******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= chipseq_overlap/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:85709531-85709631 1.0000 100 chr20:47899778-47899878 1.0000 100 chr6:8812567-8812667 1.0000 100 chr16:68205894-68205994 1.0000 100 chr2:79923809-79923909 1.0000 100 chr10:10403516-10403616 1.0000 100 chr12:6873637-6873737 1.0000 100 chrX:17620057-17620157 1.0000 100 chr5:45655231-45655331 1.0000 100 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1.0000 100 chrX:15779794-15779894 1.0000 100 chr5:70942953-70943053 1.0000 100 chr19:58708414-58708514 1.0000 100 chr11:58421634-58421734 1.0000 100 chr10:48539221-48539321 1.0000 100 chr13:31191611-31191711 1.0000 100 chr2:148243177-148243277 1.0000 100 chr7:139909294-139909394 1.0000 100 chr12:19590987-19591087 1.0000 100 chr12:3193908-3194008 1.0000 100 chr17:12318414-12318514 1.0000 100 chr5:82663713-82663813 1.0000 100 chr18:49640879-49640979 1.0000 100 chr1:75089592-75089692 1.0000 100 chr11:125952389-12595248 1.0000 100 chr9:103860682-103860782 1.0000 100 chr12:58281695-58281795 1.0000 100 chr8:50848769-50848869 1.0000 100 chr3:190271163-190271263 1.0000 100 chr16:72906687-72906787 1.0000 100 chr11:85252815-85252915 1.0000 100 chr2:178076883-178076983 1.0000 100 chr9:37662019-37662119 1.0000 100 chr20:40749288-40749388 1.0000 100 chr12:101717569-10171766 1.0000 100 chr22:24879083-24879183 1.0000 100 chr7:68573241-68573341 1.0000 100 chr4:112571363-112571463 1.0000 100 chr1:160324303-160324403 1.0000 100 chr15:41576148-41576248 1.0000 100 chr7:33951194-33951294 1.0000 100 chr6:14316693-14316793 1.0000 100 chr3:187336615-187336715 1.0000 100 chr11:97495603-97495703 1.0000 100 chr3:194992194-194992294 1.0000 100 chr7:115994470-115994570 1.0000 100 chr7:37301451-37301551 1.0000 100 chr8:142973256-142973356 1.0000 100 chr7:86273474-86273574 1.0000 100 chr15:39464317-39464417 1.0000 100 chr3:34050359-34050459 1.0000 100 chr14:31042166-31042266 1.0000 100 chr18:9443007-9443107 1.0000 100 chr10:9920132-9920232 1.0000 100 chr14:23217454-23217554 1.0000 100 chr6:139171043-139171143 1.0000 100 chr5:44996045-44996145 1.0000 100 chr3:10595871-10595971 1.0000 100 chr22:36725426-36725526 1.0000 100 chr17:53038521-53038621 1.0000 100 chr10:11061471-11061571 1.0000 100 chr6:26327835-26327935 1.0000 100 chr20:39675145-39675245 1.0000 100 chr6:51142324-51142424 1.0000 100 chr13:95254646-95254746 1.0000 100 chr5:61818754-61818854 1.0000 100 chr5:67184339-67184439 1.0000 100 chr1:55266001-55266101 1.0000 100 chr9:104182074-104182174 1.0000 100 chr11:64493727-64493827 1.0000 100 chr5:158845850-158845950 1.0000 100 chr2:113299885-113299985 1.0000 100 chr5:125475657-125475757 1.0000 100 chr2:10379917-10380017 1.0000 100 chr13:31533897-31533997 1.0000 100 chr5:127823826-127823926 1.0000 100 chr1:113804438-113804538 1.0000 100 chr21:15486650-15486750 1.0000 100 chr5:79785247-79785347 1.0000 100 chr11:112182158-11218225 1.0000 100 chr11:133326949-13332704 1.0000 100 chr14:68066960-68067060 1.0000 100 chr18:66614298-66614398 1.0000 100 chr18:25229539-25229639 1.0000 100 chr11:111207356-11120745 1.0000 100 chr2:209114872-209114972 1.0000 100 chr12:20565640-20565740 1.0000 100 chr5:105371335-105371435 1.0000 100 chr19:41488744-41488844 1.0000 100 chr7:158940532-158940632 1.0000 100 chr5:53620770-53620870 1.0000 100 chr2:145770590-145770690 1.0000 100 chr13:78178036-78178136 1.0000 100 chr5:34475632-34475732 1.0000 100 chr21:43902855-43902955 1.0000 100 chr2:189976265-189976365 1.0000 100 chr6:109095917-109096017 1.0000 100 chr5:125313661-125313761 1.0000 100 chr12:80864335-80864435 1.0000 100 chr11:128588035-12858813 1.0000 100 chr2:150672070-150672170 1.0000 100 chr1:79697140-79697240 1.0000 100 chr4:83746100-83746200 1.0000 100 chr7:43286196-43286296 1.0000 100 chr5:156878703-156878803 1.0000 100 chr9:110637121-110637221 1.0000 100 chr12:68511276-68511376 1.0000 100 chrX:39681584-39681684 1.0000 100 chr12:95730198-95730298 1.0000 100 chr22:37959345-37959445 1.0000 100 chr8:28748065-28748165 1.0000 100 chr5:150226691-150226791 1.0000 100 chr10:22035151-22035251 1.0000 100 chr20:29637822-29637922 1.0000 100 chr9:23283795-23283895 1.0000 100 chr14:23341761-23341861 1.0000 100 chr14:59439053-59439153 1.0000 100 chr2:182737661-182737761 1.0000 100 chr2:122965560-122965660 1.0000 100 chr4:98042727-98042827 1.0000 100 chr1:76782164-76782264 1.0000 100 chr10:14317082-14317182 1.0000 100 chr2:232545521-232545621 1.0000 100 chr17:40048514-40048614 1.0000 100 chr14:25148176-25148276 1.0000 100 chr14:65183902-65184002 1.0000 100 chr12:107162153-10716225 1.0000 100 chr17:42640079-42640179 1.0000 100 chr11:11345583-11345683 1.0000 100 chr14:65833953-65834053 1.0000 100 chr6:130366349-130366449 1.0000 100 chr3:129033948-129034048 1.0000 100 chr13:23075458-23075558 1.0000 100 chr10:14395027-14395127 1.0000 100 chr12:4629546-4629646 1.0000 100 chr5:57246558-57246658 1.0000 100 chr5:40170745-40170845 1.0000 100 chr2:200852786-200852886 1.0000 100 chr20:37354654-37354754 1.0000 100 chr6:68175515-68175615 1.0000 100 chr17:53119288-53119388 1.0000 100 chr6:75386337-75386437 1.0000 100 chr18:9616011-9616111 1.0000 100 chr12:63365646-63365746 1.0000 100 chr12:2228905-2229005 1.0000 100 chr1:245607830-245607930 1.0000 100 chr3:9005371-9005471 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme chipseq_overlap/seqs-sampled -oc chipseq_overlap/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile chipseq_overlap/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.271 C 0.229 G 0.229 T 0.271 Background letter frequencies (from chipseq_overlap/background): A 0.277 C 0.223 G 0.223 T 0.277 ******************************************************************************** ******************************************************************************** MOTIF WTTTGCATAWSAAW MEME-1 width = 14 sites = 72 llr = 778 E-value = 3.7e-045 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTTTGCATAWSAAW MEME-1 Description -------------------------------------------------------------------------------- Simplified A 61:23:a:6719a5 pos.