# DREME 4.12.0 # command: dreme -v 1 -oc memechip_out/dreme_out -png -dna -p memechip_out/seqs-centered -n memechip_out/seqs-shuffled # positives: 4586 from memechip_out/seqs-centered (Mon Oct 21 02:57:23 PDT 2019) # negatives: 4586 from memechip_out/seqs-shuffled (Mon Oct 21 02:57:23 PDT 2019) # host: surya.stanford.edu # when: Mon Oct 21 03:09:38 PDT 2019 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.267 C 0.234 G 0.232 T 0.267 MOTIF CATDABAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CATDABAA TTVTHATG 1447 163 3.8e-305 1.6e-300 # CATAACAA TTGTTATG 456 21 1.1e-112 5.0e-108 # CATGACAA TTGTCATG 379 24 1.1e-086 4.7e-082 # CATTACAA TTGTAATG 116 9 2.1e-025 9.0e-021 # CATAAGAA TTCTTATG 144 34 6.6e-018 2.9e-013 # CATAATAA TTATTATG 98 14 3.7e-017 1.6e-012 # CATGAGAA TTCTCATG 111 20 5.6e-017 2.4e-012 # CATGATAA TTATCATG 98 17 1.8e-015 7.7e-011 # CATTAGAA TTCTAATG 58 15 1.9e-007 8.0e-003 # CATTATAA TTATAATG 39 13 2.0e-004 8.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 1509 E= 1.6e-300 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.465871 0.000000 0.390325 0.143804 1.000000 0.000000 0.000000 0.000000 0.000000 0.634858 0.209410 0.155732 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATGYWAAT DREME-2 # Word RC Word Pos Neg P-value E-value # BEST ATGYWAAT ATTWRCAT 668 80 1.4e-125 5.8e-121 # ATGCAAAT ATTTGCAT 338 32 3.3e-068 1.4e-063 # ATGTAAAT ATTTACAT 157 18 1.2e-029 5.2e-025 # ATGCTAAT ATTAGCAT 123 16 3.3e-022 1.4e-017 # ATGTTAAT ATTAACAT 78 14 2.5e-012 1.1e-007 letter-probability matrix: alength= 4 w= 8 nsites= 706 E= 5.8e-121 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.667139 0.000000 0.332861 0.716714 0.000000 0.000000 0.283286 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF AWATGCR DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AWATGCR YGCATWT 659 215 1.5e-058 6.3e-054 # ATATGCA TGCATAT 304 65 9.0e-040 3.8e-035 # ATATGCG CGCATAT 83 10 6.9e-016 2.9e-011 # AAATGCA TGCATTT 261 131 9.2e-012 3.9e-007 # AAATGCG CGCATTT 55 17 3.8e-006 1.6e-001 letter-probability matrix: alength= 4 w= 7 nsites= 714 E= 6.3e-054 1.000000 0.000000 0.000000 0.000000 0.446779 0.000000 0.000000 0.553221 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.815126 0.000000 0.184874 0.000000 MOTIF ATVACAAW DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ATVACAAW WTTGTBAT 390 100 7.1e-044 3.0e-039 # ATAACAAA TTTGTTAT 97 19 3.1e-014 1.3e-009 # ATCACAAA TTTGTGAT 79 16 1.4e-011 6.0e-007 # ATAACAAT ATTGTTAT 53 8 1.3e-009 5.7e-005 # ATCACAAT ATTGTGAT 65 21 9.7e-007 4.1e-002 # ATGACAAT ATTGTCAT 48 13 3.6e-006 1.5e-001 # ATGACAAA TTTGTCAT 52 24 8.4e-004 3.6e+001 letter-probability matrix: alength= 4 w= 8 nsites= 400 E= 3.0e-039 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.382500 0.362500 0.255000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.580000 0.000000 0.000000 0.420000 MOTIF CCTGSWG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CCTGSWG CWSCAGG 767 401 5.4e-031 2.3e-026 # CCTGCTG CAGCAGG 326 137 5.0e-020 2.1e-015 # CCTGGAG CTCCAGG 212 93 1.7e-012 7.4e-008 # CCTGCAG CTGCAGG 168 116 1.0e-003 4.4e+001 # CCTGGTG CACCAGG 113 74 2.4e-003 1.