# DREME 4.12.0 # command: dreme -v 1 -oc chipseq_overlap/dreme_out -png -dna -p chipseq_overlap/seqs-centered -n chipseq_overlap/seqs-shuffled # positives: 33355 from chipseq_overlap/seqs-centered (Mon Oct 21 03:37:54 PDT 2019) # negatives: 33355 from chipseq_overlap/seqs-shuffled (Mon Oct 21 03:37:54 PDT 2019) # host: surya.stanford.edu # when: Mon Oct 21 03:51:19 PDT 2019 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.274 C 0.225 G 0.226 T 0.275 MOTIF ATGYANAT DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ATGYANAT ATNTRCAT 3508 1010 1.2e-341 5.4e-337 # ATGCAAAT ATTTGCAT 1299 233 1.7e-183 7.6e-179 # ATGTAAAT ATTTACAT 677 133 9.0e-090 4.1e-085 # ATGCAGAT ATCTGCAT 594 155 2.7e-062 1.3e-057 # ATGCATAT ATATGCAT 353 138 3.2e-023 1.5e-018 # ATGTAGAT ATCTACAT 247 98 2.4e-016 1.1e-011 # ATGCACAT ATGTGCAT 283 131 2.6e-014 1.2e-009 # ATGTATAT ATATACAT 202 104 1.0e-008 4.8e-004 # ATGTACAT ATGTACAT 83 46 7.1e-004 3.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 3805 E= 5.4e-337 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.677267 0.000000 0.322733 1.000000 0.000000 0.000000 0.000000 0.531932 0.097240 0.221288 0.149540 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF MATRACAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST MATRACAA TTGTYATK 2194 669 4.4e-196 2.0e-191 # CATAACAA TTGTTATG 696 130 1.3e-095 6.0e-091 # CATGACAA TTGTCATG 613 161 7.6e-064 3.5e-059 # AATAACAA TTGTTATT 533 192 1.2e-038 5.6e-034 # AATGACAA TTGTCATT 391 189 1.2e-017 5.7e-013 letter-probability matrix: alength= 4 w= 8 nsites= 2251 E= 2.0e-191 0.414482 0.585518 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.550866 0.000000 0.449134 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTGKGD DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CTGKGD HCMCAG 14272 11090 1.4e-142 6.2e-138 # CTGGGA TCCCAG 3522 2356 1.2e-057 5.5e-053 # CTGTGT ACACAG 2786 1900 1.6e-041 7.5e-037 # CTGTGG CCACAG 2857 2050 2.3e-033 1.0e-028 # CTGTGA TCACAG 2834 2084 5.2e-029 2.4e-024 # CTGGGT ACCCAG 2383 1834 1.3e-018 5.8e-014 # CTGGGG CCCCAG 3327 2794 4.7e-013 2.1e-008 letter-probability matrix: alength= 4 w= 6 nsites= 18680 E= 6.2e-138 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.526392 0.473608 0.000000 0.000000 1.000000 0.000000 0.358833 0.000000 0.352784 0.288383 MOTIF RGAAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST RGAAA TTTCY 19177 16166 4.8e-121 2.2e-116 # AGAAA TTTCT 13031 10751 3.6e-076 1.6e-071 # GGAAA TTTCC 10164 8227 1.5e-063 6.9e-059 letter-probability matrix: alength= 4 w= 5 nsites= 28986 E= 2.2e-116 0.583661 0.000000 0.416339 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TATGYWAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST TATGYWAA TTWRCATA 1148 412 1.8e-082 8.0e-078 # TATGCTAA TTAGCATA 369 89 4.1e-042 1.8e-037 # TATGCAAA TTTGCATA 392 136 2.8e-030 1.2e-025 # TATGTAAA TTTACATA 183 78 3.1e-011 1.4e-006 # TATGTTAA TTAACATA 223 111 4.0e-010 1.7e-005 letter-probability matrix: alength= 4 w= 8 nsites= 1176 E= 8.0e-078 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.653912 0.000000 0.346088 0.494898 0.000000 0.000000 0.505102 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TATTYW DREME-6 # Word RC Word Pos Neg P-value E-value # BEST TATTYW WRAATA 9027 6999 8.1e-076 3.5e-071 # TATTTA TAAATA 2640 1839 1.2e-035 5.3e-031 # TATTTT AAAATA 3354 2513 6.5e-031 2.9e-026 # TATTCA TGAATA 2385 1810 2.4e-020 1.1e-015 # TATTCT AGAATA 2194 1779 6.1e-012 2.7e-007 letter-probability matrix: alength= 4 w= 6 nsites= 11009 E= 3.5e-071 