7.8e-05 81_[-2]_4 chr1:6112407-6112507 7.8e-05 56_[+2]_29 chr8:5023575-5023675 7.8e-05 2_[+2]_83 chr7:138867140-138867240 8.4e-05 78_[-2]_7 chr11:69453708-69453808 8.4e-05 55_[-2]_30 chr1:97181050-97181150 9.1e-05 36_[-2]_49 chr9:77108250-77108350 9.1e-05 30_[+2]_55 chr7:116778957-116779057 9.1e-05 29_[-2]_56 chr14:41085348-41085448 9.8e-05 69_[-2]_16 chr4:93200379-93200479 0.00011 24_[+2]_61 chr7:25901756-25901856 0.00011 34_[-2]_51 chr11:44692479-44692579 0.00011 14_[+2]_71 chr19:54974936-54975036 0.00011 54_[+2]_31 chr3:110317702-110317802 0.00011 36_[-2]_49 chr18:9574678-9574778 0.00012 79_[+2]_6 chr6:26220433-26220533 0.00012 49_[-2]_36 chr8:9807450-9807550 0.00012 25_[-2]_60 chr5:101022152-101022252 0.00014 65_[-2]_20 chr16:7063820-7063920 0.00014 26_[-2]_59 chr5:151625992-151626092 0.00014 35_[-2]_50 chr2:148795290-148795390 0.00015 75_[+2]_10 chr18:70111918-70112018 0.00016 25_[-2]_60 chr16:7652508-7652608 0.00017 19_[+2]_66 chr9:136324629-136324729 0.00017 16_[-2]_69 chr3:67039162-67039262 0.00018 33_[+2]_52 chr20:10332948-10333048 0.00019 33_[+2]_52 chr11:41136407-41136507 0.00023 7_[+2]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATAWNWA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WMATTWRCATAWNWA width=15 seqs=157 chr20:50825679-50825779 ( 53) TCATTTGCATATTAA 1 chr12:9517117-9517217 ( 55) TCATTTGCATATGAA 1 chrX:27076024-27076124 ( 7) ACATTTGCATAATAA 1 chr12:14867316-14867416 ( 29) ACATTTGCATAATAA 1 chr8:59461424-59461524 ( 13) TCATTAGCATAACAA 1 chr3:37343494-37343594 ( 33) ACATTTGCATAACAA 1 chr11:14369549-14369649 ( 10) TCATTAGCATAACAA 1 chr18:72511985-72512085 ( 14) AAATTAGCATAAGAA 1 chr4:136304858-136304958 ( 58) TCATTAACATAAGAA 1 chr10:20546291-20546391 ( 59) TCATTAACATAACAA 1 chr5:120187802-120187902 ( 22) TAATTAGCATAAGCA 1 chr20:5950182-5950282 ( 6) TAATTAACATATTAA 1 chr2:214552731-214552831 ( 42) AAATTTGCATATGTA 1 chr5:12330907-12331007 ( 34) GCATTTGCATATTAA 1 chr4:185114558-185114658 ( 78) TAATTAGCATATGGA 1 chr10:99239630-99239730 ( 41) GCATTTGCATATTAA 1 chr7:14024610-14024710 ( 75) TCATTAACATATAAA 1 chr3:31183530-31183630 ( 19) ACATTAACATATGAA 1 chr1:45917895-45917995 ( 22) AAATTAACATAATAA 1 chr4:27892317-27892417 ( 24) AAATTTGCATAAATA 1 chr11:63298741-63298841 ( 62) TCATTAGCATAAGAC 1 chr6:133490972-133491072 ( 51) TGATTTGCATAAGAA 1 chr12:76449292-76449392 ( 46) AAATTTGCATTTTAA 1 chr15:80681679-80681779 ( 4) TAATTTACATATACA 1 chr4:85487088-85487188 ( 52) ACATTTACATATGCA 1 chr3:164658699-164658799 ( 26) TAATTAGCATACTAA 1 chr3:21683397-21683497 ( 3) TCATCTGCATAATAA 1 chr2:70847159-70847259 ( 24) TCATCTGCATAACAA 1 chr6:164899214-164899314 ( 70) TAATTAACATATGTA 1 chr1:230563708-230563808 ( 21) TAATTTGCATTTGTA 1 chr7:7937057-7937157 ( 25) TAATTAACATATGTA 1 chr3:104238661-104238761 ( 86) AAATTTGCATTTAAA 1 chr4:133903295-133903395 ( 71) TAATTTGCATTTCTA 1 chr3:78396319-78396419 ( 69) CAATTTACATATTAA 1 chr3:77328049-77328149 ( 71) TCATTTGCATAATGT 1 chr5:34475095-34475195 ( 83) TCATTTGCATAAGGT 1 chr8:72928396-72928496 ( 39) ACATTAGCATACTAA 1 chr2:152085-152185 ( 44) TCATTTACATAAAAT 1 chr6:129275817-129275917 ( 57) AAATTTACATATATA 1 chr21:17131791-17131891 ( 40) TCATTTGCATGATAA 1 chr7:19119605-19119705 ( 46) TAATTAGCATATAAT 1 chr3:146222264-146222364 ( 51) TAATTAGCATATAAT 1 chr18:60499561-60499661 ( 49) TAATTAGCATTTTCA 1 chr20:37321040-37321140 ( 1) TCATTTGCATACAGA 1 chr5:12332397-12332497 ( 9) AAATTTGCATTTGTA 1 chr7:26775613-26775713 ( 85) TAATTAGCATATAAT 1 chr1:99603171-99603271 ( 75) AAATCTGCATAACAA 1 chr7:70322682-70322782 ( 58) TCATCTACATAACAA 1 chr4:189029220-189029320 ( 70) AAATTAACATATCTA 1 chr15:26570693-26570793 ( 9) TCATCTACATAACAA 1 chr6:88829451-88829551 ( 73) TAGTTTGCATAAGAA 1 chr18:60544176-60544276 ( 16) TCATTAGCATAGTGA 1 chr12:77266118-77266218 ( 52) GCATTTGCATACTAA 1 chr9:120031206-120031306 ( 73) TCATTAGCATAACAG 1 chr20:6795702-6795802 ( 71) AAATTAACATTTGAA 1 chr9:26152235-26152335 ( 74) AAATTAACATTACAA 1 chr5:93209819-93209919 ( 68) TCATTAGCATAAACT 1 chr18:67066312-67066412 ( 82) AAATTTGCATAAACT 1 chrX:50357311-50357411 ( 27) AAATTAGCATAACTC 1 chr3:89428231-89428331 ( 16) AAATTAGCATATTCC 1 chr4:163084977-163085077 ( 15) TATTTTGCATATCAA 1 chr5:71358881-71358981 ( 48) CCATTAACATATTTA 1 chr11:43975881-43975981 ( 83) CCATCTGCATAATAA 1 chr9:128456531-128456631 ( 8) TAATTTGCATTATGC 1 chr19:13763594-13763694 ( 4) CCATCTGCATAATAA 1 chr4:159248693-159248793 ( 26) ACATTTACATATTGC 1 chr3:138564728-138564828 ( 37) ACATTTACATAATCT 1 