# DREME 4.12.0 # command: dreme -v 1 -oc memechip_out/dreme_out -png -dna -p memechip_out/seqs-centered -n memechip_out/seqs-shuffled # positives: 257 from memechip_out/seqs-centered (Mon Oct 21 02:45:04 PDT 2019) # negatives: 257 from memechip_out/seqs-shuffled (Mon Oct 21 02:45:04 PDT 2019) # host: surya.stanford.edu # when: Mon Oct 21 02:47:33 PDT 2019 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.281 C 0.213 G 0.219 T 0.286 MOTIF TATGYWAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TATGYWAA TTWRCATA 128 2 5.4e-045 1.2e-040 # TATGCAAA TTTGCATA 74 1 4.9e-024 1.1e-019 # TATGCTAA TTAGCATA 35 1 1.7e-010 3.7e-006 # TATGTAAA TTTACATA 21 0 3.1e-007 6.8e-003 # TATGTTAA TTAACATA 7 0 7.5e-003 1.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 146 E= 1.2e-040 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.794521 0.000000 0.205479 0.705479 0.000000 0.000000 0.294521 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATRACAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST ATRACAA TTGTYAT 56 5 1.7e-013 3.6e-009 # ATAACAA TTGTTAT 41 2 2.2e-011 4.8e-007 # ATGACAA TTGTCAT 16 3 1.9e-003 4.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 58 E= 3.6e-009 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.706897 0.000000 0.293103 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TATGCR DREME-3 # Word RC Word Pos Neg P-value E-value # BEST TATGCR YGCATA 52 13 1.1e-007 2.3e-003 # TATGCA TGCATA 36 12 1.9e-004 4.1e+000 # TATGCG CGCATA 16 2 5.4e-004 1.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 54 E= 2.3e-003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.703704 0.000000 0.296296 0.000000 MOTIF CTCATKA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CTCATKA TMATGAG 22 1 1.9e-006 3.9e-002 # CTCATGA TCATGAG 10 0 8.9e-004 1.9e+001 # CTCATTA TAATGAG 12 1 1.5e-003 3.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 22 E= 3.9e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.454545 0.545455 1.000000 0.000000 0.000000 0.000000 MOTIF MAGGAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST MAGGAA TTCCTK 71 29 1.9e-006 4.0e-002 # CAGGAA TTCCTG 37 13 2.5e-004 5.3e+000 # AAGGAA TTCCTT 39 17 1.3e-003 2.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 77 E= 4.0e-002 0.506494 0.493506 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CACSTG DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CACSTG CASGTG 43 11 2.3e-006 4.8e-002 # CACCTG CAGGTG 37 11 5.4e-005 1.1e+000 # CACGTG CACGTG 8 0 3.7e-003 7.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 47 E= 4.8e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.829787 0.170213 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 12.25 seconds