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 847 E= 2.3e-026 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.605667 0.394333 0.000000 0.463991 0.000000 0.000000 0.536009 0.000000 0.000000 1.000000 0.000000 MOTIF AAAGRVA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AAAGRVA TBYCTTT 1126 723 4.5e-026 1.9e-021 # AAAGAAA TTTCTTT 311 171 2.9e-011 1.2e-006 # AAAGGCA TGCCTTT 196 109 2.3e-007 9.9e-003 # AAAGACA TGTCTTT 164 93 4.2e-006 1.8e-001 # AAAGGAA TTCCTTT 218 140 1.5e-005 6.6e-001 # AAAGGGA TCCCTTT 195 124 3.1e-005 1.3e+000 # AAAGAGA TCTCTTT 203 138 2.0e-004 8.5e+000 letter-probability matrix: alength= 4 w= 7 nsites= 1299 E= 1.9e-021 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.525019 0.000000 0.474981 0.000000 0.409546 0.281755 0.308699 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTGKGR DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CTGKGR YCMCAG 1612 1168 3.4e-024 1.4e-019 # CTGTGG CCACAG 437 285 2.1e-009 9.0e-005 # CTGGGA TCCCAG 496 345 2.7e-008 1.1e-003 # CTGTGA TCACAG 388 257 5.0e-008 2.1e-003 # CTGGGG CCCCAG 543 410 3.0e-006 1.3e-001 letter-probability matrix: alength= 4 w= 6 nsites= 1967 E= 1.4e-019 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.560752 0.439248 0.000000 0.000000 1.000000 0.000000 0.470259 0.000000 0.529741 0.000000 MOTIF CCDCCYCC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CCDCCYCC GGRGGHGG 282 114 1.5e-018 6.5e-014 # CCTCCCCC GGGGGAGG 102 31 1.9e-010 7.8e-006 # CCTCCTCC GGAGGAGG 65 26 2.4e-005 1.0e+000 # CCACCCCC GGGGGTGG 55 23 1.8e-004 7.5e+000 # CCACCTCC GGAGGTGG 40 15 4.9e-004 2.1e+001 # CCGCCTCC GGAGGCGG 21 6 2.9e-003 1.2e+002 # CCGCCCCC GGGGGCGG 34 16 7.5e-003 3.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 306 E= 6.5e-014 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.300654 0.000000 0.169935 0.529412 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.620915 0.000000 0.379085 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATGCGCAT DREME-9 # Word RC Word Pos Neg P-value E-value # BEST ATGCGCAT ATGCGCAT 48 2 1.0e-012 4.2e-008 # ATGCGCAT ATGCGCAT 48 2 1.0e-012 4.2e-008 letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 4.2e-008 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF TKTAAA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST TKTAAA TTTAMA 556 355 1.2e-012 5.1e-008 # TGTAAA TTTACA 331 202 4.8e-009 2.0e-004 # TTTAAA TTTAAA 248 166 2.2e-005 9.2e-001 letter-probability matrix: alength= 4 w= 6 nsites= 605 E= 5.1e-008 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.571901 0.428099 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF MTGAATA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST MTGAATA TATTCAK 223 106 2.4e-011 9.8e-007 # ATGAATA TATTCAT 138 53 2.1e-010 8.9e-006 # CTGAATA TATTCAG 92 53 6.9e-004 2.