-specific C ::3:1a:11:4::: probability G 1:1:6:::2:3::: matrix T 3978:::91321:5 bits 2.2 * 1.9 ** 1.7 ** * 1.5 ** ** Relative 1.3 * *** ** Entropy 1.1 * * *** ** (15.6 bits) 0.9 ******* * ** 0.6 ******** * *** 0.4 ********** *** 0.2 ************** 0.0 -------------- Multilevel ATTTGCATAACAAA consensus T C A GTG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTGCATAWSAAW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chr11:132852739-13285283 + 75 1.63e-08 GCTGTGGCTT ATTTGCATAACAAT TACATGCCTT chr3:190271163-190271263 - 42 3.27e-08 GGAGGAACGC ATTTGCATAAGAAT AAGAGGTTCT chr21:36535221-36535321 + 31 4.74e-08 CTCATTTACC TTTTGCATAACAAA AGCCCAGACT chr11:20150459-20150559 + 33 7.03e-08 ggagcatgtg atctgcataacaat cgcgtgaggt chr2:209262491-209262591 + 63 7.03e-08 aatggcctgc atttgcatatcaaa gcttgcctgc chr5:136053751-136053851 + 35 1.06e-07 AGAGCCTGAA ATCTGCATAAGAAA GGGTGGTGGC chr3:50828434-50828534 - 26 2.08e-07 ACTTAGGAGC TTCTGCATAACAAA AGAAACTATC chr22:46774163-46774263 - 36 3.28e-07 GAGTCTGAGG ATTTCCATAACAAA GCCCCATTAT chr14:59439053-59439153 - 18 4.17e-07 TAGAGAACCC ATCTGCATAATAAA AGATTAAGGT chr3:56511040-56511140 - 27 4.17e-07 CTGGCCTCTC ATTTCCATAACAAT CACCACTCCT chr20:30173549-30173649 + 49 4.17e-07 tggaggtttc atctgcataataaa accttggtcg chr2:203114726-203114826 - 17 5.08e-07 GGTGCCCTGC ATTTGCATATTAAA AGGCTATGCT chr4:113906353-113906453 + 41 5.08e-07 CAGGTAAAAG ATTTGCATTACAAT TAAGTTACCA chr11:125952389-12595248 + 60 6.99e-07 AGAGGGCTCT ATTTGCATGATAAT GCCCTCCTTG chr1:88752375-88752475 - 81 6.99e-07 TTCCAC ATCTGCATAAAAAT AGAAGCTCAT chr12:116780784-11678088 - 28 6.99e-07 AGGCACTGAA ATTTACATGACAAT GGACAGGGAT chr7:68573241-68573341 - 36 1.01e-06 AAGAATTGCA ATTTACATGAGAAT GACAAGGCGA chr10:12524599-12524699 - 60 1.01e-06 ATGCAATTAC ATGTGCATAACAAA AGACAGTCAC chr6:161584647-161584747 + 26 1.16e-06 CTTTGTGAGA ATGTGCATAACAAT GGCACTGGCT chr2:137576498-137576598 - 45 1.32e-06 GCTCAGTTCG TTTTACATGACAAA TATGGAGAAT chr5:53620770-53620870 + 11 1.54e-06 TGACGCATAA ATTTGCATCAGAAT CATAGCATCA chr20:56574350-56574450 + 74 1.54e-06 AAATACCACA TTCTGCATAAAAAT ATCCTTCAAA chr8:98795837-98795937 + 44 1.54e-06 gtggggtctc atttgcataacaag accaccttcc chr11:37619453-37619553 + 67 1.54e-06 gaattgggtc attagcatatgaaa gactcttatc chr5:164107298-164107398 - 62 1.76e-06 TGAGTGCTTC ATCTACATAATAAA AACCTTGGTG chr2:6054206-6054306 + 47 1.76e-06 TTGGTGCTTA TTTTGCATATAAAT GGCTGGGCTA chr2:237756224-237756324 + 24 1.76e-06 gaattggttg atttgcatttgaaa ggaatgctct chr11:85252815-85252915 - 53 1.96e-06 AAATAATTCC ATTTGCATTTGAAT TAAATTCCTT chr3:177877535-177877635 + 22 1.96e-06 gtctcttgtg ttctccataacaaa ggccagctct chr1:72500526-72500626 - 1 2.42e-06 AGCTGCTGGC ATTTACATATAAAA chr2:135290255-135290355 + 25 2.42e-06 TGCTGGCTTC ATGTGCATATCAAA TAGGTGAGCT chrX:91526037-91526137 - 2 2.42e-06 ATTGACTTAA ATCTGCACAACAAA C chr4:12148054-12148154 - 30 2.42e-06 TCAGTGGAAA ATTAACATAAGAAT GACATCCACT chr7:157587460-157587560 - 50 2.62e-06 GGTGATGTGC TTTAGCATGACAAT GAGTGCAGGC chr2:5135718-5135818 + 49 2.62e-06 gtacagagta ttctacatgacaaa ggccaactac chr11:113770349-11377044 + 37 2.96e-06 TCCTTATTAT GTTTGCATAATAAA CCCTCTCCCC chr2:105501946-105502046 - 10 3.37e-06 GGGAGTGCCT TTTAGCATATGAAT GCATTATAA chr14:68507445-68507545 - 83 4.21e-06 TTTA ATGTGCATGAGAAT CACCTGGAGG chr18:66614298-66614398 - 6 4.63e-06 AAATTCTTTA TTCTACATAAAAAT GTCAC chr9:114013859-114013959 - 19 4.63e-06 TCCATTTCCT TTTTGCATCTCAAT GGCCACAGCA chr3:136979882-136979982 + 32 5.00e-06 ataatcatac aattgcatgacaat aaaaagtatg chr12:117673200-11767330 - 63 5.45e-06 TCTTTTTTCC TTTACCATAACAAT ACGAGGAACC chr2:222776149-222776249 + 9 5.45e-06 caatagct tcttgcataacaaa gtatagtttc chr11:128741063-12874116 - 15 6.00e-06 TAACTCCCTG GTCTGCATAATAAT GAGACATTCT chr10:11061471-11061571 - 69 6.60e-06 TCAAAAGACA ATTTGCATAACAGA TTCTATCATC chr7:137928327-137928427 + 47 6.60e-06 GACTGCCTTG GTTTGCATGATAAA GGAAGGTCAC chr14:65833953-65834053 + 47 7.29e-06 GTGGGATGAG ATCTCCATTAGAAA GGGACCACTG chr4:123710266-123710366 + 28 7.29e-06 aatgacgtaa atttccataacaag tcttaccttt chr8:89895844-89895944 + 47 7.29e-06 ttttcctggg aattacataagaaa ggaattacta chr7:41872500-41872600 + 34 7.29e-06 GTGATCCCAC ATTTACACATCAAA GGCTTTTTCC chr4:140796604-140796704 - 66 8.07e-06 CTGACCCCCT ATTAACATGTCAAT GAGAGTGGCT chr3:122745463-122745563 + 79 8.07e-06 ACAAAGACAA ATTACCATGAGAAA CATAAATC chr2:191277770-191277870 - 72 8.81e-06 GCTCAGCTAG ATTTACATCATAAT GGATCAAGGC chr18:35221213-35221313 + 36 1.04e-05 CCTTGTGGGT TTTTGCATAAATAT GGGCTGTATT chr13:30970525-30970625 - 35 1.11e-05 ATCTGCATAT ATTTGCATATATAT ATGCACGCAT chr12:3193908-3194008 - 46 1.21e-05 ACAGCCGCAG GTCTGCATTAGAAA AGGCAGGCGC chr3:100632143-100632243 + 36 1.32e-05 accctgaagt aattacatatgaaa aggccagaac chr2:27777756-27777856 + 43 1.44e-05 gggtaaggat ttcaacatatgaat tttggggggg chr2:208630480-208630580 + 72 1.57e-05 AAAAAGGCTG TTTAACATGATAAA gggggagggg chr5:130990602-130990702 - 15 1.70e-05 CCAAAATTAT ATTTCCATAATTAA GTGATGAATA chrX:17620057-17620157 + 14 1.82e-05 CAAACTTGGC TTTAACATATAAAT GTGAGGTGTC chr7:89927498-89927598 - 58 2.10e-05 CATCTGCTCA TTCTGCAAAACAAT GGTCCATGAG chr12:13241437-13241537 + 33 2.26e-05 GTTTTTGCAT TCCTGCATATGAAT GAAAGTCAGC chr19:21581424-21581524 - 36 2.26e-05 GGAAGGCAAT TTTAACATTTCAAA GGGTTACCCG chr9:81975925-81976025 + 17 2.64e-05 CATTTTATGT ATTTGCACTTTAAA GGTGAGCAGG chr2:52539088-52539188 - 77 2.64e-05 TGTGGGAGAG ATTTGCATCTGTAA AGAATCTGCA chr6:26327835-26327935 - 58 2.84e-05 TCGAAAGCCT TTTTACACGTGAAA TATCGATCGG chr17:2237951-2238051 - 85 2.84e-05 CT TTCCGCATGACAAA CTCCTCTTGT chr7:30120634-30120734 + 14 3.04e-05 AGCATGGCCA TTTTGCATTTGTAT AGGTAGTGAC chr15:92657141-92657241 + 57 3.67e-05 GTGAACTCCC AATTGCACATGAAT GCCAGAAGCA chr16:53660325-53660425 + 17 4.21e-05 CATCCTCAGT ATCACCATGTAAAA AGAACATTTA chr7:158940532-158940632 + 56 6.07e-05 catgaccaac attaacataaaaac agagctccta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTGCATAWSAAW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:132852739-13285283 1.6e-08 74_[+1]_12 chr3:190271163-190271263 3.3e-08 41_[-1]_45 chr21:36535221-36535321 4.7e-08 30_[+1]_56 chr11:20150459-20150559 7e-08 32_[+1]_54 chr2:209262491-209262591 7e-08 62_[+1]_24 chr5:136053751-136053851 1.1e-07 34_[+1]_52 chr3:50828434-50828534 2.1e-07 25_[-1]_61 chr22:46774163-46774263 3.3e-07 35_[-1]_51 chr14:59439053-59439153 4.2e-07 17_[-1]_69 chr3:56511040-56511140 4.2e-07 26_[-1]_60 chr20:30173549-30173649 4.2e-07 48_[+1]_38 chr2:203114726-203114826 5.1e-07 16_[-1]_70 chr4:113906353-113906453 5.1e-07 40_[+1]_46 chr11:125952389-12595248 7e-07 59_[+1]_27 chr1:88752375-88752475 7e-07 80_[-1]_6 chr12:116780784-11678088 7e-07 27_[-1]_59 chr7:68573241-68573341 1e-06 35_[-1]_51 chr10:12524599-12524699 1e-06 59_[-1]_27 chr6:161584647-161584747 1.2e-06 25_[+1]_61 chr2:137576498-137576598 1.3e-06 44_[-1]_42 chr5:53620770-53620870 1.5e-06 10_[+1]_76 chr20:56574350-56574450 1.5e-06 73_[+1]_13 chr8:98795837-98795937 1.5e-06 43_[+1]_43 chr11:37619453-37619553 1.5e-06 66_[+1]_20 chr5:164107298-164107398 1.8e-06 61_[-1]_25 chr2:6054206-6054306 1.8e-06 46_[+1]_40 chr2:237756224-237756324 1.8e-06 23_[+1]_63 chr11:85252815-85252915 2e-06 52_[-1]_34 chr3:177877535-177877635 2e-06 21_[+1]_65 chr1:72500526-72500626 2.4e-06 [-1]_86 chr2:135290255-135290355 2.4e-06 24_[+1]_62 chrX:91526037-91526137 2.4e-06 1_[-1]_85 chr4:12148054-12148154 2.4e-06 29_[-1]_57 chr7:157587460-157587560 2.6e-06 49_[-1]_37 chr2:5135718-5135818 2.6e-06 48_[+1]_38 chr11:113770349-11377044 3e-06 36_[+1]_50 chr2:105501946-105502046 3.4e-06 9_[-1]_77 chr14:68507445-68507545 4.2e-06 82_[-1]_4 chr18:66614298-66614398 4.6e-06 5_[-1]_81 chr9:114013859-114013959 4.6e-06 18_[-1]_68 chr3:136979882-136979982 5e-06 31_[+1]_55 chr12:117673200-11767330 5.4e-06 62_[-1]_24 chr2:222776149-222776249 5.4e-06 8_[+1]_78 chr11:128741063-12874116 6e-06 14_[-1]_72 chr10:11061471-11061571 6.6e-06 68_[-1]_18 chr7:137928327-137928427 6.6e-06 46_[+1]_40 chr14:65833953-65834053 7.3e-06 46_[+1]_40 chr4:123710266-123710366 7.3e-06 27_[+1]_59 chr8:89895844-89895944 7.3e-06 46_[+1]_40 chr7:41872500-41872600 7.3e-06 33_[+1]_53 chr4:140796604-140796704 8.1e-06 65_[-1]_21 chr3:122745463-122745563 8.1e-06 78_[+1]_8 chr2:191277770-191277870 8.8e-06 71_[-1]_15 chr18:35221213-35221313 1e-05 35_[+1]_51 chr13:30970525-30970625 1.1e-05 34_[-1]_52 chr12:3193908-3194008 1.2e-05 45_[-1]_41 chr3:100632143-100632243 1.3e-05 35_[+1]_51 chr2:27777756-27777856 1.4e-05 42_[+1]_44 chr2:208630480-208630580 1.6e-05 71_[+1]_15 chr5:130990602-130990702 1.7e-05 14_[-1]_72 chrX:17620057-17620157 1.8e-05 13_[+1]_73 chr7:89927498-89927598 2.1e-05 57_[-1]_29 chr12:13241437-13241537 2.3e-05 32_[+1]_54 chr19:21581424-21581524 2.3e-05 35_[-1]_51 chr9:81975925-81976025 2.6e-05 16_[+1]_70 chr2:52539088-52539188 2.6e-05 76_[-1]_10 chr6:26327835-26327935 2.8e-05 57_[-1]_29 chr17:2237951-2238051 2.8e-05 84_[-1]_2 chr7:30120634-30120734 3e-05 13_[+1]_73 chr15:92657141-92657241 3.7e-05 56_[+1]_30 chr16:53660325-53660425 4.2e-05 16_[+1]_70 chr7:158940532-158940632 6.1e-05 55_[+1]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTGCATAWSAAW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTTTGCATAWSAAW width=14 seqs=72 chr11:132852739-13285283 ( 75) ATTTGCATAACAAT 1 chr3:190271163-190271263 ( 42) ATTTGCATAAGAAT 1 chr21:36535221-36535321 ( 31) TTTTGCATAACAAA 1 chr11:20150459-20150559 ( 33) ATCTGCATAACAAT 1 chr2:209262491-209262591 ( 63) ATTTGCATATCAAA 1 chr5:136053751-136053851 ( 35) ATCTGCATAAGAAA 1 chr3:50828434-50828534 ( 26) TTCTGCATAACAAA 1 chr22:46774163-46774263 ( 36) ATTTCCATAACAAA 1 chr14:59439053-59439153 ( 18) ATCTGCATAATAAA 1 chr3:56511040-56511140 ( 27) ATTTCCATAACAAT 1 chr20:30173549-30173649 ( 49) ATCTGCATAATAAA 1 chr2:203114726-203114826 ( 17) ATTTGCATATTAAA 1 chr4:113906353-113906453 ( 41) ATTTGCATTACAAT 1 chr11:125952389-12595248 ( 60) ATTTGCATGATAAT 1 chr1:88752375-88752475 ( 81) ATCTGCATAAAAAT 1 chr12:116780784-11678088 ( 28) ATTTACATGACAAT 1 chr7:68573241-68573341 ( 36) ATTTACATGAGAAT 1 chr10:12524599-12524699 ( 60) ATGTGCATAACAAA 1 chr6:161584647-161584747 ( 26) ATGTGCATAACAAT 1 chr2:137576498-137576598 ( 45) TTTTACATGACAAA 1 chr5:53620770-53620870 ( 11) ATTTGCATCAGAAT 1 chr20:56574350-56574450 ( 74) TTCTGCATAAAAAT 1 chr8:98795837-98795937 ( 44) ATTTGCATAACAAG 1 chr11:37619453-37619553 ( 67) ATTAGCATATGAAA 1 chr5:164107298-164107398 ( 62) ATCTACATAATAAA 1 chr2:6054206-6054306 ( 47) TTTTGCATATAAAT 1 chr2:237756224-237756324 ( 24) ATTTGCATTTGAAA 1 chr11:85252815-85252915 ( 53) ATTTGCATTTGAAT 1 chr3:177877535-177877635 ( 22) TTCTCCATAACAAA 1 chr1:72500526-72500626 ( 1) ATTTACATATAAAA 1 chr2:135290255-135290355 ( 25) ATGTGCATATCAAA 1 chrX:91526037-91526137 ( 2) ATCTGCACAACAAA 1 chr4:12148054-12148154 ( 30) ATTAACATAAGAAT 1 chr7:157587460-157587560 ( 50) TTTAGCATGACAAT 1 chr2:5135718-5135818 ( 49) TTCTACATGACAAA 1 chr11:113770349-11377044 ( 37) GTTTGCATAATAAA 1 chr2:105501946-105502046 ( 10) TTTAGCATATGAAT 1 chr14:68507445-68507545 ( 83) ATGTGCATGAGAAT 1 chr18:66614298-66614398 ( 6) TTCTACATAAAAAT 1 chr9:114013859-114013959 ( 19) TTTTGCATCTCAAT 1 chr3:136979882-136979982 ( 32) AATTGCATGACAAT 1 chr12:117673200-11767330 ( 63) TTTACCATAACAAT 1 chr2:222776149-222776249 ( 9) TCTTGCATAACAAA 1 chr11:128741063-12874116 ( 15) GTCTGCATAATAAT 1 chr10:11061471-11061571 ( 69) ATTTGCATAACAGA 1 chr7:137928327-137928427 ( 47) GTTTGCATGATAAA 1 chr14:65833953-65834053 ( 47) ATCTCCATTAGAAA 1 chr4:123710266-123710366 ( 28) ATTTCCATAACAAG 1 chr8:89895844-89895944 ( 47) AATTACATAAGAAA 1 chr7:41872500-41872600 ( 34) ATTTACACATCAAA 1 chr4:140796604-140796704 ( 66) ATTAACATGTCAAT 1 chr3:122745463-122745563 ( 79) ATTACCATGAGAAA 1 chr2:191277770-191277870 ( 72) ATTTACATCATAAT 1 chr18:35221213-35221313 ( 