chr11:69336331-69336431 ( 7) ATATTTGCATAACTA 1 chr6:139298892-139298992 ( 28) TAATTTGCATTTCCC 1 chr14:67735183-67735283 ( 27) TAATTAGCATATAGT 1 chr7:76302666-76302766 ( 24) CCATTTGCATATGGC 1 chr10:115472512-11547261 ( 45) TCATTTGCATAGGGC 1 chr5:90680440-90680540 ( 18) TAGTTTGCATATTTA 1 chr6:62737195-62737295 ( 66) TCATTAACATAAACT 1 chr9:10339050-10339150 ( 72) TAATTTGCATAAAGG 1 chr17:49990323-49990423 ( 39) GAATTTGCATATCTC 1 chr5:54920928-54921028 ( 34) TGATTAGCATATCAC 1 chr13:102519802-10251990 ( 75) CAATTTGCATAATGT 1 chr11:94383101-94383201 ( 60) TCATTTACATAGAAT 1 chrX:150645144-150645244 ( 52) TAATCAACATATGCA 1 chr19:50143341-50143441 ( 10) TCATTAGCATAGCCC 1 chr18:47088177-47088277 ( 47) TGATTTGCATAATTT 1 chr6:135572012-135572112 ( 59) CAATTAGCATTTCGA 1 chr7:136084181-136084281 ( 83) CTATTTGCATATCTA 1 chr3:115978762-115978862 ( 36) TCATTTACATTCAGA 1 chr1:183603211-183603311 ( 77) ACATTTACATTTTTC 1 chr13:104833594-10483369 ( 49) TCATCTGCATAACCT 1 chr8:97855833-97855933 ( 9) TCATCTACATTATTA 1 chr8:103395185-103395285 ( 5) AAATTAGCATTAGTT 1 chr2:204598883-204598983 ( 31) ACATTAGCATTTGCT 1 chr10:73104320-73104420 ( 62) AAATTAGCATGTCCA 1 chr1:154159803-154159903 ( 80) ATATTTACATAGGAA 1 chr2:162225781-162225881 ( 79) TAGTTAACATAAGCA 1 chr1:220007688-220007788 ( 45) CCATTTGCATAGGGC 1 chr8:71291932-71292032 ( 45) TAATTAACATACAGC 1 chr2:8820859-8820959 ( 70) ACATTTACATACACT 1 chr2:238107864-238107964 ( 29) AAATTAACATATGGG 1 chr2:69677849-69677949 ( 53) TAATCAACATTATCA 1 chr9:3088192-3088292 ( 27) CCATTTGCATAGTGT 1 chr20:6745286-6745386 ( 86) AAATCAACATTAAAA 1 chr5:159593226-159593326 ( 84) AGATTAGCATGAGAA 1 chr12:28613125-28613225 ( 2) ACATTTGCATGATAG 1 chr6:110175853-110175953 ( 18) TCATTAGCATGACTT 1 chr14:79329287-79329387 ( 84) AATTTTGCATTAGTA 1 chr2:190983922-190984022 ( 10) TGATTTGCATAGGGC 1 chr11:31264089-31264189 ( 16) CTATTTGCATAACTC 1 chr2:24270229-24270329 ( 44) TAATGTGCATATTCA 1 chr12:131432640-13143274 ( 23) CCATTTACATAGCCC 1 chr6:3166336-3166436 ( 61) GAATTTACATTGTCA 1 chr1:59170016-59170116 ( 18) CAATTTACATTGCCA 1 chr10:52378861-52378961 ( 78) TGATTTACATAAGTG 1 chr11:76653225-76653325 ( 81) TGATTTGCATTTATT 1 chr10:55357437-55357537 ( 42) TGATTTACATTGTCA 1 chr2:201068131-201068231 ( 57) CCATTTACATAGACC 1 chr11:115374994-11537509 ( 43) ATATTTGCATACGCC 1 chr21:37469326-37469426 ( 20) GAATCTGCATTAATA 1 chr2:104832047-104832147 ( 81) GCATTTGTATATTAA 1 chr20:1986514-1986614 ( 69) GTATTTGCATATGTT 1 chr14:34420329-34420429 ( 23) CTATTTACATTTTCA 1 chr5:95806980-95807080 ( 43) GAGTTTGCATAACAT 1 chr4:140090978-140091078 ( 11) TCTTTTACATACAGA 1 chr7:43331226-43331326 ( 86) AAATTTACATCTATA 1 chr1:11905619-11905719 ( 77) CAGTTAGCATAAGAT 1 chr5:51177684-51177784 ( 72) TTGTTAACATAAAAA 1 chr7:130775647-130775747 ( 64) GAATCTACATTTTTA 1 chr16:11730077-11730177 ( 35) CTATTTGCATAGCAC 1 chr11:46559422-46559522 ( 81) TGATTTACATCAGAA 1 chr2:139034649-139034749 ( 52) AAATCTACATAAGTG 1 chr16:8076294-8076394 ( 2) TCATTTGTATTTTGA 1 chr10:89733292-89733392 ( 31) TCTTTAACATTTTAC 1 chr21:44377036-44377136 ( 82) ATTTTTGCATAAACA 1 chr1:6112407-6112507 ( 57) TTTTTAGCATAAATA 1 chr8:5023575-5023675 ( 3) CAATTAACATGCGAA 1 chr7:138867140-138867240 ( 79) AAATCTACATTGTTA 1 chr11:69453708-69453808 ( 56) GAATTAGCATGAGCC 1 chr1:97181050-97181150 ( 37) GCATTAACATCAAAA 1 chr9:77108250-77108350 ( 31) AATTTTGCATTCTCA 1 chr7:116778957-116779057 ( 30) AAAGTTACATAATAA 1 chr14:41085348-41085448 ( 70) TCATCAGTATATTAA 1 chr4:93200379-93200479 ( 25) GCGTTTACATTTCTA 1 chr7:25901756-25901856 ( 35) TCATTTACATGCAGC 1 chr11:44692479-44692579 ( 15) AAATTTATATTTAAA 1 chr19:54974936-54975036 ( 55) TGATTTACATGTGTC 1 chr3:110317702-110317802 ( 37) AAGTCAGCATAAAGA 1 chr18:9574678-9574778 ( 80) TATTTTACATACTTT 1 chr6:26220433-26220533 ( 50) GATTTAACATTTAAA 1 chr8:9807450-9807550 ( 26) TAATGTGCATATCAG 1 chr5:101022152-101022252 ( 66) TCAATTACATTATAA 1 chr16:7063820-7063920 ( 27) TATTCTGCATACACA 1 chr5:151625992-151626092 ( 36) GAATAAACATAACTA 1 chr2:148795290-148795390 ( 76) TGATATACATTACAA 1 chr18:70111918-70112018 ( 26) ATATATGCATTTCAA 1 chr16:7652508-7652608 ( 20) ACATTTACAGAATAC 1 chr9:136324629-136324729 ( 17) TCGTTAGCATACGGG 1 chr3:67039162-67039262 ( 34) GGATTAACATACTGC 1 chr20:10332948-10333048 ( 34) CAGTTAGCATATCTG 1 chr11:41136407-41136507 ( 8) TTATAAACATTAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATAWNWA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 45924 bayes= 9.11629 E= 3.4e-112 11 -92 -116 83 72 79 -158 -171 168 -1394 -184 -209 -541 -1394 -516 186 -341 -92 -416 163 49 -1394 -1394 119 59 -1394 137 -1394 -1394 209 -1394 -341 188 -1394 -1394 -1394 -1394 -1394 -516 187 134 -358 -199 -20 63 -116 -126 49 -28 -4 12 17 63 -26 -52 -24 119 -46 -199 -77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATAWNWA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 157 E= 3.4e-112 0.292994 0.121019 0.101911 0.484076 0.445860 0.394904 0.076433 0.082803 0.872611 0.000000 0.063694 0.063694 0.006369 0.000000 0.006369 0.987261 0.025478 0.121019 0.012739 0.840764 0.382166 0.000000 0.000000 0.617834 0.407643 0.000000 0.592357 0.000000 0.000000 0.974522 0.000000 0.025478 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.006369 0.993631 0.687898 0.019108 0.057325 0.235669 0.420382 0.101911 0.095541 0.382166 0.222930 0.222930 0.248408 0.305732 0.420382 0.191083 0.159236 0.229299 0.617834 0.165605 0.057325 0.159236 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WMATTWRCATAWNWA MEME-2 regular expression -------------------------------------------------------------------------------- [TA][AC]ATT[TA][GA]CAT[AT][AT][TGAC][AT]A -------------------------------------------------------------------------------- Time 435.40 secs. ******************************************************************************** ******************************************************************************** MOTIF GSCVSSSSSBGSSSBGGRSSBGGMGSSSSS MEME-3 width = 30 sites = 44 llr = 586 E-value = 1.3e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCVSSSSSBGSSSBGGRSSBGGMGSSSSS MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::13:11:1:1:::1::42113:321211: pos.-specific C 246353344316334132333135:44354 probability G 86345656345465297355357:633436 matrix T ::::::2:133:113::11121:22111:1 bits 2.1 1.9 1.7 1.5 * * Relative 1.3 * ** Entropy 1.1 ** * ** * (19.2 bits) 0.9 *** * * ** ** * * 0.6 *** ** * *** ** *** ** 0.4 *** ** * ***** ** * **** ** 0.2 ****************************** 0.0 ------------------------------ Multilevel GGCGCGGGCGGCGGCGGAGGGGGCGCCGCG consensus CCGCGCCCGCTGCCT CGCCCACATGGCGC sequence A T G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCVSSSSSBGSSSBGGRSSBGGMGSSSSS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr8:41753441-41753541 - 60 1.79e-10 GGTGGGGCGC GGCGCCCGGTGCGGCGGAGTTGGCGGCACC CGAGCGGGGA chr4:8581990-8582090 - 57 2.53e-10 AGCAGGAGCA GCCCGGGGCCGCCCTGGAGGCAGCGCAACC GCGGTGCTGT chrX:199983-200083 + 29 9.28e-10 CTTGGTGTCA GGCCCGGGTGGGGGCGGCCGTGGTGCCAGG CCCGGGTGGG chr7:25901756-25901856 - 57 1.47e-09 TGGGAAATTG GGCGGAGCCGGGGGCGGGGGGAGATGCTCG CGGTTTCTCA chr11:115374994-11537509 - 3 1.71e-09 CCTCCCCTTG GCCCCGCCCCTAGGTGGCGCGGGCGCGCCG CC chr20:48099185-48099285 + 2 6.14e-09 G GGGCCGCCCCTCGGGGCGGGGAGAGGGCCC CAAGAGATGC chr12:57634738-57634838 + 32 9.17e-09 GGTGACAGGA GGCGCCTGGGGCTGTGGACTAGGAGGCCCG TGCACCAGGG chr16:89992506-89992606 + 9 1.05e-08 CCTGCGGA GCCGCGGGCCGGGCGGGAACCGCATTCGGG TCCTGGAGGG chr20:10199717-10199817 + 16 2.53e-08 ACTGCAGGCT GGCGGGAGGCGGGCGGGTCGTGCCGGGTGG GAGGGCTCTG chr20:30556178-30556278 - 33 2.53e-08 ATGCAGAGGC GGCAGCAGCGGCGGCGGTAGGCGCTGGCCG AGGAGGGCGC chr22:39638906-39639006 + 66 2.85e-08 CGTGCTCTGG GGCCGGGCATGCCCTGCGCGTGCCGGAGGG CGTCC chr5:175223517-175223617 - 39 3.62e-08 TGACCCGATA GGGACCCGGTGCGGCGCGGGAGCTGTCCCC GAGATGGTGC chr12:11653361-11653461 - 70 3.62e-08 C CCCGGCGGTGGCGGCGGCAGCGGTGCCTAG GAGGGCCGGC chr11:122852514-12285261 + 7 3.62e-08 GCCAGA GGCAGAGGGGAGGGTGCGGGAGGCTCGGGG CGGGGCGGGG chr20:44685926-44686026 - 51 5.14e-08 GTGATGACCT CGCGGCCGCCGCCGCGGACCAGCATCACCC GGTCCAGGTG chr10:35931076-35931176 - 40 7.22e-08 GCGATTGGCT CGCGGGGCTGGGGGCGGAGACCGAGTCCGC GCTGTATAAA chr20:61747601-61747701 + 14 7.22e-08 GAGCACAGCT GCAGGGAGCTGCGCGGGGGGAGCCGCAGAG CTGGGCACTT chr10:120355420-12035552 + 68 8.06e-08 CGCCACACGA GCCCCCTGCTTGGCTGCAGCGCGCTCAGCG GGC chr1:230562137-230562237 + 53 1.89e-07 GGTGCTTCCA GCGGTCCGGGCCCGCGGACGGAGTGCGGGC CGATCCCGCT chr19:55727921-55728021 - 68 1.89e-07 GAA GGACCGTCGTGCCCTGGAGCCTGCGACCGC CACGCCCTTG chr6:146349183-146349283 + 62 2.09e-07 AAGGCGGCAG GGCTCAGGCTGCCGCGGCGAGAGCAACCCG GAAGCTCCC chr12:2861843-2861943 + 8 2.09e-07 CTTAAGC GGCGTCTGCTCGGGCGCGGGGTGTGGCGCG GCGGGTGAGC chr1:33352147-33352247 - 69 2.31e-07 GC GCCCGGCGCGTGGCCCCTCCTGGAGGGGGC GCTCCAGGGC chr2:30142764-30142864 + 28 2.31e-07 CCAACTGCTT GGCACGCCGGAGCTTGCGCACGGAGCCGCC CTTCAGCACC chr3:9593865-9593965 - 29 4.15e-07 TACTGCGTGG GCAGCGGGCTGGCGGGCCGCGAGCTCACCT GCCGGGGCTC chr1:2457609-2457709 + 49 4.15e-07 GGTCCGAGAG GCCCGGGGCTGCGGGCGGGCGGGCGGTTAT CCTCCAGAGA chr1:22952670-22952770 + 50 6.03e-07 GCAGAGGGCT GGGAGAGGGGGGTGCGGACAGGGCAGTGGC AGCTGTCATT chr20:44657848-44657948 + 18 6.60e-07 GAGGAGAGGA GGCAGCTCTGGGGTTAGAGGCGGAGCGGGG GCCACCTCCT chr1:65775495-65775595 + 8 7.22e-07 GCCCGGC CCGAGGCCCCCCCGTGGTCCCCCAGCCCCG GTTTGCGAGA chr22:37099441-37099541 - 6 7.90e-07 GGAAAGGCGG CCCCCGCTCTGCGCTGGCCTTGCTGCCCCG GGGAG chr9:136324629-136324729 - 47 7.90e-07 ATTATTGTAG GGGGCGGGACCCGCAGGCTGCGGCGAGGAG CTGGGGGTGG chr1:37720800-37720900 + 68 9.41e-07 TCGGGCGAAG CCAGGGGCCCACGTGGGAGGGAGCTCCAGG AGA chr18:903716-903816 + 15 9.41e-07 TGGACAGCTC CGCAGGCCGCGCTCCGGAGGCAGCATGAGC TCTCATCAAT chr1:37486083-37486183 - 3 1.03e-06 AGAGCAGCCA GGGCCGGGGGTAGCCGGTGGCGCCATCTGC AT chr20:34968000-34968100 + 63 1.32e-06 TGAGGCTAAG GCAGCCGCAGAGCGGGGAAGGAGAGGAGCC TGGAGTAG chr19:50143341-50143441 + 67 1.56e-06 CGCTCTCAGC GGGAGGGCGGTCTGTGGGCGTGGCTATGCT AATA chr8:50824108-50824208 - 26 1.56e-06 GCTGCCCGTG GCGACGACAGTGGCGGCAAGGACAGCGGCG GCGGCAGCGT chr14:36004208-36004308 - 21 2.95e-06 TGGAGGCCCT GCCTCGGGGCGCTGTCCGGGTGCTGATCCG CCCCGGAGCT chr17:77290580-77290680 - 51 3.18e-06 CCGGAGTTCG GCCGCGTGGCTGGCAGCGTCTCCCACCCGC AGGTCGCTGT chr12:113917788-11391788 - 2 3.18e-06 CCCCTTGCTC CGGCGACGGCGCCGCCGATTCAGCACCGCG G chr11:66056984-66057084 - 71 3.98e-06 . GCCACGCGCTCGCTAGGAGCGTGTGGTTCG AGACCCCAAA chr1:38260566-38260666 + 26 5.31e-06 AAGGTCCCAG GGCGCCTCCTTCGTAGGCTATGGAGGGGAG GCTCACTTAT chr8:9807450-9807550 + 63 6.54e-06 ATTGAGGAGC CGGGGAGCTGTCCCTGCAACAGCCACAGCG AACTCCTG chr5:151303906-151304006 - 6 9.76e-06 ACGCCTCGCA GCCGCCGCTGTCCGTGGTATCTACGACCCC CTCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCVSSSSSBGSSSBGGRSSBGGMGSSSSS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:41753441-41753541 1.8e-10 59_[-3]_11 chr4:8581990-8582090 2.5e-10 56_[-3]_14 chrX:199983-200083 9.3e-10 28_[+3]_42 chr7:25901756-25901856 1.5e-09 56_[-3]_14 chr11:115374994-11537509 1.7e-09 2_[-3]_68 chr20:48099185-48099285 6.1e-09 1_[+3]_69 chr12:57634738-57634838 9.2e-09 31_[+3]_39 chr16:89992506-89992606 1e-08 8_[+3]_62 chr20:10199717-10199817 2.5e-08 15_[+3]_55 chr20:30556178-30556278 2.5e-08 32_[-3]_38 chr22:39638906-39639006 2.9e-08 65_[+3]_5 chr5:175223517-175223617 3.6e-08 38_[-3]_32 chr12:11653361-11653461 3.6e-08 69_[-3]_1 chr11:122852514-12285261 3.6e-08 6_[+3]_64 chr20:44685926-44686026 5.1e-08 50_[-3]_20 chr10:35931076-35931176 7.2e-08 39_[-3]_31 chr20:61747601-61747701 7.2e-08 13_[+3]_57 chr10:120355420-12035552 8.1e-08 67_[+3]_3 chr1:230562137-230562237 1.9e-07 52_[+3]_18 chr19:55727921-55728021 1.9e-07 67_[-3]_3 chr6:146349183-146349283 2.1e-07 61_[+3]_9 chr12:2861843-2861943 2.1e-07 7_[+3]_63 chr1:33352147-33352247 2.3e-07 68_[-3]_2 chr2:30142764-30142864 2.3e-07 27_[+3]_43 chr3:9593865-9593965 4.2e-07 28_[-3]_42 chr1:2457609-2457709 4.2e-07 48_[+3]_22 chr1:22952670-22952770 6e-07 49_[+3]_21 chr20:44657848-44657948 6.6e-07 17_[+3]_53 chr1:65775495-65775595 7.2e-07 7_[+3]_63 chr22:37099441-37099541 7.9e-07 5_[-3]_65 chr9:136324629-136324729 7.9e-07 46_[-3]_24 chr1:37720800-37720900 9.4e-07 67_[+3]_3 chr18:903716-903816 9.4e-07 14_[+3]_56 chr1:37486083-37486183 1e-06 2_[-3]_68 chr20:34968000-34968100 1.3e-06 62_[+3]_8 chr19:50143341-50143441 1.6e-06 66_[+3]_4 chr8:50824108-50824208 1.6e-06 25_[-3]_45 chr14:36004208-36004308 2.9e-06 20_[-3]_50 chr17:77290580-77290680 3.2e-06 50_[-3]_20 chr12:113917788-11391788 3.2e-06 1_[-3]_69 chr11:66056984-66057084 4e-06 70_[-3] chr1:38260566-38260666 5.3e-06 25_[+3]_45 chr8:9807450-9807550 6.5e-06 62_[+3]_8 chr5:151303906-151304006 9.8e-06 5_[-3]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCVSSSSSBGSSSBGGRSSBGGMGSSSSS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCVSSSSSBGSSSBGGRSSBGGMGSSSSS width=30 seqs=44 chr8:41753441-41753541 ( 60) GGCGCCCGGTGCGGCGGAGTTGGCGGCACC 1 chr4:8581990-8582090 ( 57) GCCCGGGGCCGCCCTGGAGGCAGCGCAACC 1 chrX:199983-200083 ( 29) GGCCCGGGTGGGGGCGGCCGTGGTGCCAGG 1 chr7:25901756-25901856 ( 57) GGCGGAGCCGGGGGCGGGGGGAGATGCTCG 1 chr11:115374994-11537509 ( 3) GCCCCGCCCCTAGGTGGCGCGGGCGCGCCG 1 chr20:48099185-48099285 ( 2) GGGCCGCCCCTCGGGGCGGGGAGAGGGCCC 1 chr12:57634738-57634838 ( 32) GGCGCCTGGGGCTGTGGACTAGGAGGCCCG 1 chr16:89992506-89992606 ( 9) GCCGCGGGCCGGGCGGGAACCGCATTCGGG 1 chr20:10199717-10199817 ( 16) GGCGGGAGGCGGGCGGGTCGTGCCGGGTGG 1 chr20:30556178-30556278 ( 33) GGCAGCAGCGGCGGCGGTAGGCGCTGGCCG 1 chr22:39638906-39639006 ( 66) GGCCGGGCATGCCCTGCGCGTGCCGGAGGG 