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.429558 0.000000 0.570442 0.470706 0.000000 0.000000 0.529294 MOTIF CDGSAG DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CDGSAG CTSCHG 10466 8434 1.4e-068 5.9e-064 # CAGCAG CTGCTG 3305 2395 8.8e-037 3.9e-032 # CTGGAG CTCCAG 3100 2466 3.6e-019 1.6e-014 # CTGCAG CTGCAG 1905 1412 8.3e-019 3.6e-014 # CGGGAG CTCCCG 977 676 3.4e-014 1.5e-009 # CAGGAG CTCCTG 2851 2419 3.0e-010 1.3e-005 # CGGCAG CTGCCG 838 647 3.0e-007 1.3e-002 letter-probability matrix: alength= 4 w= 6 nsites= 13259 E= 5.9e-064 0.000000 1.000000 0.000000 0.000000 0.472585 0.000000 0.141263 0.386153 0.000000 0.000000 1.000000 0.000000 0.000000 0.464138 0.535862 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF ATGCGCAT DREME-8 # Word RC Word Pos Neg P-value E-value # BEST ATGCGCAT ATGCGCAT 275 12 1.3e-066 5.6e-062 # ATGCGCAT ATGCGCAT 275 12 1.3e-066 5.6e-062 letter-probability matrix: alength= 4 w= 8 nsites= 276 E= 5.6e-062 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CBCCWCCC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CBCCWCCC GGGWGGVG 1493 764 5.1e-056 2.2e-051 # CCCCACCC GGGTGGGG 399 163 2.6e-024 1.1e-019 # CCCCTCCC GGGAGGGG 495 245 7.5e-021 3.2e-016 # CTCCTCCC GGGAGGAG 343 195 7.6e-011 3.3e-006 # CTCCACCC GGGTGGAG 188 105 6.8e-007 2.9e-002 # CGCCTCCC GGGAGGCG 91 56 2.4e-003 1.0e+002 # CGCCACCC GGGTGGCG 56 30 3.3e-003 1.4e+002 letter-probability matrix: alength= 4 w= 8 nsites= 1573 E= 2.2e-051 0.000000 1.000000 0.000000 0.000000 0.000000 0.568976 0.093452 0.337572 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.406230 0.000000 0.000000 0.593770 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RAATGY DREME-10 # Word RC Word Pos Neg P-value E-value # BEST RAATGY RCATTY 7565 6187 5.2e-040 2.2e-035 # AAATGT ACATTT 2543 1976 1.3e-018 5.4e-014 # GAATGT ACATTC 1986 1534 2.6e-015 1.1e-010 # AAATGC GCATTT 2241 1786 7.5e-014 3.2e-009 # GAATGC GCATTC 1642 1380 5.8e-007 2.5e-002 letter-probability matrix: alength= 4 w= 6 nsites= 8717 E= 2.2e-035 0.571068 0.000000 0.428932 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.459676 0.000000 0.540324 MOTIF ACARAGV DREME-11 # Word RC Word Pos Neg P-value E-value # BEST ACARAGV BCTYTGT 3950 2928 4.7e-039 2.0e-034 # ACAAAGG CCTTTGT 912 633 3.6e-013 1.6e-008 # ACAAAGA TCTTTGT 904 635 2.1e-012 9.1e-008 # ACAGAGA TCTCTGT 608 422 2.9e-009 1.2e-004 # ACAGAGG CCTCTGT 592 434 3.7e-007 1.6e-002 # ACAAAGC GCTTTGT 692 542 9.1e-006 3.9e-001 # ACAGAGC GCTCTGT 459 356 1.6e-004 6.8e+000 letter-probability matrix: alength= 4 w= 7 nsites= 4222 E= 2.0e-034 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.603032 0.000000 0.396968 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.361914 0.276172 0.361914 0.000000 MOTIF ACGTV DREME-12 # Word RC Word Pos Neg P-value E-value # BEST ACGTV BACGT 2227 1491 7.6e-036 3.3e-031 # ACGTG CACGT 1369 840 8.5e-031 3.6e-026 # ACGTA TACGT 736 547 5.5e-008 2.4e-003 # ACGTC GACGT 829 670 1.8e-005 7.7e-001 letter-probability matrix: alength= 4 w= 5 nsites= 2349 E= 3.3e-031 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.240954 0.267348 0.491699 0.000000 MOTIF ACACAYAC DREME-13 # Word RC Word Pos Neg P-value E-value # BEST ACACAYAC GTRTGTGT 488 195 1.8e-030 7.7e-026 # ACACACAC GTGTGTGT 364 122 1.7e-029 7.1e-025 # ACACATAC GTATGTGT 156 83 1.3e-006 5.4e-002 letter-probability matrix: alength= 4 w= 8 nsites= 790 E= 7.7e-026 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.808861 0.000000 0.191139 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGRKGGCG DREME-14 # Word RC