36) TTTTGCATAAATAT 1 chr13:30970525-30970625 ( 35) ATTTGCATATATAT 1 chr12:3193908-3194008 ( 46) GTCTGCATTAGAAA 1 chr3:100632143-100632243 ( 36) AATTACATATGAAA 1 chr2:27777756-27777856 ( 43) TTCAACATATGAAT 1 chr2:208630480-208630580 ( 72) TTTAACATGATAAA 1 chr5:130990602-130990702 ( 15) ATTTCCATAATTAA 1 chrX:17620057-17620157 ( 14) TTTAACATATAAAT 1 chr7:89927498-89927598 ( 58) TTCTGCAAAACAAT 1 chr12:13241437-13241537 ( 33) TCCTGCATATGAAT 1 chr19:21581424-21581524 ( 36) TTTAACATTTCAAA 1 chr9:81975925-81976025 ( 17) ATTTGCACTTTAAA 1 chr2:52539088-52539188 ( 77) ATTTGCATCTGTAA 1 chr6:26327835-26327935 ( 58) TTTTACACGTGAAA 1 chr17:2237951-2238051 ( 85) TTCCGCATGACAAA 1 chr7:30120634-30120734 ( 14) TTTTGCATTTGTAT 1 chr15:92657141-92657241 ( 57) AATTGCACATGAAT 1 chr16:53660325-53660425 ( 17) ATCACCATGTAAAA 1 chr7:158940532-158940632 ( 56) ATTAACATAAAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTGCATAWSAAW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 52200 bayes= 10.3487 E= 3.7e-045 117 -1281 -200 21 -232 -300 -1281 173 -1281 32 -200 127 -62 -400 -1281 154 -7 -83 145 -1281 -1281 216 -1281 -1281 185 -1281 -1281 -1281 -431 -168 -1281 173 117 -200 -10 -132 127 -1281 -1281 27 -100 85 39 -73 175 -1281 -1281 -200 183 -1281 -400 -1281 85 -400 -300 73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTGCATAWSAAW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 72 E= 3.7e-045 0.625000 0.000000 0.055556 0.319444 0.055556 0.027778 0.000000 0.916667 0.000000 0.277778 0.055556 0.666667 0.180556 0.013889 0.000000 0.805556 0.263889 0.125000 0.611111 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.013889 0.069444 0.000000 0.916667 0.625000 0.055556 0.208333 0.111111 0.666667 0.000000 0.000000 0.333333 0.138889 0.402778 0.291667 0.166667 0.930556 0.000000 0.000000 0.069444 0.986111 0.000000 0.013889 0.000000 0.500000 0.013889 0.027778 0.458333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTGCATAWSAAW MEME-1 regular expression -------------------------------------------------------------------------------- [AT]T[TC]T[GA]CAT[AG][AT][CG]AA[AT] -------------------------------------------------------------------------------- Time 282.89 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCKBCCCCCCCYBBCHCCBCCCVSSCCS MEME-2 width = 29 sites = 87 llr = 958 E-value = 4.6e-041 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCKBCCCCCCCYBBCHCCBCCCVSSCCS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :122::121111111:3:21:2:32211: pos.-specific C 667:4776666863573653866444556 probability G 22:332122221:332:314113233113 matrix T 111421111111332:4122111:11221 bits 2.2 1.9 1.7 1.5 Relative 1.3 * * Entropy 1.1 * * * * (15.9 bits) 0.9 * * * * * * * 0.6 * * ** ** * * * * * 0.4 ************* **** **** *** 0.2 ***************************** 0.0 ----------------------------- Multilevel CCCTCCCCCCCCCCCCTCCGCCCCCCCCC consensus AGG G TGGGCGAC GAGGTTG sequence AT TT A T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCKBCCCCCCCYBBCHCCBCCCVSSCCS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr10:81052923-81053023 + 50 3.32e-10 GGACAGTGCc ccctccccactcctccacctccccaaccc ttccctcccT chr14:23426139-23426239 - 53 9.08e-10 TTCCGGGCCT CGCTTCCCCCAGCCCCTGCGCCCGGCCCG AACGAGAGGT chr4:55099149-55099249 + 17 1.26e-09 ATTCTCTTCC CGCTCTCCCCCCTCTCTCCACACCCGCCC GGCCCCCTCT chr2:232545521-232545621 - 70 4.38e-09 CC CGCTGCCACCCCCGGCCCAGCTGCGCTCG GAGTCCCCGG chr14:21562372-21562472 - 1 7.96e-09 CCCTCTGGCT CCCTCCCCCTTCATGCCCCTCCCCCTCTG chr2:68870645-68870745 - 64 9.21e-09 CGACCCGG CCCGCGCCGGACTCCCTGTCCCCGCCTCC GGTGGCCGTG chr4:111536958-111537058 + 11 9.21e-09 TCCTTCCTTC CCCTCCGCCCTTTGGCCCTCCCCGCCCCC TACCAGGCTG chr9:27246844-27246944 + 42 1.23e-08 TGAATTTGAG CCATACCCCCCCCCCCACCCCACACACAC ACAAATTTTC chr17:59489824-59489924 + 49 1.42e-08 CAGGCCAGGG CCCGGGCCGCGGCCTCACAGCCCGCCTCG GGCGAGAGCG chr12:6873637-6873737 - 57 1.42e-08 CCTTCCTTTC CTCTTCCCTCCACTCCACCTCCCAGCCCC GCCTGCTGTC chr17:63096710-63096810 - 39 1.64e-08 GGTGGCGCTG TCCGGCCCCCGCCGGGACCCCGCCGAGCG GCAGGTGAGA chr10:65274292-65274392 - 38 2.86e-08 AGTTTTTCAT CCCTTCCACCCCCTCCCTCCCTCCTCTAG TAGTCTCCAG chr13:49879539-49879639 + 44 2.86e-08 ATTTAAGGCT CCCTCCCGGCCCTCTCACATCCCCACATG CCCCGGACAA chr6:154864044-154864144 + 3 4.30e-08 GA CCCTTCCTCCCACGGCTTCCCCCCGGCTG TGTCAGTGAA chr22:36725426-36725526 + 29 4.91e-08 AACATTTTTG TCATCCCAGCCCCCTGCCCTCCCCCACTG CGTCTCCCTG chr15:41576148-41576248 - 52 4.91e-08 GATGCACTCG GCCTCCCGGGGGCTGCTCGCCCCCGGCCC AGAGGCCAGT chr3:105085140-105085240 + 32 4.91e-08 GGACCCAAGG TTCGCTCCCCACCGCCACCGCCCTGCCCC ACTATTCTCT chr4:184021006-184021106 - 63 9.47e-08 CAGTGAGGC CCTAGCCCACCCCCGCCGCCCAGAGGCCG AAGGTGTCCT chr9:16326540-16326640 - 29 1.08e-07 CCTCCTTCTC CCAGCCACCCTCCTTCCCCACCGGCATCC TTTCTCCTCC chr22:37959345-37959445 - 60 1.22e-07 CTGAATCATC TTCTTCCCTCCCTGGCACCCCCGGCACCG AGAAGTCCTC chr17:16353415-16353515 - 70 1.22e-07 TT CCCATCAGCCCCAAGCCCATCCCCAGCCC TCTGGGCCTC chr8:144371635-144371735 - 41 1.39e-07 TCTAGGAGTC CGCAGCCTCCTCCGCCCGGGCCTCTCCCC GCTGGCTCAG chr14:65183902-65184002 - 44 2.28e-07 GACAACCCTG GCCTTCCCCCTCCCTCAGGCCTCGCCTCT TCTTCGAAGG chr14:23341761-23341861 + 4 2.28e-07 TCT CCCGCCCCCCACTCCCTCTTCCGATTAAC TGCCCGGAAG chr9:131534143-131534243 - 67 2.28e-07 CTTCT GCCGCCGCCGCCCGCGTTAGCCGCGGGAC GGGTCGGGGG chr19:17358149-17358249 - 15 2.58e-07 GTCGTCTCTG CCCACCCACGCCTTCCTCTCTCCCAGCAG GGATTACATC chr22:44429791-44429891 - 29 2.58e-07 CATATGCGCA TGAGGCCCCGCCCCGGACCTCCCCCTTTC TCCAGCCTTG chr1:55266001-55266101 - 47 2.91e-07 TTTCCAATGT GCATCCCCCGCCTGCCCCAGCCAGGCCTG TAGCTCTCTC chr3:8543457-8543557 + 43 4.17e-07 ATTCAGCCGC CGCTGTCCCCGCTGCGCGCCCTCGCGCCT CTGCCTGAGA chr14:68066960-68067060 + 7 4.69e-07 CGTCAC CACGCCCCGCCCTAAGCCTGCGCAGCCTC AGTTGCGCGC chr8:72273989-72274089 - 7 4.69e-07 GCGGCAGCGG CCAGGCGCCTGCCCCCTGCGCCGAGCTTT CCCCTG chr12:125036223-12503632 - 36 5.92e-07 AGAGGAAGAA AACGGCCCGCGCCTCCTTCCCCCAGGCCT CTGGGCCTGC chr12:56101813-56101913 + 1 6.65e-07 . TCCGGCTCCGCCCCTGCGCGGCGCTCTCC TCCCCTTCTC chr3:122745463-122745563 + 1 6.65e-07 . CCCGCTCCCTCCCTCCTCGCTGGATCTCC CGCAGGACGT chr16:7815397-7815497 - 65 7.45e-07 TATTCTT CCCATCCTCTCCCTCCTGACCCCAATTTC TGACTTTGAA chr10:11061471-11061571 - 39 8.35e-07 CATAACAGAT TCTATCATCCCCCTCCTCCACCCCCCTCC TTTTTTTTGG chr20:55980331-55980431 + 15 9.35e-07 agtcagaatt caaacccaggcctggctccgcgcgaggcc cttgttcCCA chr8:126439419-126439519 + 28 1.05e-06 cttctaatct ccctcccgggcctcccactgggcaaactg ggctggaagc chr8:28748065-28748165 - 25 1.17e-06 CTGAGTTCTC TCCGCCCGGCACAGCCCCCTCCCCAACGT CCCAGTACGA chr8:57360572-57360672 - 44 1.17e-06 GAACTGAGAC CCCAGTCCCCGCAAGCCCAGCCTACGCAG GAGAGCGCTG chr1:32666050-32666150 + 38 1.31e-06 GCATACGCGG GGATGCTCCTCCCATCTCACCCCACCGCG CTAAGGAGAA chrX:1552063-1552163 - 72 1.63e-06 . TCCATCTCCAGCCCCCTCCCCCTGTTCCC ATGACAACCA chr15:90717703-90717803 + 5 2.02e-06 TTCC CCCTCCCCCATCACTCCTGGCACGTCTAC AGGCCGGAAC chr14:105635028-10563512 + 37 2.78e-06 AGACTGACAG CTCGCTCGCCCATTCGTCACCCGCGCACC TGCATATGCA chr12:57640649-57640749 - 30 3.08e-06 TCTACTCAAT CCCACCTCTCCCTTCCTTTCCTCCAAGCC TTTCTCTGCC chr7:83836472-83836572 - 57 3.08e-06 GTCTCTTGCT GTCAGCCCCACCCTGCATCTCCCAGGAAC CATGACAATA chr17:42092244-42092344 - 54 3.08e-06 GCTGCGTGTC CCATCCCCGCGCCTGCTTCTCTGACTGGG GTGAGGCCGC chr8:98795837-98795937 + 67 3.08e-06 gaccaccttc cctagccaggcctttccgtccctccctcc cataa chr5:79703913-79704013 + 16 3.08e-06 GTAAGAGCCC CCCGTGACCGGTCGTCTCGGCCTCCCCTC AGCCCTGCTG chr4:6988773-6988873 + 47 3.42e-06 AGCCAGGCCT GACGCGCCGAGCCGGCAGCGCGGATCGCC TCGCTGTGTC chr3:194992194-194992294 + 10 3.79e-06 AGGCTTTAA GCCGTCTCGGCCTCTCCCTGCACACGAGC TGCAGCTAGG chr15:75080185-75080285 - 67 3.79e-06 CACAG GCCTCCCCTCACTGACTCCTCGTCTCCTC TACCCGCCAG chr3:129033948-129034048 + 72 4.20e-06 CCGAAAAGCC CACGCCGGCCGCTCTGACCGGCCGACACG chr19:46552994-46553094 + 3 4.65e-06 ta tcctccccacacaaccacagctgacgcgc tcttaaaagc chr4:55143346-55143446 + 56 5.69e-06 ACAGGAAAGA CACTCGCCCAGCTGTCCGCCCGCAGAGAG CTGGCTACGG chr15:57025799-57025899 + 72 6.28e-06 CGCGGGCCCT CGAAGACCCACGCGCCCCGCCACGCGCCG chr11:61722438-61722538 + 38 7.65e-06 ACAGTCTCAG CCATCTCCTCGCTGCGTCCACACAATTcc acccccaccc chr4:26032081-26032181 + 24 7.65e-06 CAATTTTCCC CTCTCCCCATCTCATCACGCCTCCTCCCC CTGCAGCCAG chr12:117104177-11710427 - 63 7.65e-06 CCATTCGGG CCCTTGATCCCCCACCTCTGCGTCTCCCT GTGTCATGCG chr5:14115471-14115571 - 53 8.44e-06 ATAGTTTCTC CACTCTCGGTCCCATGACTTCACCCCCGC AACTCTTGAA chr2:33824453-33824553 - 52 1.02e-05 CGCTCCCCTT CGCGTGGTCCCCACGCCCAGCTGCCACGC AGCCGGTCCT chr15:63829463-63829563 + 52 1.24e-05 GCCTCCTTTT CTCTCCCACCTCCCGTTCCTCATCCATCC TAGCTTCAAG chr17:76356932-76357032 - 30 1.36e-05 CTAGGAGACC CCAGGGCGCCCTCTGGCGGACGCGGGCCG TAGGTTGGGG chr4:38754796-38754896 + 18 1.49e-05 CCTCCCTGGA GCCTGCAAGCCCTCTCTGAGGACGCACTG ACTTAGCAAG chr17:43348255-43348355 + 14 1.49e-05 CCAGGCCTCC CCTTGCTCCATCTGCCACCGCAGAGCAGC CCCTCCAGCC chr22:46751015-46751115 + 14 1.49e-05 tcatgggctc ggatctcacccctgcctcttgcccactct gacatggtac chr19:50358965-50359065 - 6 1.80e-05 GCGCTTTACA CAAATTCCCTCCCTCCAGCCTCCCGGTGG CCCTA chr3:66603409-66603509 + 9 1.80e-05 TTTGGAAT GCTATCGCCCTCCCCCTCTTCCCGGTCAT GTGTCACAGC chr7:96635885-96635985 - 28 1.97e-05 TGTGGACTAA CTCGTCGAACGAAGCCTGCGCCGGGCCCG GGACTCAGCC chr12:101717569-10171766 - 52 2.16e-05 CCAACTCCTG ACCTCGGGATCCATCCACCTCCGCCTCCC AAAGAGCTGG chr3:46759305-46759405 + 1 2.16e-05 . GCCGCCCCCACGACGGCGCCCCCTGTTGG CCGCATGCCG chr2:203114726-203114826 - 54 2.36e-05 GTGCCTGGCA ACATGGCCTCCCCCACATAGCCCCACACG TGTAAAACAT chr11:58421634-58421734 - 44 2.58e-05 AGACTTGGCC CAAGTGCCATCCCACGTGGGCAGCCCCTG GGCGCTGCCA chr2:178076883-178076983 - 10 2.82e-05 CAGTGTCTGT GACTGCGCCGCCTGCCTGAGGGCATGTAC TGAAAAGCC chr20:37354654-37354754 - 53 3.08e-05 GAAAGCTGCG GCCTGCCAGCCCCTGCTAGCTCGGAGGTC GTTGCCAAGA chr17:80739741-80739841 - 48 3.08e-05 AGAAACCTAC CCTGGGGAGCCCCGGCTGCGTGGCACCAC TGCCCTCTGC chr2:10379917-10380017 + 34 3.36e-05 CCCCTGCTGG CGAGGCCGGCCCCCAGCGCAGACAGGGCC TCATCGGTAG chr7:43031580-43031680 + 21 4.00e-05 GGAGCCCCCT TCCTACCACCTGCTACTGTGCCCCTACCG TGTCTGCTGC chr10:120354019-12035411 - 6 4.36e-05 TTCTGGGGCT CCCAGGAGCGCCAGCGCCAGCTCTACGCC TGGGG chr5:150226691-150226791 + 3 4.75e-05 AG TACTGCTCTGCACGTGTGCTCCCCCGCCT GATGAGGTAA chr16:68205894-68205994 + 9 5.62e-05 cattggct cgaactcctgacctcgttatccgcccacc tcagcctccc chr2:113299885-113299985 - 65 8.47e-05 GGTACAC GCCGGACGCCAGTCTCTCGGTACACGCCG GAAGTAGTGG chr7:101961366-101961466 - 36 9.18e-05 CACAAGCACA CGCGTGCCCATGCACGCATGCACACGCTC ATGCATATGC chr1:109618649-109618749 - 28 1.71e-04 TACAGGGAGG CGCTCCGGCCTCCTCCCTTAGAGACTGTC GCATTTCCGC chr13:31191611-31191711 + 2 4.35e-04 G CTCGCGCGGACCACGGAACAGCGACGCGC AAGCAGGTCT chr4:83588328-83588428 + 44 4.65e-04 TTTTTATaca cacacacacacacacgcacgcacgcacgc atgcaAATTC chr5:67272586-67272686 + 48 6.49e-04 AACAAAGACA TCCGTGAATTATCGTCACAGCCCACCGTG CCAGCTTTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCKBCCCCCCCYBBCHCCBCCCVSSCCS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:81052923-81053023 3.3e-10 49_[+2]_22 chr14:23426139-23426239 9.1e-10 52_[-2]_19 chr4:55099149-55099249 1.3e-09 16_[+2]_55 chr2:232545521-232545621 4.4e-09 69_[-2]_2 chr14:21562372-21562472 8e-09 [-2]_71 chr2:68870645-68870745 9.2e-09 63_[-2]_8 chr4:111536958-111537058 9.2e-09 10_[+2]_61 chr9:27246844-27246944 1.2e-08 41_[+2]_30 chr17:59489824-59489924 1.4e-08 48_[+2]_23 chr12:6873637-6873737 1.4e-08 56_[-2]_15 chr17:63096710-63096810 1.6e-08 38_[-2]_33 chr10:65274292-65274392 2.9e-08 37_[-2]_34 chr13:49879539-49879639 2.9e-08 43_[+2]_28 chr6:154864044-154864144 4.3e-08 2_[+2]_69 chr22:36725426-36725526 4.9e-08 28_[+2]_43 chr15:41576148-41576248 4.9e-08 51_[-2]_20 chr3:105085140-105085240 4.9e-08 31_[+2]_40 chr4:184021006-184021106 9.5e-08 62_[-2]_9 chr9:16326540-16326640 1.1e-07 28_[-2]_43 chr22:37959345-37959445 1.2e-07 59_[-2]_12 chr17:16353415-16353515 1.2e-07 69_[-2]_2 chr8:144371635-144371735 1.4e-07 40_[-2]_31 chr14:65183902-65184002 2.3e-07 43_[-2]_28 chr14:23341761-23341861 