1 chr5:175223517-175223617 ( 39) GGGACCCGGTGCGGCGCGGGAGCTGTCCCC 1 chr12:11653361-11653461 ( 70) CCCGGCGGTGGCGGCGGCAGCGGTGCCTAG 1 chr11:122852514-12285261 ( 7) GGCAGAGGGGAGGGTGCGGGAGGCTCGGGG 1 chr20:44685926-44686026 ( 51) CGCGGCCGCCGCCGCGGACCAGCATCACCC 1 chr10:35931076-35931176 ( 40) CGCGGGGCTGGGGGCGGAGACCGAGTCCGC 1 chr20:61747601-61747701 ( 14) GCAGGGAGCTGCGCGGGGGGAGCCGCAGAG 1 chr10:120355420-12035552 ( 68) GCCCCCTGCTTGGCTGCAGCGCGCTCAGCG 1 chr1:230562137-230562237 ( 53) GCGGTCCGGGCCCGCGGACGGAGTGCGGGC 1 chr19:55727921-55728021 ( 68) GGACCGTCGTGCCCTGGAGCCTGCGACCGC 1 chr6:146349183-146349283 ( 62) GGCTCAGGCTGCCGCGGCGAGAGCAACCCG 1 chr12:2861843-2861943 ( 8) GGCGTCTGCTCGGGCGCGGGGTGTGGCGCG 1 chr1:33352147-33352247 ( 69) GCCCGGCGCGTGGCCCCTCCTGGAGGGGGC 1 chr2:30142764-30142864 ( 28) GGCACGCCGGAGCTTGCGCACGGAGCCGCC 1 chr3:9593865-9593965 ( 29) GCAGCGGGCTGGCGGGCCGCGAGCTCACCT 1 chr1:2457609-2457709 ( 49) GCCCGGGGCTGCGGGCGGGCGGGCGGTTAT 1 chr1:22952670-22952770 ( 50) GGGAGAGGGGGGTGCGGACAGGGCAGTGGC 1 chr20:44657848-44657948 ( 18) GGCAGCTCTGGGGTTAGAGGCGGAGCGGGG 1 chr1:65775495-65775595 ( 8) CCGAGGCCCCCCCGTGGTCCCCCAGCCCCG 1 chr22:37099441-37099541 ( 6) CCCCCGCTCTGCGCTGGCCTTGCTGCCCCG 1 chr9:136324629-136324729 ( 47) GGGGCGGGACCCGCAGGCTGCGGCGAGGAG 1 chr1:37720800-37720900 ( 68) CCAGGGGCCCACGTGGGAGGGAGCTCCAGG 1 chr18:903716-903816 ( 15) CGCAGGCCGCGCTCCGGAGGCAGCATGAGC 1 chr1:37486083-37486183 ( 3) GGGCCGGGGGTAGCCGGTGGCGCCATCTGC 1 chr20:34968000-34968100 ( 63) GCAGCCGCAGAGCGGGGAAGGAGAGGAGCC 1 chr19:50143341-50143441 ( 67) GGGAGGGCGGTCTGTGGGCGTGGCTATGCT 1 chr8:50824108-50824208 ( 26) GCGACGACAGTGGCGGCAAGGACAGCGGCG 1 chr14:36004208-36004308 ( 21) GCCTCGGGGCGCTGTCCGGGTGCTGATCCG 1 chr17:77290580-77290680 ( 51) GCCGCGTGGCTGGCAGCGTCTCCCACCCGC 1 chr12:113917788-11391788 ( 2) CGGCGACGGCGCCGCCGATTCAGCACCGCG 1 chr11:66056984-66057084 ( 71) GCCACGCGCTCGCTAGGAGCGTGTGGTTCG 1 chr1:38260566-38260666 ( 26) GGCGCCTCCTTCGTAGGCTATGGAGGGGAG 1 chr8:9807450-9807550 ( 63) CGGGGAGCTGTCCCTGCAACAGCCACAGCG 1 chr5:151303906-151304006 ( 6) GCCGCCGCTGTCCGTGGTATCTACGACCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCVSSSSSBGSSSBGGRSSBGGMGSSSSS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 37914 bayes= 11.8315 E= 1.3e-025 -1210 -16 180 -1210 -1210 92 131 -1210 -126 148 13 -1210 -12 26 92 -258 -1210 113 99 -258 -99 37 131 -1210 -158 37 99 -77 -1210 76 137 -357 -158 92 58 -99 -1210 37 84 12 -158 -101 126 -12 -258 131 76 -1210 -1210 48 131 -126 -1210 58 126 -126 -158 67 -16 33 -357 -133 196 -1210 -1210 37 162 -1210 59 -33 26 -99 -77 26 106 -158 -126 26 113 -126 -99 37 58 -26 -12 -101 126 -158 -357 37 158 -1210 12 119 -1210 -58 -77 -1210 148 -41 -99 92 48 -126 -58 92 26 -126 -126 58 84 -99 -126 126 58 -1210 -1210 67 131 -199 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCVSSSSSBGSSSBGGRSSBGGMGSSSSS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 44 E= 1.3e-025 0.000000 0.204545 0.795455 0.000000 0.000000 0.431818 0.568182 0.000000 0.113636 0.636364 0.250000 0.000000 0.250000 0.272727 0.431818 0.045455 0.000000 0.500000 0.454545 0.045455 0.136364 0.295455 0.568182 0.000000 0.090909 0.295455 0.454545 0.159091 0.000000 0.386364 0.590909 0.022727 0.090909 0.431818 0.340909 0.136364 0.000000 0.295455 0.409091 0.295455 0.090909 0.113636 0.545455 0.250000 0.045455 0.568182 0.386364 0.000000 0.000000 0.318182 0.568182 0.113636 0.000000 0.340909 0.545455 0.113636 0.090909 0.363636 0.204545 0.340909 0.022727 0.090909 0.886364 0.000000 0.000000 0.295455 0.704545 0.000000 0.409091 0.181818 0.272727 0.136364 0.159091 0.272727 0.477273 0.090909 0.113636 0.272727 0.500000 0.113636 0.136364 0.295455 0.340909 0.227273 0.250000 0.113636 0.545455 0.090909 0.022727 0.295455 0.681818 0.000000 0.295455 0.522727 0.000000 0.181818 0.159091 0.000000 0.636364 0.204545 0.136364 0.431818 0.318182 0.113636 0.181818 0.431818 0.272727 0.113636 0.113636 0.340909 0.409091 0.136364 0.113636 0.545455 0.340909 0.000000 0.000000 0.363636 0.568182 0.068182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCVSSSSSBGSSSBGGRSSBGGMGSSSSS MEME-3 regular expression -------------------------------------------------------------------------------- [GC][GC][CG][GCA][CG][GC][GC][GC][CG][GCT][GT][CG][GC][GC][CTG]G[GC][AG][GC][GC][GCT][GA][GC][CA][GT][CG][CG][GC][CG][GC] -------------------------------------------------------------------------------- Time 642.06 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:163697144-163697244 6.06e-01 