# DREME 4.12.0 # command: dreme -v 1 -oc memechip_out/dreme_out -png -dna -p memechip_out/seqs-centered -n memechip_out/seqs-shuffled # positives: 484 from memechip_out/seqs-centered (Mon Oct 21 02:48:32 PDT 2019) # negatives: 484 from memechip_out/seqs-shuffled (Mon Oct 21 02:48:32 PDT 2019) # host: surya.stanford.edu # when: Mon Oct 21 02:54:10 PDT 2019 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.246 C 0.254 G 0.254 T 0.246 MOTIF GGTBCTGA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GGTBCTGA TCAGVACC 171 7 1.1e-049 3.0e-045 # GGTGCTGA TCAGCACC 123 3 7.9e-037 2.2e-032 # GGTCCTGA TCAGGACC 37 2 7.5e-010 2.1e-005 # GGTTCTGA TCAGAACC 16 2 6.0e-004 1.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 192 E= 3.0e-045 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.192708 0.723958 0.083333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGACAGCD DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GGACAGCD HGCTGTCC 149 5 9.2e-044 2.5e-039 # GGACAGCG CGCTGTCC 58 0 5.6e-019 1.6e-014 # GGACAGCT AGCTGTCC 58 2 2.9e-016 8.0e-012 # GGACAGCA TGCTGTCC 41 3 3.8e-010 1.0e-005 letter-probability matrix: alength= 4 w= 8 nsites= 164 E= 2.5e-039 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.256098 0.000000 0.371951 0.371951 MOTIF ATGYWAAT DREME-3 # Word RC Word Pos Neg P-value E-value # BEST ATGYWAAT ATTWRCAT 117 6 3.0e-031 8.2e-027 # ATGCAAAT ATTTGCAT 55 3 2.6e-014 7.1e-010 # ATGCTAAT ATTAGCAT 29 1 1.9e-008 5.3e-004 # ATGTTAAT ATTAACAT 28 1 3.8e-008 1.0e-003 # ATGTAAAT ATTTACAT 22 1 2.3e-006 6.2e-002 letter-probability matrix: alength= 4 w= 8 nsites= 149 E= 8.2e-027 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.644295 0.000000 0.355705 0.570470 0.000000 0.000000 0.429530 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF GMCAGKA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GMCAGKA TMCTGKC 62 14 3.2e-009 8.7e-005 # GCCAGGA TCCTGGC 29 9 6.7e-004 1.8e+001 # GACAGGA TCCTGTC 15 2 1.1e-003 2.9e+001 # GACAGTA TACTGTC 16 3 2.0e-003 5.4e+001 # GCCAGTA TACTGGC 7 0 7.6e-003 2.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 69 E= 8.7e-005 0.000000 0.000000 1.000000 0.000000 0.463768 0.536232 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 1.000000 0.000000 0.000000 0.000000 MOTIF CAGTWCC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CAGTWCC GGWACTG 37 4 2.9e-008 7.7e-004 # CAGTTCC GGAACTG 23 1 1.2e-006 3.1e-002 # CAGTACC GGTACTG 15 3 3.5e-003 9.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 38 E= 7.7e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.394737 0.000000 0.000000 0.605263 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 17.00 seconds