2.3e-07 3_[+2]_68 chr9:131534143-131534243 2.3e-07 66_[-2]_5 chr19:17358149-17358249 2.6e-07 14_[-2]_57 chr22:44429791-44429891 2.6e-07 28_[-2]_43 chr1:55266001-55266101 2.9e-07 46_[-2]_25 chr3:8543457-8543557 4.2e-07 42_[+2]_29 chr14:68066960-68067060 4.7e-07 6_[+2]_65 chr8:72273989-72274089 4.7e-07 6_[-2]_65 chr12:125036223-12503632 5.9e-07 35_[-2]_36 chr12:56101813-56101913 6.6e-07 [+2]_71 chr3:122745463-122745563 6.6e-07 [+2]_71 chr16:7815397-7815497 7.5e-07 64_[-2]_7 chr10:11061471-11061571 8.4e-07 38_[-2]_33 chr20:55980331-55980431 9.4e-07 14_[+2]_57 chr8:126439419-126439519 1e-06 27_[+2]_44 chr8:28748065-28748165 1.2e-06 24_[-2]_47 chr8:57360572-57360672 1.2e-06 43_[-2]_28 chr1:32666050-32666150 1.3e-06 37_[+2]_34 chrX:1552063-1552163 1.6e-06 71_[-2] chr15:90717703-90717803 2e-06 4_[+2]_67 chr14:105635028-10563512 2.8e-06 36_[+2]_35 chr12:57640649-57640749 3.1e-06 29_[-2]_42 chr7:83836472-83836572 3.1e-06 56_[-2]_15 chr17:42092244-42092344 3.1e-06 53_[-2]_18 chr8:98795837-98795937 3.1e-06 66_[+2]_5 chr5:79703913-79704013 3.1e-06 15_[+2]_56 chr4:6988773-6988873 3.4e-06 46_[+2]_25 chr3:194992194-194992294 3.8e-06 9_[+2]_62 chr15:75080185-75080285 3.8e-06 66_[-2]_5 chr3:129033948-129034048 4.2e-06 71_[+2] chr19:46552994-46553094 4.7e-06 2_[+2]_69 chr4:55143346-55143446 5.7e-06 55_[+2]_16 chr15:57025799-57025899 6.3e-06 71_[+2] chr11:61722438-61722538 7.7e-06 37_[+2]_34 chr4:26032081-26032181 7.7e-06 23_[+2]_48 chr12:117104177-11710427 7.7e-06 62_[-2]_9 chr5:14115471-14115571 8.4e-06 52_[-2]_19 chr2:33824453-33824553 1e-05 51_[-2]_20 chr15:63829463-63829563 1.2e-05 51_[+2]_20 chr17:76356932-76357032 1.4e-05 29_[-2]_42 chr4:38754796-38754896 1.5e-05 17_[+2]_54 chr17:43348255-43348355 1.5e-05 13_[+2]_58 chr22:46751015-46751115 1.5e-05 13_[+2]_58 chr19:50358965-50359065 1.8e-05 5_[-2]_66 chr3:66603409-66603509 1.8e-05 8_[+2]_63 chr7:96635885-96635985 2e-05 27_[-2]_44 chr12:101717569-10171766 2.2e-05 51_[-2]_20 chr3:46759305-46759405 2.2e-05 [+2]_71 chr2:203114726-203114826 2.4e-05 53_[-2]_18 chr11:58421634-58421734 2.6e-05 43_[-2]_28 chr2:178076883-178076983 2.8e-05 9_[-2]_62 chr20:37354654-37354754 3.1e-05 52_[-2]_19 chr17:80739741-80739841 3.1e-05 47_[-2]_24 chr2:10379917-10380017 3.4e-05 33_[+2]_38 chr7:43031580-43031680 4e-05 20_[+2]_51 chr10:120354019-12035411 4.4e-05 5_[-2]_66 chr5:150226691-150226791 4.7e-05 2_[+2]_69 chr16:68205894-68205994 5.6e-05 8_[+2]_63 chr2:113299885-113299985 8.5e-05 64_[-2]_7 chr7:101961366-101961466 9.2e-05 35_[-2]_36 chr1:109618649-109618749 0.00017 27_[-2]_44 chr13:31191611-31191711 0.00043 1_[+2]_70 chr4:83588328-83588428 0.00047 43_[+2]_28 chr5:67272586-67272686 0.00065 47_[+2]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCKBCCCCCCCYBBCHCCBCCCVSSCCS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCKBCCCCCCCYBBCHCCBCCCVSSCCS width=29 seqs=87 chr10:81052923-81053023 ( 50) CCCTCCCCACTCCTCCACCTCCCCAACCC 1 chr14:23426139-23426239 ( 53) CGCTTCCCCCAGCCCCTGCGCCCGGCCCG 1 chr4:55099149-55099249 ( 17) CGCTCTCCCCCCTCTCTCCACACCCGCCC 1 chr2:232545521-232545621 ( 70) CGCTGCCACCCCCGGCCCAGCTGCGCTCG 1 chr14:21562372-21562472 ( 1) CCCTCCCCCTTCATGCCCCTCCCCCTCTG 1 chr2:68870645-68870745 ( 64) CCCGCGCCGGACTCCCTGTCCCCGCCTCC 1 chr4:111536958-111537058 ( 11) CCCTCCGCCCTTTGGCCCTCCCCGCCCCC 1 chr9:27246844-27246944 ( 42) CCATACCCCCCCCCCCACCCCACACACAC 1 chr17:59489824-59489924 ( 49) CCCGGGCCGCGGCCTCACAGCCCGCCTCG 1 chr12:6873637-6873737 ( 57) CTCTTCCCTCCACTCCACCTCCCAGCCCC 1 chr17:63096710-63096810 ( 39) TCCGGCCCCCGCCGGGACCCCGCCGAGCG 1 chr10:65274292-65274392 ( 38) CCCTTCCACCCCCTCCCTCCCTCCTCTAG 1 chr13:49879539-49879639 ( 44) CCCTCCCGGCCCTCTCACATCCCCACATG 1 chr6:154864044-154864144 ( 3) CCCTTCCTCCCACGGCTTCCCCCCGGCTG 1 chr22:36725426-36725526 ( 29) TCATCCCAGCCCCCTGCCCTCCCCCACTG 1 chr15:41576148-41576248 ( 52) GCCTCCCGGGGGCTGCTCGCCCCCGGCCC 1 chr3:105085140-105085240 ( 32) TTCGCTCCCCACCGCCACCGCCCTGCCCC 1 chr4:184021006-184021106 ( 63) CCTAGCCCACCCCCGCCGCCCAGAGGCCG 1 chr9:16326540-16326640 ( 29) CCAGCCACCCTCCTTCCCCACCGGCATCC 1 chr22:37959345-37959445 ( 60) TTCTTCCCTCCCTGGCACCCCCGGCACCG 1 chr17:16353415-16353515 ( 70) CCCATCAGCCCCAAGCCCATCCCCAGCCC 1 chr8:144371635-144371735 ( 41) CGCAGCCTCCTCCGCCCGGGCCTCTCCCC 1 chr14:65183902-65184002 ( 44) GCCTTCCCCCTCCCTCAGGCCTCGCCTCT 1 chr14:23341761-23341861 ( 4) CCCGCCCCCCACTCCCTCTTCCGATTAAC 1 chr9:131534143-131534243 ( 67) GCCGCCGCCGCCCGCGTTAGCCGCGGGAC 1 chr19:17358149-17358249 ( 15) CCCACCCACGCCTTCCTCTCTCCCAGCAG 1 chr22:44429791-44429891 ( 29) TGAGGCCCCGCCCCGGACCTCCCCCTTTC 1 chr1:55266001-55266101 ( 47) GCATCCCCCGCCTGCCCCAGCCAGGCCTG 1 chr3:8543457-8543557 ( 43) CGCTGTCCCCGCTGCGCGCCCTCGCGCCT 1 chr14:68066960-68067060 ( 7) CACGCCCCGCCCTAAGCCTGCGCAGCCTC 1 chr8:72273989-72274089 ( 7) CCAGGCGCCTGCCCCCTGCGCCGAGCTTT 1 chr12:125036223-12503632 ( 36) AACGGCCCGCGCCTCCTTCCCCCAGGCCT 1 chr12:56101813-56101913 ( 1) TCCGGCTCCGCCCCTGCGCGGCGCTCTCC 1 chr3:122745463-122745563 ( 1) CCCGCTCCCTCCCTCCTCGCTGGATCTCC 1 chr16:7815397-7815497 ( 65) CCCATCCTCTCCCTCCTGACCCCAATTTC 1 chr10:11061471-11061571 ( 39) TCTATCATCCCCCTCCTCCACCCCCCTCC 1 chr20:55980331-55980431 ( 15) CAAACCCAGGCCTGGCTCCGCGCGAGGCC 1 chr8:126439419-126439519 ( 28) CCCTCCCGGGCCTCCCACTGGGCAAACTG 1 chr8:28748065-28748165 ( 25) TCCGCCCGGCACAGCCCCCTCCCCAACGT 1 chr8:57360572-57360672 ( 44) CCCAGTCCCCGCAAGCCCAGCCTACGCAG 1 chr1:32666050-32666150 ( 38) GGATGCTCCTCCCATCTCACCCCACCGCG 1 chrX:1552063-1552163 ( 72) TCCATCTCCAGCCCCCTCCCCCTGTTCCC 1 chr15:90717703-90717803 ( 5) CCCTCCCCCATCACTCCTGGCACGTCTAC 1 chr14:105635028-10563512 ( 37) CTCGCTCGCCCATTCGTCACCCGCGCACC 1 chr12:57640649-57640749 ( 30) CCCACCTCTCCCTTCCTTTCCTCCAAGCC 1 chr7:83836472-83836572 ( 57) GTCAGCCCCACCCTGCATCTCCCAGGAAC 1 chr17:42092244-42092344 ( 54) CCATCCCCGCGCCTGCTTCTCTGACTGGG 1 chr8:98795837-98795937 ( 67) CCTAGCCAGGCCTTTCCGTCCCTCCCTCC 1 chr5:79703913-79704013 ( 16) CCCGTGACCGGTCGTCTCGGCCTCCCCTC 1 chr4:6988773-6988873 ( 