Invoking: getsize memechip_out/orig.idr.seq-not-cut.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.030617 Invoking: fasta-most -min 50 < memechip_out/orig.idr.seq-not-cut.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.087753 Invoking: fasta-center -dna -len 100 < memechip_out/orig.idr.seq-not-cut.fa 1> memechip_out/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.106531 Invoking: fasta-shuffle-letters memechip_out/seqs-centered memechip_out/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.033656 Invoking: fasta-subsample memechip_out/seqs-centered 600 -rest memechip_out/seqs-discarded -seed 1 1> memechip_out/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.137634 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 memechip_out/orig.idr.seq-not-cut.fa memechip_out/background Finished invoke: name: bg status: 0 time: 0.016614 Invoking: meme memechip_out/seqs-sampled -oc memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile memechip_out/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 734.605321 Invoking: dreme -v 1 -oc memechip_out/dreme_out -png -dna -p memechip_out/seqs-centered -n memechip_out/seqs-shuffled Finished invoke: name: dreme status: 0 time: 438.911966 Invoking: centrimo -seqlen 210 -verbosity 1 -oc memechip_out/centrimo_out -bfile memechip_out/background memechip_out/orig.idr.seq-not-cut.fa memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.652135 Invoking: tomtom -verbosity 1 -text -thresh 0.1 memechip_out/combined.meme memechip_out/combined.meme 1> memechip_out/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.431244 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_1 -bgfile memechip_out/background -primary ATTTGCATAACAAWRR memechip_out/orig.idr.seq-not-cut.fa memechip_out/meme_out/meme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.458763 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_2 -bgfile memechip_out/background -primary ATGCGCAT memechip_out/orig.idr.seq-not-cut.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.204506 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_3 -bgfile memechip_out/background -primary CCTGSWG memechip_out/orig.idr.seq-not-cut.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.266125 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_4 -bgfile memechip_out/background -primary AAAGRVA memechip_out/orig.idr.seq-not-cut.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.265917 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_5 -bgfile memechip_out/background -primary CCATCTATTCTCTCTGARGSCTGCTACCT memechip_out/orig.idr.seq-not-cut.fa memechip_out/meme_out/meme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.391834 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_6 -bgfile memechip_out/background -primary CTGKGR memechip_out/orig.idr.seq-not-cut.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.240837 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_7 -bgfile memechip_out/background -primary MTGAATA memechip_out/orig.idr.seq-not-cut.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.253818 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_8 -bgfile memechip_out/background -primary CCDCCYCC memechip_out/orig.idr.seq-not-cut.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.297575 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_9 -bgfile memechip_out/background -primary AWCAAAGG memechip_out/orig.idr.seq-not-cut.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.278921 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_10 -bgfile memechip_out/background -primary TTTTTTTTTTT memechip_out/orig.idr.seq-not-cut.fa memechip_out/meme_out/meme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.348543 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_11 -bgfile memechip_out/background -primary TKTAAA memechip_out/orig.idr.seq-not-cut.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.191353 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_12 -bgfile memechip_out/background -primary GGAATGY memechip_out/orig.idr.seq-not-cut.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.223121 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_13 -bgfile memechip_out/background -primary GRGAR memechip_out/orig.idr.seq-not-cut.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.190776 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_14 -bgfile memechip_out/background -primary ACAAWGCC memechip_out/orig.idr.seq-not-cut.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.20508 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_15 -bgfile memechip_out/background -primary GTAWTTM memechip_out/orig.idr.seq-not-cut.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.221353 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_16 -bgfile memechip_out/background -primary CGAACCCR memechip_out/orig.idr.seq-not-cut.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.209206 Invoking: spamo -verbosity 1 -oc memechip_out/spamo_out_17 -bgfile memechip_out/background -primary GCCTCY memechip_out/orig.idr.seq-not-cut.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.207632 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_1 --bgfile memechip_out/background --motif ATTTGCATAACAAWRR memechip_out/meme_out/meme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo1 status: 0 time: 0.522477 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_2 --bgfile memechip_out/background --motif ATGCGCAT memechip_out/dreme_out/dreme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo2 status: 0 time: 0.38722 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_3 --bgfile memechip_out/background --motif CCTGSWG memechip_out/dreme_out/dreme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo3 status: 0 time: 0.397149 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_4 --bgfile memechip_out/background --motif AAAGRVA memechip_out/dreme_out/dreme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo4 status: 0 time: 0.377526 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_5 --bgfile memechip_out/background --motif CCATCTATTCTCTCTGARGSCTGCTACCT memechip_out/meme_out/meme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo5 status: 0 time: 0.529027 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_6 --bgfile memechip_out/background --motif CTGKGR memechip_out/dreme_out/dreme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo6 status: 0 time: 0.419292 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_7 --bgfile memechip_out/background --motif MTGAATA memechip_out/dreme_out/dreme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo7 status: 0 time: 0.504157 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_8 --bgfile memechip_out/background --motif CCDCCYCC memechip_out/dreme_out/dreme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo8 status: 0 time: 0.485752 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_9 --bgfile memechip_out/background --motif AWCAAAGG memechip_out/dreme_out/dreme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo9 status: 0 time: 0.433886 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_10 --bgfile memechip_out/background --motif TTTTTTTTTTT memechip_out/meme_out/meme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo10 status: 0 time: 0.666033 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_11 --bgfile memechip_out/background --motif TKTAAA memechip_out/dreme_out/dreme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo11 status: 0 time: 0.602489 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_12 --bgfile memechip_out/background --motif GGAATGY memechip_out/dreme_out/dreme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo12 status: 0 time: 0.364172 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_13 --bgfile memechip_out/background --motif GRGAR memechip_out/dreme_out/dreme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo13 status: 0 time: 0.423398 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_14 --bgfile memechip_out/background --motif ACAAWGCC memechip_out/dreme_out/dreme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo14 status: 0 time: 0.503 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_15 --bgfile memechip_out/background --motif GTAWTTM memechip_out/dreme_out/dreme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo15 status: 0 time: 0.366144 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_16 --bgfile memechip_out/background --motif CGAACCCR memechip_out/dreme_out/dreme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo16 status: 0 time: 0.366631 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_17 --bgfile memechip_out/background --motif GCCTCY memechip_out/dreme_out/dreme.xml memechip_out/orig.idr.seq-not-cut.fa Finished invoke: name: fimo17 status: 0 time: 0.386425 Writing output Invoking: meme-chip_html_to_tsv memechip_out/meme-chip.html memechip_out/summary.tsv Finished invoke: name: summary status: 0 time: 0.138679 Done