Invoking:
  getsize memechip_out/orig.idr.intersection.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.029162
Invoking:
  fasta-most -min 50 < memechip_out/orig.idr.intersection.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.072039
Invoking:
  fasta-center -dna -len 100 < memechip_out/orig.idr.intersection.fa 1> memechip_out/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.086473
Invoking:
  fasta-shuffle-letters memechip_out/seqs-centered memechip_out/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.040308
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 memechip_out/orig.idr.intersection.fa memechip_out/background
Finished invoke:
  name: bg  status: 0  time: 0.026726
Invoking:
  meme memechip_out/seqs-centered -oc memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile memechip_out/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 148.339094
Invoking:
  dreme -v 1 -oc memechip_out/dreme_out -png -dna -p memechip_out/seqs-centered -n memechip_out/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 12.62533
Invoking:
  centrimo -seqlen 210 -verbosity 1 -oc memechip_out/centrimo_out -bfile memechip_out/background memechip_out/orig.idr.intersection.fa memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.291169
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 memechip_out/combined.meme memechip_out/combined.meme 1> memechip_out/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.38035
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_1 -bgfile memechip_out/background -primary CYTTTRWTATGCAAA memechip_out/orig.idr.intersection.fa memechip_out/meme_out/meme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.263616
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_2 -bgfile memechip_out/background -primary AGTCACCTCATTAGCATAAACTCAGGTGTG memechip_out/orig.idr.intersection.fa memechip_out/meme_out/meme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.166934
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_3 -bgfile memechip_out/background -primary AAACCCTTGGAATTTCCTGAGTGATAGGA memechip_out/orig.idr.intersection.fa memechip_out/meme_out/meme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.230929
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_4 -bgfile memechip_out/background -primary CACSTG memechip_out/orig.idr.intersection.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.095136
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_1 --bgfile memechip_out/background --motif CYTTTRWTATGCAAA memechip_out/meme_out/meme.xml memechip_out/orig.idr.intersection.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.201694
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_2 --bgfile memechip_out/background --motif AGTCACCTCATTAGCATAAACTCAGGTGTG memechip_out/meme_out/meme.xml memechip_out/orig.idr.intersection.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.111808
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_3 --bgfile memechip_out/background --motif AAACCCTTGGAATTTCCTGAGTGATAGGA memechip_out/meme_out/meme.xml memechip_out/orig.idr.intersection.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.127117
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_4 --bgfile memechip_out/background --motif CACSTG memechip_out/dreme_out/dreme.xml memechip_out/orig.idr.intersection.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.045481
Writing output
Invoking:
  meme-chip_html_to_tsv memechip_out/meme-chip.html memechip_out/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.23978
Done