Word Pos Neg P-value E-value # BEST AGRKGGCG CGCCMYCT 472 187 6.6e-030 2.8e-025 # AGGGGGCG CGCCCCCT 184 65 1.1e-014 4.5e-010 # AGAGGGCG CGCCCTCT 130 58 7.7e-008 3.2e-003 # AGATGGCG CGCCATCT 77 28 9.1e-007 3.8e-002 # AGGTGGCG CGCCACCT 84 37 1.1e-005 4.8e-001 letter-probability matrix: alength= 4 w= 8 nsites= 476 E= 2.8e-025 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.434874 0.000000 0.565126 0.000000 0.000000 0.000000 0.661765 0.338235 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CYTCCY DREME-15 # Word RC Word Pos Neg P-value E-value # BEST CYTCCY RGGARG 8123 6967 5.5e-027 2.3e-022 # CCTCCC GGGAGG 2026 1564 1.2e-015 5.0e-011 # CTTCCC GGGAAG 2447 1989 5.9e-013 2.5e-008 # CTTCCT AGGAAG 3041 2544 2.0e-012 8.3e-008 # CCTCCT AGGAGG 1945 1781 3.0e-003 1.3e+002 letter-probability matrix: alength= 4 w= 6 nsites= 9615 E= 2.3e-022 0.000000 1.000000 0.000000 0.000000 0.000000 0.420593 0.000000 0.579407 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.473115 0.000000 0.526885 MOTIF TACAGGYR DREME-16 # Word RC Word Pos Neg P-value E-value # BEST TACAGGYR YRCCTGTA 473 206 1.3e-025 5.3e-021 # TACAGGTG CACCTGTA 153 55 3.3e-012 1.4e-007 # TACAGGCA TGCCTGTA 185 93 1.7e-008 7.1e-004 # TACAGGCG CGCCTGTA 59 18 1.5e-006 6.3e-002 # TACAGGTA TACCTGTA 79 40 2.2e-004 9.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 475 E= 5.3e-021 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.513684 0.000000 0.486316 0.555789 0.000000 0.444211 0.000000 MOTIF ATGNTAAT DREME-17 # Word RC Word Pos Neg P-value E-value # BEST ATGNTAAT ATTANCAT 727 399 2.1e-023 8.8e-019 # ATGCTAAT ATTAGCAT 182 78 4.4e-011 1.8e-006 # ATGTTAAT ATTAACAT 182 96 1.3e-007 5.5e-003 # ATGATAAT ATTATCAT 218 124 2.0e-007 8.1e-003 # ATGGTAAT ATTACCAT 158 101 2.3e-004 9.7e+000 letter-probability matrix: alength= 4 w= 8 nsites= 739 E= 8.8e-019 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.294993 0.244926 0.215156 0.244926 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CAGWG DREME-18 # Word RC Word Pos Neg P-value E-value # BEST CAGWG CWCTG 11826 10708 3.0e-020 1.2e-015 # CAGAG CTCTG 6668 5983 7.1e-012 2.9e-007 # CAGTG CACTG 6406 5753 3.1e-011 1.3e-006 letter-probability matrix: alength= 4 w= 5 nsites= 14648 E= 1.2e-015 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.514200 0.000000 0.000000 0.485800 0.000000 0.000000 1.000000 0.000000 MOTIF CCRCCDCC DREME-19 # Word RC Word Pos Neg P-value E-value # BEST CCRCCDCC GGHGGYGG 520 265 1.8e-020 7.3e-016 # CCACCACC GGTGGTGG 197 90 1.1e-010 4.6e-006 # CCGCCGCC GGCGGCGG 132 70 7.4e-006 3.0e-001 # CCACCGCC GGCGGTGG 71 28 9.0e-006 3.7e-001 # CCGCCACC GGTGGCGG 37 13 4.7e-004 1.9e+001 # CCACCTCC GGAGGTGG 70 36 6.1e-004 2.5e+001 # CCGCCTCC GGAGGCGG 60 34 4.7e-003 1.9e+002 letter-probability matrix: alength= 4 w= 8 nsites= 542 E= 7.3e-016 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.588561 0.000000 0.411439 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.407749 0.000000 0.361624 0.230627 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAAAMAAA DREME-20 # Word RC Word Pos Neg P-value E-value # BEST AAAAMAAA TTTKTTTT 1175 787 2.9e-019 1.2e-014 # AAAACAAA TTTGTTTT 497 271 9.8e-017 4.0e-012 # AAAAAAAA TTTTTTTT 736 531 3.3e-009 1.4e-004 letter-probability matrix: alength= 4 w= 8 nsites= 1377 E= 1.2e-014 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.625272 0.374728 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCCGCCBC DREME-21 # Word RC Word Pos Neg P-value E-value # BEST CCCGCCBC GVGGCGGG 288 120 2.0e-017 8.1e-013 # CCCGCCCC GGGGCGGG 