100 chr1:22952670-22952770 2.90e-04 49_[+3(6.03e-07)]_21 chr1:175028692-175028792 9.20e-01 100 chr18:47088177-47088277 2.22e-03 46_[-2(1.34e-05)]_39 chr16:12755595-12755695 2.47e-02 2_[+1(7.31e-05)]_77 chr20:44669306-44669406 4.94e-07 69_[+1(9.51e-11)]_10 chr6:4893936-4894036 9.04e-01 100 chr6:107437557-107437657 5.57e-01 100 chr21:17131791-17131891 7.89e-03 39_[-2(2.24e-06)]_46 chr14:79329287-79329387 9.50e-02 83_[+2(3.68e-05)]_2 chr19:36466527-36466627 2.46e-06 48_[-1(1.44e-09)]_31 chr3:110317702-110317802 2.36e-01 100 chr20:34968000-34968100 4.76e-03 62_[+3(1.32e-06)]_8 chr9:136324629-136324729 2.47e-04 46_[-3(7.90e-07)]_24 chr17:65970915-65971015 3.58e-01 100 chr1:156371541-156371641 3.40e-02 100 chr1:11533497-11533597 8.32e-02 4_[+1(9.78e-05)]_75 chr6:110175853-110175953 9.94e-02 17_[-2(3.68e-05)]_68 chr4:94068563-94068663 2.93e-01 100 chr15:26570693-26570793 1.79e-02 8_[-2(3.14e-06)]_77 chr12:108608197-10860829 2.02e-01 100 chr19:54406207-54406307 1.56e-07 37_[+1(8.41e-11)]_42 chr3:119079794-119079894 4.31e-01 100 chr9:128463108-128463208 9.83e-01 100 chr8:5023575-5023675 1.68e-01 2_[+2(7.80e-05)]_83 chr18:44077506-44077606 7.44e-01 100 chr12:16942106-16942206 8.85e-01 100 chr2:204598883-204598983 4.91e-02 30_[-2(1.86e-05)]_55 chr11:69336331-69336431 1.46e-02 6_[-2(6.45e-06)]_79 chr19:15125219-15125319 1.28e-01 100 chr3:63053348-63053448 4.84e-01 100 chr12:108861869-10886196 9.81e-01 100 chr1:6112407-6112507 1.02e-01 56_[+2(7.80e-05)]_29 chr8:103395185-103395285 1.42e-02 4_[+2(1.86e-05)]_81 chr11:63298741-63298841 9.48e-04 61_[-2(7.39e-07)]_24 chr13:43167072-43167172 6.81e-01 100 chr11:69453708-69453808 9.47e-03 55_[-2(8.42e-05)]_30 chr18:55021033-55021133 7.90e-01 100 chr10:52378861-52378961 1.33e-01 77_[-2(4.38e-05)]_8 chr8:105040857-105040957 3.44e-01 100 chr3:11006334-11006434 8.95e-01 100 chr17:45222621-45222721 3.81e-01 100 chr20:61747601-61747701 7.21e-05 13_[+3(7.22e-08)]_57 chr19:17792420-17792520 2.49e-01 100 chr4:27892317-27892417 5.53e-03 23_[+2(7.39e-07)]_62 chrX:13216672-13216772 5.24e-01 100 chr6:3075566-3075666 4.28e-01 100 chr5:16178708-16178808 3.22e-01 100 chr6:163682001-163682101 2.87e-01 100 chr12:57634738-57634838 8.57e-05 31_[+3(9.17e-09)]_39 chr20:1986514-1986614 1.34e-01 68_[+2(5.21e-05)]_17 chr5:176037915-176038015 3.86e-01 100 chr5:170108264-170108364 1.58e-01 100 chr7:25901756-25901856 4.64e-07 56_[-3(1.47e-09)]_14 chr3:78396319-78396419 5.86e-04 68_[+2(1.61e-06)]_17 chr5:66123861-66123961 2.30e-01 100 chr4:8569922-8570022 6.42e-01 100 chr6:18752400-18752500 9.88e-01 100 chr12:113917788-11391788 2.47e-03 1_[-3(3.18e-06)]_69 chr8:35050033-35050133 5.29e-01 100 chr21:44377036-44377136 1.95e-01 81_[-2(7.80e-05)]_4 chr13:88150794-88150894 6.11e-01 100 chr2:27061370-27061470 1.58e-01 100 chr8:41753441-41753541 2.37e-06 25_[-3(7.22e-07)]_4_[-3(1.79e-10)]_\ 11 chr9:134674573-134674673 4.66e-01 100 chr7:26775613-26775713 1.24e-02 84_[-2(2.67e-06)]_1 chr11:46559422-46559522 8.59e-02 80_[+2(6.67e-05)]_5 chr1:30209478-30209578 4.53e-07 33_[+1(3.96e-11)]_46 chr19:18343565-18343665 2.87e-01 100 chr11:103834366-10383446 6.22e-01 100 chr14:90961607-90961707 2.40e-07 53_[-1(1.66e-11)]_26 chr12:77266118-77266218 9.21e-03 51_[+2(3.67e-06)]_34 chr6:69942784-69942884 4.64e-01 100 chr11:14369549-14369649 5.08e-04 9_[+2(6.17e-08)]_76 chr3:18385764-18385864 2.97e-01 100 chr18:35144742-35144842 5.02e-01 100 chr13:102519802-10251990 2.35e-02 74_[+2(1.06e-05)]_11 chr16:11730077-11730177 7.86e-02 34_[+2(6.67e-05)]_51 chr7:114570017-114570117 6.28e-02 100 chr5:176230753-176230853 4.41e-01 100 chr1:220007688-220007788 4.25e-02 44_[-2(2.78e-05)]_41 chr13:51743191-51743291 6.02e-03 15_[-1(7.53e-05)]_25_[-3(6.99e-05)]_\ 9 chr20:44859168-44859268 6.76e-01 100 chr14:50347880-50347980 1.08e-01 100 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63_[-2(6.67e-05)]_22 chr3:38847013-38847113 9.99e-01 100 chr1:11610746-11610846 4.97e-01 100 chr12:28613125-28613225 6.94e-03 1_[-2(3.68e-05)]_84 chr14:36004208-36004308 1.77e-03 20_[-3(2.95e-06)]_50 chr13:43645866-43645966 4.22e-01 100 chr9:38069496-38069596 1.11e-01 100 chr18:67066312-67066412 1.25e-02 81_[-2(5.61e-06)]_4 chr21:22162184-22162284 5.10e-01 100 chr7:76302666-76302766 1.65e-02 23_[+2(8.33e-06)]_31_[-2(6.15e-05)]_\ 16 chr16:7232515-7232615 3.69e-06 4_[-1(2.55e-10)]_75 chr1:33352147-33352247 1.17e-09 1_[+1(5.85e-10)]_46_[-3(2.31e-07)]_\ 2 chr9:25204910-25205010 4.76e-01 100 chr8:108507039-108507139 9.99e-01 