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 232 E= 9.8e-007 0.607759 0.392241 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GRGAR DREME-12 # Word RC Word Pos Neg P-value E-value # BEST GRGAR YTCYC 2879 2579 9.9e-011 4.1e-006 # GAGAG CTCTC 1083 914 1.1e-005 4.4e-001 # GGGAG CTCCC 1073 910 2.0e-005 8.2e-001 # GAGAA TTCTC 1115 968 1.4e-004 5.7e+000 # GGGAA TTCCC 1015 894 1.0e-003 4.2e+001 letter-probability matrix: alength= 4 w= 5 nsites= 4578 E= 4.1e-006 0.000000 0.000000 1.000000 0.000000 0.506553 0.000000 0.493447 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.504150 0.000000 0.495850 0.000000 MOTIF GGAATGY DREME-13 # Word RC Word Pos Neg P-value E-value # BEST GGAATGY RCATTCC 184 79 2.2e-011 8.7e-007 # GGAATGT ACATTCC 90 32 6.0e-008 2.4e-003 # GGAATGC GCATTCC 95 48 4.6e-005 1.9e+000 letter-probability matrix: alength= 4 w= 7 nsites= 192 E= 8.7e-007 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.515625 0.000000 0.484375 MOTIF GTAWTTM DREME-14 # Word RC Word Pos Neg P-value E-value # BEST GTAWTTM KAAWTAC 201 95 1.8e-010 7.3e-006 # GTAATTA TAATTAC 57 25 2.5e-004 1.0e+001 # GTAATTC GAATTAC 52 23 5.2e-004 2.1e+001 # GTATTTC GAAATAC 44 23 6.8e-003 2.7e+002 # GTATTTA TAAATAC 51 29 8.9e-003 3.6e+002 letter-probability matrix: alength= 4 w= 7 nsites= 207 E= 7.3e-006 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.536232 0.000000 0.000000 0.463768 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.521739 0.478261 0.000000 0.000000 MOTIF CGAACCCR DREME-15 # Word RC Word Pos Neg P-value E-value # BEST CGAACCCR YGGGTTCG 35 2 4.8e-009 1.9e-004 # CGAACCCG CGGGTTCG 16 0 1.5e-005 6.0e-001 # CGAACCCA TGGGTTCG 19 2 1.1e-004 4.4e+000 letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.9e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.542857 0.000000 0.457143 0.000000 MOTIF AWCAAAGG DREME-16 # Word RC Word Pos Neg P-value E-value # BEST AWCAAAGG CCTTTGWT 93 32 1.8e-008 7.1e-004 # ATCAAAGG CCTTTGAT 48 13 3.6e-006 1.4e-001 # AACAAAGG CCTTTGTT 45 19 7.5e-004 3.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 93 E= 7.1e-004 1.000000 0.000000 0.000000 0.000000 0.483871 0.000000 0.000000 0.516129 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ATCTRCAT DREME-17 # Word RC Word Pos Neg P-value E-value # BEST ATCTRCAT ATGYAGAT 87 31 1.0e-007 4.2e-003 # ATCTGCAT ATGCAGAT 59 24 7.2e-005 2.9e+000 # ATCTACAT ATGTAGAT 29 7 1.5e-004 6.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 4.2e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.322222 0.000000 0.677778 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF ACAAWGCC DREME-18 # Word RC Word Pos Neg P-value E-value # BEST ACAAWGCC GGCWTTGT 72 25 8.5e-007 3.4e-002 # ACAAAGCC GGCTTTGT 50 17 3.2e-005 1.3e+000 # ACAATGCC GGCATTGT 22 8 8.0e-003 3.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 3.4e-002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.694444 0.000000 0.000000 0.305556 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCCTCY DREME-19 # Word RC Word Pos Neg P-value E-value # BEST GCCTCY RGAGGC 515 380 1.2e-006 4.6e-002 # GCCTCC GGAGGC 237 174 8.6e-004 3.4e+001 # GCCTCT AGAGGC 284 218 1.4e-003 5.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 533 E= 4.6e-002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.459662 0.000000 0.540338 # Stopping reason: E-value threshold exceeded # Running time: 438.52 seconds