183 63 4.2e-015 1.7e-010 # CCCGCCGC GCGGCGGG 59 30 1.4e-003 5.6e+001 # CCCGCCTC GAGGCGGG 55 29 3.0e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 299 E= 8.1e-013 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.618729 0.197324 0.183946 0.000000 1.000000 0.000000 0.000000 MOTIF CAGCCTGG DREME-22 # Word RC Word Pos Neg P-value E-value # BEST CAGCCTGG CCAGGCTG 253 109 1.1e-014 4.5e-010 # CAGCCTGG CCAGGCTG 253 109 1.1e-014 4.5e-010 letter-probability matrix: alength= 4 w= 8 nsites= 255 E= 4.5e-010 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CRGMCAC DREME-23 # Word RC Word Pos Neg P-value E-value # BEST CRGMCAC GTGKCYG 904 615 3.3e-014 1.3e-009 # CAGCCAC GTGGCTG 416 299 6.2e-006 2.5e-001 # CGGCCAC GTGGCCG 133 72 1.2e-005 4.8e-001 # CAGACAC GTGTCTG 296 216 2.2e-004 9.1e+000 # CGGACAC GTGTCCG 64 35 2.3e-003 9.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 914 E= 1.3e-009 0.000000 1.000000 0.000000 0.000000 0.782276 0.000000 0.217724 0.000000 0.000000 0.000000 1.000000 0.000000 0.396061 0.603939 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CDGGAA DREME-24 # Word RC Word Pos Neg P-value E-value # BEST CDGGAA TTCCHG 2765 2275 3.8e-013 1.5e-008 # CAGGAA TTCCTG 1088 835 2.6e-009 1.1e-004 # CTGGAA TTCCAG 1518 1324 1.1e-004 4.4e+000 # CGGGAA TTCCCG 242 179 1.2e-003 4.9e+001 letter-probability matrix: alength= 4 w= 6 nsites= 2905 E= 1.5e-008 0.000000 1.000000 0.000000 0.000000 0.380723 0.000000 0.084337 0.534940 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TTTAHAAA DREME-25 # Word RC Word Pos Neg P-value E-value # BEST TTTAHAAA TTTDTAAA 710 468 5.9e-013 2.4e-008 # TTTAAAAA TTTTTAAA 440 292 2.1e-008 8.6e-004 # TTTATAAA TTTATAAA 100 55 1.8e-004 7.5e+000 # TTTACAAA TTTGTAAA 173 124 2.6e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 719 E= 2.4e-008 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.620306 0.240612 0.000000 0.139082 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ATAATAA DREME-26 # Word RC Word Pos Neg P-value E-value # BEST ATAATAA TTATTAT 595 383 4.5e-012 1.8e-007 # ATAATAA TTATTAT 595 383 4.5e-012 1.8e-007 letter-probability matrix: alength= 4 w= 7 nsites= 613 E= 1.8e-007 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CATTSTC DREME-27 # Word RC Word Pos Neg P-value E-value # BEST CATTSTC GASAATG 823 581 3.6e-011 1.5e-006 # CATTGTC GACAATG 476 337 5.3e-007 2.1e-002 # CATTCTC GAGAATG 351 246 9.1e-006 3.7e-001 letter-probability matrix: alength= 4 w= 7 nsites= 834 E= 1.5e-006 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.424460 0.575540 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GCATYACA DREME-28 # Word RC Word Pos Neg P-value E-value # BEST GCATYACA TGTRATGC 265 137 7.4e-011 3.0e-006 # GCATCACA TGTGATGC 132 63 4.2e-007 1.7e-002 # GCATTACA TGTAATGC 134 74 1.9e-005 7.5e-001 letter-probability matrix: alength= 4 w= 8 nsites= 268 E= 3.0e-006 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.496269 0.000000 0.503731 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCACCABG DREME-29 # Word RC Word Pos Neg P-value E-value # BEST CCACCABG CVTGGTGG 408 248 1.8e-010 7.4e-006 # CCACCAGG CCTGGTGG 195 115 3.1e-006 1.2e-001 # CCACCACG CGTGGTGG 44 17 3.6e-004 1.5e+001 # CCACCATG CATGGTGG 171 117 8.5e-004 3.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 412 E= 7.4e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.106796 0.475728 0.417476 0.000000 0.000000 1.000000 0.000000 MOTIF CTGDCTTC DREME-30 # Word RC Word Pos Neg P-value E-value # BEST CTGDCTTC GAAGHCAG 385 234 5.8e-010 2.3e-005 # CTGTCTTC GAAGACAG 129 69 1.2e-005 4.7e-001 # CTGGCTTC GAAGCCAG 146 92 2.8e-004 1.1e+001 # CTGACTTC GAAGTCAG 113 73 2.0e-003 8.