100 chr6:21741462-21741562 9.30e-01 100 chr12:119082870-11908297 2.07e-01 100 chr7:138867140-138867240 6.01e-02 57_[-2(9.09e-05)]_6_[-2(8.42e-05)]_\ 7 chr9:77108250-77108350 2.46e-02 30_[+2(9.09e-05)]_55 chr11:43975881-43975981 1.63e-02 36_[+2(3.68e-05)]_31_[-2(6.45e-06)]_\ 3 chr9:2158219-2158319 9.76e-01 100 chr9:135457303-135457403 2.12e-09 58_[+1(7.74e-10)]_21 chrX:199983-200083 2.42e-06 28_[+3(9.28e-10)]_11_[+3(3.98e-06)]_\ 1 chr19:47940644-47940744 2.51e-01 100 chr5:129502046-129502146 9.71e-01 100 chr8:22399262-22399362 9.86e-01 100 chr9:138048360-138048460 4.82e-07 68_[+1(4.38e-10)]_11 chr18:44082230-44082330 6.69e-08 35_[-1(2.84e-10)]_44 chr6:96564354-96564454 2.60e-07 61_[+1(3.96e-11)]_18 chr9:134651895-134651995 2.70e-06 27_[-1(3.18e-10)]_52 chr8:108457017-108457117 1.23e-01 100 chr2:116354295-116354395 5.01e-01 100 chr5:3123625-3123725 9.15e-01 100 chr9:140778845-140778945 3.49e-02 100 chr17:64726516-64726616 7.25e-01 100 chr17:56197576-56197676 9.92e-01 100 chr5:90680440-90680540 4.38e-02 17_[-2(9.36e-06)]_68 chr10:119105992-11910609 8.14e-01 100 chr20:41669003-41669103 1.33e-01 100 chr16:7063820-7063920 3.08e-07 52_[+1(3.52e-10)]_27 chr19:55919476-55919576 5.78e-01 100 chr19:54431014-54431114 9.83e-06 11_[+1(8.42e-10)]_68 chr2:214552731-214552831 2.03e-03 18_[-2(9.80e-05)]_8_[-2(5.05e-07)]_\ 44 chr13:56011140-56011240 9.19e-01 100 chr4:189029220-189029320 1.89e-02 69_[+2(3.14e-06)]_16 chr6:34083118-34083218 1.75e-07 41_[-1(3.53e-11)]_38 chr8:59461424-59461524 2.13e-04 12_[+2(6.17e-08)]_73 chr12:71201770-71201870 1.48e-01 100 chr22:37099441-37099541 1.21e-04 5_[-3(7.90e-07)]_17_[+1(6.89e-05)]_\ 27 chr14:79452085-79452185 5.95e-01 100 chr3:180473411-180473511 7.88e-01 100 chr6:4889913-4890013 4.25e-02 48_[-3(3.71e-05)]_22 chr5:51177684-51177784 1.05e-01 71_[-2(6.67e-05)]_14 chr1:98513606-98513706 3.93e-01 100 chr4:8581990-8582090 1.36e-14 33_[-1(3.06e-12)]_2_[-3(2.53e-10)]_\ 14 chr18:33068499-33068599 8.86e-03 76_[-1(7.92e-06)]_3 chr3:146222264-146222364 6.90e-03 31_[-2(6.45e-06)]_4_[+2(2.67e-06)]_\ 35 chr7:154106785-154106885 8.41e-06 6_[+1(1.44e-09)]_73 chr3:104238661-104238761 7.72e-03 85_[+2(1.61e-06)] chr11:71162495-71162595 1.43e-01 100 chr2:188897166-188897266 9.96e-01 100 chr8:9807450-9807550 1.95e-05 62_[+3(6.54e-06)]_8 chr14:82541942-82542042 3.34e-07 28_[-1(6.62e-11)]_51 chr10:99751660-99751760 1.08e-01 100 chr19:5404057-5404157 5.61e-07 60_[+1(3.18e-10)]_19 chr3:77328049-77328149 2.36e-03 70_[-2(1.89e-06)]_15 chr2:190983922-190984022 2.65e-02 9_[+2(4.02e-05)]_76 chr5:6328153-6328253 7.37e-01 100 chr1:188058348-188058448 2.86e-01 100 chr5:101022152-101022252 2.60e-01 100 chr6:164899214-164899314 1.03e-02 69_[-2(1.36e-06)]_16 chr19:54974936-54975036 7.15e-02 100 chr2:8820859-8820959 6.07e-02 69_[-2(3.05e-05)]_16 chr1:11905619-11905719 3.97e-02 76_[+2(6.67e-05)]_9 chr5:159546488-159546588 1.25e-01 100 chr22:37040282-37040382 2.46e-06 63_[+1(2.55e-10)]_16 chr20:47139683-47139783 8.68e-06 13_[+1(5.31e-10)]_66 chr5:135700792-135700892 3.82e-01 100 chr4:85487088-85487188 5.94e-03 51_[+2(1.11e-06)]_34 chr6:98651117-98651217 6.77e-01 100 chr6:104570858-104570958 8.87e-01 100 chr6:135572012-135572112 3.59e-02 58_[+2(1.49e-05)]_27 chr15:44579876-44579976 7.77e-01 100 chr6:26220433-26220533 1.17e-01 100 chr1:81778126-81778226 9.78e-01 100 chr11:22359772-22359872 8.91e-01 100 chr15:80681679-80681779 7.92e-03 3_[-2(1.11e-06)]_82 chr13:79163385-79163485 1.66e-07 8_[+1(1.63e-10)]_71 chr11:66056984-66057084 1.08e-02 70_[-3(3.98e-06)] chr18:70111918-70112018 2.52e-01 100 chr6:114661920-114662020 6.51e-01 100 chr1:175712098-175712198 5.80e-01 100 chr8:93063552-93063652 3.67e-01 100 chr3:126881679-126881779 1.41e-01 100 chr9:3088192-3088292 3.51e-02 26_[-2(3.35e-05)]_26_[-2(6.15e-05)]_\ 18 chr2:149060657-149060757 9.07e-01 100 chr4:113261241-113261341 4.54e-01 100 chr16:60978940-60979040 9.69e-01 100 chr17:4396590-4396690 8.40e-07 24_[+1(1.63e-10)]_55 chr7:131955101-131955201 2.03e-01 100 chr2:63973770-63973870 2.56e-01 100 chr6:90509307-90509407 2.68e-01 100 chr10:61024905-61025005 2.85e-07 61_[-1(2.84e-10)]_18 chr5:93690924-93691024 9.13e-01 100 chr6:129275817-129275917 9.27e-03 56_[-2(2.24e-06)]_29 chr8:61588773-61588873 6.45e-01 100 chr1:37720800-37720900 4.46e-04 67_[+3(9.41e-07)]_3 chr6:10585591-10585691 8.29e-01 100 chr17:49990323-49990423 2.79e-02 38_[+2(1.06e-05)]_47 chr19:7627504-7627604 2.00e-01 100 chr2:139034649-139034749 1.76e-01 51_[-2(7.22e-05)]_34 