47) GACGCGCCGAGCCGGCAGCGCGGATCGCC 1 chr3:194992194-194992294 ( 10) GCCGTCTCGGCCTCTCCCTGCACACGAGC 1 chr15:75080185-75080285 ( 67) GCCTCCCCTCACTGACTCCTCGTCTCCTC 1 chr3:129033948-129034048 ( 72) CACGCCGGCCGCTCTGACCGGCCGACACG 1 chr19:46552994-46553094 ( 3) TCCTCCCCACACAACCACAGCTGACGCGC 1 chr4:55143346-55143446 ( 56) CACTCGCCCAGCTGTCCGCCCGCAGAGAG 1 chr15:57025799-57025899 ( 72) CGAAGACCCACGCGCCCCGCCACGCGCCG 1 chr11:61722438-61722538 ( 38) CCATCTCCTCGCTGCGTCCACACAATTCC 1 chr4:26032081-26032181 ( 24) CTCTCCCCATCTCATCACGCCTCCTCCCC 1 chr12:117104177-11710427 ( 63) CCCTTGATCCCCCACCTCTGCGTCTCCCT 1 chr5:14115471-14115571 ( 53) CACTCTCGGTCCCATGACTTCACCCCCGC 1 chr2:33824453-33824553 ( 52) CGCGTGGTCCCCACGCCCAGCTGCCACGC 1 chr15:63829463-63829563 ( 52) CTCTCCCACCTCCCGTTCCTCATCCATCC 1 chr17:76356932-76357032 ( 30) CCAGGGCGCCCTCTGGCGGACGCGGGCCG 1 chr4:38754796-38754896 ( 18) GCCTGCAAGCCCTCTCTGAGGACGCACTG 1 chr17:43348255-43348355 ( 14) CCTTGCTCCATCTGCCACCGCAGAGCAGC 1 chr22:46751015-46751115 ( 14) GGATCTCACCCCTGCCTCTTGCCCACTCT 1 chr19:50358965-50359065 ( 6) CAAATTCCCTCCCTCCAGCCTCCCGGTGG 1 chr3:66603409-66603509 ( 9) GCTATCGCCCTCCCCCTCTTCCCGGTCAT 1 chr7:96635885-96635985 ( 28) CTCGTCGAACGAAGCCTGCGCCGGGCCCG 1 chr12:101717569-10171766 ( 52) ACCTCGGGATCCATCCACCTCCGCCTCCC 1 chr3:46759305-46759405 ( 1) GCCGCCCCCACGACGGCGCCCCCTGTTGG 1 chr2:203114726-203114826 ( 54) ACATGGCCTCCCCCACATAGCCCCACACG 1 chr11:58421634-58421734 ( 44) CAAGTGCCATCCCACGTGGGCAGCCCCTG 1 chr2:178076883-178076983 ( 10) GACTGCGCCGCCTGCCTGAGGGCATGTAC 1 chr20:37354654-37354754 ( 53) GCCTGCCAGCCCCTGCTAGCTCGGAGGTC 1 chr17:80739741-80739841 ( 48) CCTGGGGAGCCCCGGCTGCGTGGCACCAC 1 chr2:10379917-10380017 ( 34) CGAGGCCGGCCCCCAGCGCAGACAGGGCC 1 chr7:43031580-43031680 ( 21) TCCTACCACCTGCTACTGTGCCCCTACCG 1 chr10:120354019-12035411 ( 6) CCCAGGAGCGCCAGCGCCAGCTCTACGCC 1 chr5:150226691-150226791 ( 3) TACTGCTCTGCACGTGTGCTCCCCCGCCT 1 chr16:68205894-68205994 ( 9) CGAACTCCTGACCTCGTTATCCGCCCACC 1 chr2:113299885-113299985 ( 65) GCCGGACGCCAGTCTCTCGGTACACGCCG 1 chr7:101961366-101961466 ( 36) CGCGTGCCCATGCACGCATGCACACGCTC 1 chr1:109618649-109618749 ( 28) CGCTCCGGCCTCCTCCCTTAGAGACTGTC 1 chr13:31191611-31191711 ( 2) CTCGCGCGGACCACGGAACAGCGACGCGC 1 chr4:83588328-83588428 ( 44) CACACACACACACACGCACGCACGCACGC 1 chr5:67272586-67272686 ( 48) TCCGTGAATTATCGTCACAGCCCACCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCKBCCCCCCCYBBCHCCBCCCVSSCCS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 9.97104 E= 4.6e-041 -300 150 -28 -89 -101 142 -47 -142 -42 170 -1309 -201 -42 -1309 63 69 -359 101 42 -27 -300 155 -28 -113 -159 165 -82 -178 -68 139 -37 -201 -178 139 4 -142 -113 134 -28 -113 -127 134 -37 -89 -201 181 -128 -227 -101 137 -1309 5 -113 48 42 -7 -227 104 18 -27 -1309 174 11 -459 -7 53 -1309 58 -259 134 25 -113 -42 108 -69 -59 -159 42 81 -34 -1309 189 -111 -201 -50 131 -69 -127 -459 150 25 -159 16 93 4 -300 -59 85 25 -89 -68 93 31 -113 -142 121 -58 -27 -101 125 -82 -42 -1309 131 63 -142 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCKBCCCCCCCYBBCHCCBCCCVSSCCS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 87 E= 4.6e-041 0.034483 0.632184 0.183908 0.149425 0.137931 0.597701 0.160920 0.103448 0.206897 0.724138 0.000000 0.068966 0.206897 0.000000 0.344828 0.448276 0.022989 0.448276 0.298851 0.229885 0.034483 0.655172 0.183908 0.126437 0.091954 0.701149 0.126437 0.080460 0.172414 0.586207 0.172414 0.068966 0.080460 0.586207 0.229885 0.103448 0.126437 0.563218 0.183908 0.126437 0.114943 0.563218 0.172414 0.149425 0.068966 0.781609 0.091954 0.057471 0.137931 0.574713 0.000000 0.287356 0.126437 0.310345 0.298851 0.264368 0.057471 0.459770 0.252874 0.229885 0.000000 0.747126 0.241379 0.011494 0.264368 0.321839 0.000000 0.413793 0.045977 0.563218 0.264368 0.126437 0.206897 0.471264 0.137931 0.183908 0.091954 0.298851 0.390805 0.218391 0.000000 0.827586 0.103448 0.068966 0.195402 0.551724 0.137931 0.114943 0.011494 0.632184 0.264368 0.091954 0.310345 0.425287 0.229885 0.034483 0.183908 0.402299 0.264368 0.149425 0.172414 0.425287 0.275862 0.126437 0.103448 0.517241 0.149425 0.229885 0.137931 0.528736 0.126437 0.206897 0.000000 0.551724 0.344828 0.103448 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCKBCCCCCCCYBBCHCCBCCCVSSCCS MEME-2 regular expression -------------------------------------------------------------------------------- CC[CA][TGA][CGT]CCC[CG]CCC[CT][CGT][CGT][CG][TCA][CG][CA][GCT]CC[CG][CAG][CG][CG][CT][CT][CG] -------------------------------------------------------------------------------- Time 548.16 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAGTGCTGGGATTACAGGCRTGAGCCAC MEME-3 width = 29 sites = 7 llr = 244 E-value = 5.1e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAGTGCTGGGATTACAGGCRTGAGCCAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A aaa111:::::a::a:a1::4:3a:::9: pos.-specific C ::::1:7::::::::a:::9:::::9a1a probability G :::9:9::aaa::::::7a:6:7:a:::: matrix T ::::7:3a::::aa:::1:1:a:::1::: bits 2.2 *** * * * * * 1.9 *** ********** * * ** * * 1.7 *** ********** * * ** * * 1.5 **** * ********** ** * **** * Relative 1.3 **** ************ ** ******** Entropy 1.1 **** ************ *********** (50.3 bits) 0.9 **** ************************ 0.6 ***************************** 0.4 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel AAAGTGCTGGGATTACAGGCGTGAGCCAC consensus T A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTGCTGGGATTACAGGCRTGAGCCAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr16:68205894-68205994 + 48 2.11e-18 tcagcctccc aaagtgctgggattacaggcgtgagccac cgcgcctggc chr2:27031611-27031711 + 4 4.74e-18 ccc aaagtgctgggattacaggcatgagccac cgtgcccagc chr9:124119876-124119976 + 46 2.20e-17 atggccttcc aaagtgctgggattacaggcataagccac tgcgcccggc chr16:53660325-53660425 - 67 1.93e-16 CTCCC AAAGTGCTGGGATTACAGGCGTGAGTCCC CACGGCCAGC chr12:101717569-10171766 - 23 5.12e-16 TCCGCCTCCC AAAGAGCTGGGATTACATGCGTAAGCCAC CAGGGGGCGT