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 388 E= 2.3e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.291237 0.000000 0.376289 0.332474 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GAGAGAGA DREME-31 # Word RC Word Pos Neg P-value E-value # BEST GAGAGAGA TCTCTCTC 314 181 1.0e-009 4.2e-005 # GAGAGAGA TCTCTCTC 314 181 1.0e-009 4.2e-005 letter-probability matrix: alength= 4 w= 8 nsites= 394 E= 4.2e-005 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAATAY DREME-32 # Word RC Word Pos Neg P-value E-value # BEST AAATAY RTATTT 1399 1110 2.2e-009 9.0e-005 # AAATAC GTATTT 637 486 3.1e-006 1.2e-001 # AAATAT ATATTT 780 633 4.3e-005 1.7e+000 letter-probability matrix: alength= 4 w= 6 nsites= 1451 E= 9.0e-005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.446589 0.000000 0.553411 MOTIF ATAAAWG DREME-33 # Word RC Word Pos Neg P-value E-value # BEST ATAAAWG CWTTTAT 1030 789 5.5e-009 2.2e-004 # ATAAAAG CTTTTAT 682 524 2.5e-006 9.9e-002 # ATAAATG CATTTAT 354 268 3.0e-004 1.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 1047 E= 2.2e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.659981 0.000000 0.000000 0.340019 0.000000 0.000000 1.000000 0.000000 MOTIF ACASCTGG DREME-34 # Word RC Word Pos Neg P-value E-value # BEST ACASCTGG CCAGSTGT 236 130 1.5e-008 6.1e-004 # ACACCTGG CCAGGTGT 126 59 4.5e-007 1.8e-002 # ACAGCTGG CCAGCTGT 110 71 2.3e-003 9.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 236 E= 6.1e-004 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.533898 0.466102 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GTCTCYAC DREME-35 # Word RC Word Pos Neg P-value E-value # BEST GTCTCYAC GTRGAGAC 168 84 6.3e-008 2.5e-003 # GTCTCTAC GTAGAGAC 97 44 4.6e-006 1.9e-001 # GTCTCCAC GTGGAGAC 71 40 2.1e-003 8.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 169 E= 2.5e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.420118 0.000000 0.579882 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGCCACCG DREME-36 # Word RC Word Pos Neg P-value E-value # BEST AGCCACCG CGGTGGCT 62 16 7.4e-008 3.0e-003 # AGCCACCG CGGTGGCT 62 16 7.4e-008 3.0e-003 letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 3.0e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CAACATRG DREME-37 # Word RC Word Pos Neg P-value E-value # BEST CAACATRG CYATGTTG 318 202 1.9e-007 7.5e-003 # CAACATAG CTATGTTG 129 77 1.7e-004 7.0e+000 # CAACATGG CCATGTTG 189 125 1.8e-004 7.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 319 E= 7.5e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.404389 0.000000 0.595611 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CTGGSCTC DREME-38 # Word RC Word Pos Neg P-value E-value # BEST CTGGSCTC GAGSCCAG 293 185 4.1e-007 1.6e-002 # CTGGCCTC GAGGCCAG 149 89 5.9e-005 2.4e+000 # CTGGGCTC GAGCCCAG 145 97 1.2e-003 4.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 295 E= 1.6e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.508475 0.491525 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACCWCGG DREME-39 # Word RC Word Pos Neg P-value E-value # BEST ACCWCGG CCGWGGT 229 138 1.1e-006 4.4e-002 # ACCTCGG CCGAGGT 136 85 3.6e-004 1.4e+001 # ACCACGG CCGTGGT 93 53 5.8e-004 2.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 229 E= 4.4e-002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.406114 0.000000 0.000000 0.593886 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 5580.82 seconds