chr8:97855833-97855933 2.80e-02 8_[-2(1.86e-05)]_77 chr20:48099185-48099285 2.52e-05 1_[+3(6.14e-09)]_8_[-3(1.71e-05)]_\ 31 chr3:48698951-48699051 7.09e-02 100 chr11:134897407-13489750 7.47e-02 100 chr6:3166336-3166436 1.03e-01 60_[-2(4.38e-05)]_25 chrX:153140550-153140650 2.36e-02 14_[+3(3.34e-05)]_56 chr7:100026588-100026688 1.17e-01 11_[+3(6.99e-05)]_59 chr7:70322682-70322782 1.15e-02 57_[-2(3.14e-06)]_28 chr1:99603171-99603271 3.90e-03 74_[+2(3.14e-06)]_11 chr5:93209819-93209919 2.24e-02 67_[-2(4.88e-06)]_18 chr4:93200379-93200479 1.21e-01 100 chr10:23164993-23165093 4.55e-01 100 chr7:51394335-51394435 1.84e-01 100 chr4:180018762-180018862 2.11e-07 10_[+1(5.10e-11)]_69 chr11:22355440-22355540 1.00e+00 100 chr1:45917895-45917995 3.72e-03 21_[+2(7.39e-07)]_64 chr8:89100590-89100690 6.07e-01 100 chr2:201068131-201068231 1.28e-01 56_[+2(5.21e-05)]_29 chr13:94342280-94342380 3.68e-06 20_[-1(2.25e-09)]_59 chr11:31259990-31260090 6.37e-01 100 chr1:230562137-230562237 4.24e-04 3_[+3(4.56e-07)]_19_[+3(1.89e-07)]_\ 18 chr2:220172782-220172882 3.00e-02 100 chr19:50490316-50490416 3.17e-05 [+1(5.35e-08)]_35_[+1(4.20e-08)]_23 chr14:93380364-93380464 7.05e-01 100 chr11:104494696-10449479 6.44e-01 100 chr4:140090978-140091078 8.83e-02 10_[-2(6.15e-05)]_75 chr14:34420329-34420429 7.03e-02 22_[-2(5.67e-05)]_63 chr20:37314298-37314398 2.70e-01 100 chr6:99237141-99237241 5.81e-01 100 chr5:141133144-141133244 7.62e-01 100 chr12:119060119-11906021 4.16e-01 100 chr11:6822329-6822429 1.52e-01 100 chr17:61994063-61994163 3.01e-01 100 chr17:33030640-33030740 2.68e-01 100 chr6:139298892-139298992 1.94e-02 27_[+2(7.38e-06)]_25_[-2(5.67e-05)]_\ 18 chr1:26735054-26735154 2.57e-01 100 chr7:136084181-136084281 5.77e-02 82_[-2(1.67e-05)]_3 chr19:12943017-12943117 2.57e-01 100 chr5:159593226-159593326 1.08e-01 83_[-2(3.68e-05)]_2 chr8:71291932-71292032 4.92e-02 26_[-2(6.15e-05)]_3_[+2(3.05e-05)]_\ 41 chr11:44692479-44692579 1.48e-01 100 chr10:35931076-35931176 3.82e-05 39_[-3(7.22e-08)]_31 chr20:30556178-30556278 3.13e-05 32_[-3(2.53e-08)]_38 chr3:191109690-191109790 8.52e-01 100 chr5:161495485-161495585 1.03e-06 47_[-1(3.98e-10)]_32 chr7:154861581-154861681 4.24e-08 19_[-1(6.75e-09)]_60 chr2:79503076-79503176 9.68e-01 100 chr3:31183530-31183630 1.96e-03 18_[-2(7.39e-07)]_67 chr12:131432640-13143274 4.41e-02 22_[-2(4.38e-05)]_63 chr18:11714291-11714391 3.68e-01 100 chrX:150645144-150645244 1.57e-02 51_[-2(1.34e-05)]_34 chr18:9574678-9574778 1.63e-01 100 chr6:19988844-19988944 9.29e-01 100 chr16:89992506-89992606 1.46e-05 8_[+3(1.05e-08)]_17_[+3(1.42e-05)]_\ 15 chr17:70161412-70161512 9.63e-01 100 chr16:17232744-17232844 8.85e-01 100 chr7:32720266-32720366 2.13e-01 100 chr18:68971736-68971836 3.15e-01 100 chr17:72667320-72667420 2.72e-02 100 chr4:38490497-38490597 2.14e-01 100 chrX:27076024-27076124 2.59e-04 6_[-2(3.62e-08)]_79 chr7:43331226-43331326 9.50e-04 32_[+1(4.64e-05)]_32_[-2(6.67e-05)] chr2:129931599-129931699 7.71e-01 100 chr5:71358881-71358981 1.55e-02 47_[-2(6.45e-06)]_38 chr4:171806086-171806186 7.60e-01 100 chr2:70847159-70847259 5.08e-03 23_[+2(1.36e-06)]_31_[-2(5.21e-05)]_\ 16 chr7:19119605-19119705 1.75e-02 45_[-2(2.67e-06)]_4_[+2(1.34e-05)]_\ 21 chr20:10199717-10199817 2.03e-05 15_[+3(2.53e-08)]_24_[+3(2.34e-06)]_\ 1 chr6:105335273-105335373 2.58e-05 36_[-1(1.58e-09)]_43 chr2:152085-152185 6.19e-03 43_[+2(2.24e-06)]_42 chr8:132986231-132986331 3.43e-01 100 chr6:88829451-88829551 1.91e-07 26_[+1(1.71e-08)]_25_[-2(3.67e-06)]_\ 13 chr6:146349183-146349283 1.06e-09 32_[+1(5.85e-10)]_8_[+3(2.09e-07)]_\ 9 chr12:26040001-26040101 9.21e-01 100 chr16:17877918-17878018 5.42e-06 60_[+1(1.44e-09)]_19 chr8:65292477-65292577 3.87e-01 100 chr6:24127052-24127152 3.55e-07 24_[-1(2.07e-10)]_55 chr1:16867143-16867243 4.35e-01 100 chr2:148795290-148795390 1.83e-01 100 chr10:105038599-10503869 8.10e-01 100 chr8:10847647-10847747 5.04e-02 4_[+1(2.89e-05)]_75 chr5:12330907-12331007 3.28e-03 33_[+2(6.21e-07)]_52 chr10:55357437-55357537 8.51e-02 41_[+2(5.21e-05)]_44 chr6:122773431-122773531 7.27e-01 100 chr1:155214392-155214492 2.01e-01 100 chr1:97181050-97181150 4.62e-02 36_[-2(9.09e-05)]_49 chr9:138863784-138863884 3.03e-01 100 chr13:53424464-53424564 8.20e-01 100 chr10:20276712-20276812 9.24e-01 100 chr11:113344864-11334496 1.75e-08 51_[-1(7.63e-11)]_28 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: surya.stanford.edu ********************************************************************************