chr7:137784351-137784451 - 72 7.16e-16 . AAAGCATTGGGATTACAGGCATGAGCCAC TATGCCCACC chr7:122087761-122087861 + 52 2.52e-15 tcagtctccc aaaatgttgggattacaagtgtgagccac tgcacccagc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTGCTGGGATTACAGGCRTGAGCCAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:68205894-68205994 2.1e-18 47_[+3]_24 chr2:27031611-27031711 4.7e-18 3_[+3]_68 chr9:124119876-124119976 2.2e-17 45_[+3]_26 chr16:53660325-53660425 1.9e-16 66_[-3]_5 chr12:101717569-10171766 5.1e-16 22_[-3]_49 chr7:137784351-137784451 7.2e-16 71_[-3] chr7:122087761-122087861 2.5e-15 51_[+3]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTGCTGGGATTACAGGCRTGAGCCAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAGTGCTGGGATTACAGGCRTGAGCCAC width=29 seqs=7 chr16:68205894-68205994 ( 48) AAAGTGCTGGGATTACAGGCGTGAGCCAC 1 chr2:27031611-27031711 ( 4) AAAGTGCTGGGATTACAGGCATGAGCCAC 1 chr9:124119876-124119976 ( 46) AAAGTGCTGGGATTACAGGCATAAGCCAC 1 chr16:53660325-53660425 ( 67) AAAGTGCTGGGATTACAGGCGTGAGTCCC 1 chr12:101717569-10171766 ( 23) AAAGAGCTGGGATTACATGCGTAAGCCAC 1 chr7:137784351-137784451 ( 72) AAAGCATTGGGATTACAGGCATGAGCCAC 1 chr7:122087761-122087861 ( 52) AAAATGTTGGGATTACAAGTGTGAGCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTGCTGGGATTACAGGCRTGAGCCAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 43200 bayes= 12.435 E= 5.1e-028 185 -945 -945 -945 185 -945 -945 -945 185 -945 -945 -945 -95 -945 194 -945 -95 -64 -945 137 -95 -945 194 -945 -945 168 -945 4 -945 -945 -945 185 -945 -945 216 -945 -945 -945 216 -945 -945 -945 216 -945 185 -945 -945 -945 -945 -945 -945 185 -945 -945 -945 185 185 -945 -945 -945 -945 216 -945 -945 185 -945 -945 -945 -95 -945 168 -95 -945 -945 216 -945 -945 194 -945 -95 63 -945 136 -945 -945 -945 -945 185 4 -945 168 -945 185 -945 -945 -945 -945 -945 216 -945 -945 194 -945 -95 -945 216 -945 -945 163 -64 -945 -945 -945 216 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTGCTGGGATTACAGGCRTGAGCCAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 7 E= 5.1e-028 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.142857 0.142857 0.000000 0.714286 0.142857 0.000000 0.857143 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.714286 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.428571 0.000000 0.571429 0.000000 0.000000 0.000000 0.000000 1.000000 0.285714 0.000000 0.714286 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTGCTGGGATTACAGGCRTGAGCCAC MEME-3 regular expression -------------------------------------------------------------------------------- AAAGTG[CT]TGGGATTACAGGC[GA]T[GA]AGCCAC -------------------------------------------------------------------------------- Time 800.89 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:85709531-85709631 3.36e-01 100 chr20:47899778-47899878 3.70e-01 100 chr6:8812567-8812667 1.75e-01 100 chr16:68205894-68205994 2.10e-15 8_[+2(5.62e-05)]_10_[+3(2.11e-18)]_\ 24 chr2:79923809-79923909 8.40e-01 100 chr10:10403516-10403616 1.16e-01 100 chr12:6873637-6873737 1.63e-04 56_[-2(1.42e-08)]_15 chrX:17620057-17620157 2.79e-03 13_[+1(1.82e-05)]_73 chr5:45655231-45655331 5.73e-01 100 chr17:49799293-49799393 7.49e-01 100 chr17:17384524-17384624 9.55e-01 100 chr3:109074555-109074655 5.17e-02 100 chr1:208169543-208169643 5.42e-01 100 chr11:125850804-12585090 1.90e-01 100 chr9:118477121-118477221 5.89e-01 100 chr12:18622089-18622189 2.67e-01 100 chr3:136979882-136979982 9.51e-03 31_[+1(5.00e-06)]_55 chr13:37582837-37582937 4.79e-01 100 chr6:26188216-26188316 5.75e-01 100 chr12:117104177-11710427 5.17e-04 62_[-2(7.65e-06)]_9 chr3:46759305-46759405 1.63e-02 [+2(2.16e-05)]_10_[-2(3.42e-06)]_\ [+2(1.36e-05)]_3 chr1:32666050-32666150 3.04e-03 37_[+2(1.31e-06)]_34 chr10:117735102-11773520 2.54e-01 100 chr3:109694451-109694551 1.68e-01 76_[+1(9.00e-05)]_10 chr8:72273989-72274089 3.55e-03 6_[-2(4.69e-07)]_[-2(5.62e-05)]_36 chr16:77426761-77426861 9.15e-01 100 chr7:89927498-89927598 4.85e-02 57_[-1(2.10e-05)]_29 chr3:159370574-159370674 2.43e-01 100 chr18:3599191-3599291 3.03e-01 100 chr8:113092321-113092421 1.39e-01 100 chr4:79112323-79112423 2.50e-01 100 chr13:67832809-67832909 1.31e-01 100 chr9:18805321-18805421 3.69e-01 100 chr10:12999271-12999371 8.85e-01 100 chr1:177624881-177624981 1.33e-01 100 chr7:70931462-70931562 6.32e-01 100 chr11:8432488-8432588 9.21e-01 100 chr5:5071057-5071157 7.79e-01 100 chr15:65847616-65847716 5.47e-01 100 chr4:111536958-111537058 1.33e-04 10_[+2(9.21e-09)]_61 chr1:94427586-94427686 1.11e-01 100 chr2:172950290-172950390 4.38e-01 100 chr16:14168022-14168122 6.63e-01 100 chr1:98932847-98932947 3.39e-01 100 chr4:148846241-148846341 5.04e-01 100 chr4:95749030-95749130 5.44e-01 100 chr6:108646170-108646270 3.54e-01 100 chr6:32922834-32922934 8.38e-01 100 chr16:26249606-26249706 4.89e-01 100 chr9:9625973-9626073 5.79e-02 100 chr4:32207956-32208056 8.00e-01 100 chr1:216394598-216394698 8.70e-01 100 chr7:41872500-41872600 1.95e-02 33_[+1(7.29e-06)]_53 chr4:83588328-83588428 3.09e-02 100 chr17:76356932-76357032 4.94e-02 29_[-2(1.36e-05)]_42 chr2:79980066-79980166 8.86e-01 100 chr21:27111211-27111311 2.81e-01 100 chr14:87712267-87712367 2.00e-01 100 chr8:9087039-9087139 5.14e-01 100 chr14:58084369-58084469 1.43e-01 100 chr22:46774163-46774263 6.95e-04 35_[-1(3.28e-07)]_51 chr4:113906353-113906453 1.69e-04 40_[+1(5.08e-07)]_46 chr3:100632143-100632243 1.38e-02 35_[+1(1.32e-05)]_51 chr2:197583873-197583973 4.03e-01 100 chr13:105005468-10500556 4.26e-01 100 chr11:5342056-5342156 7.00e-01 100 chr15:29578622-29578722 1.99e-01 100 chr5:104009312-104009412 2.98e-01 100 chr5:75722240-75722340 3.24e-01 100 chr4:180538906-180539006 9.36e-01 100 chr3:19033667-19033767 1.91e-01 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5.93e-01 100 chr3:9005371-9005471 6.03e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: surya.stanford.edu ********************************************************************************