Invoking:
  getsize memechip_out/chipseq.idr.optimal_peak.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.042771
Invoking:
  fasta-most -min 50 < memechip_out/chipseq.idr.optimal_peak.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.087827
Invoking:
  fasta-center -dna -len 100 < memechip_out/chipseq.idr.optimal_peak.fa 1> memechip_out/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.113832
Invoking:
  fasta-shuffle-letters memechip_out/seqs-centered memechip_out/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.042323
Invoking:
  fasta-subsample memechip_out/seqs-centered 600 -rest memechip_out/seqs-discarded -seed 1 1> memechip_out/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.097202
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 memechip_out/chipseq.idr.optimal_peak.fa memechip_out/background
Finished invoke:
  name: bg  status: 0  time: 0.016677
Invoking:
  meme memechip_out/seqs-sampled -oc memechip_out/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile memechip_out/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 735.172295
Invoking:
  dreme -v 1 -oc memechip_out/dreme_out -png -dna -p memechip_out/seqs-centered -n memechip_out/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 648.966033
Invoking:
  centrimo -seqlen 210 -verbosity 1 -oc memechip_out/centrimo_out -bfile memechip_out/background memechip_out/chipseq.idr.optimal_peak.fa memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.943243
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 memechip_out/combined.meme memechip_out/combined.meme 1> memechip_out/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.411224
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_1 -bgfile memechip_out/background -primary CWTTSTYATGCAAAT memechip_out/chipseq.idr.optimal_peak.fa memechip_out/meme_out/meme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.45561
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_2 -bgfile memechip_out/background -primary ATGCGCAT memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.249764
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_3 -bgfile memechip_out/background -primary ACAAWGG memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.32855
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_4 -bgfile memechip_out/background -primary CCWCCY memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.275722
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_5 -bgfile memechip_out/background -primary AAAGRVA memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.266248
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_6 -bgfile memechip_out/background -primary SVSGGGGSGGGGSVGKGSVGGGGVVSSRG memechip_out/chipseq.idr.optimal_peak.fa memechip_out/meme_out/meme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.476912
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_7 -bgfile memechip_out/background -primary CAGCRGG memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.231059
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_8 -bgfile memechip_out/background -primary ATATGWAT memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.247685
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_9 -bgfile memechip_out/background -primary CMCAGS memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.2506
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_10 -bgfile memechip_out/background -primary RGAGA memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.248187
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_11 -bgfile memechip_out/background -primary GTAWTTM memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.207346
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_12 -bgfile memechip_out/background -primary RCATTCCW memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.226799
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_13 -bgfile memechip_out/background -primary CACSTGS memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.217625
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_14 -bgfile memechip_out/background -primary GGTTCGA memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.268286
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_15 -bgfile memechip_out/background -primary GAGTCAC memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.251225
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_16 -bgfile memechip_out/background -primary CCACWGWG memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.214655
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_17 -bgfile memechip_out/background -primary KCCAGGTA memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo17  status: 0  time: 0.216589
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_18 -bgfile memechip_out/background -primary CTAAYGAG memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo18  status: 0  time: 0.253222
Invoking:
  spamo -verbosity 1 -oc memechip_out/spamo_out_19 -bgfile memechip_out/background -primary GCTCTGSA memechip_out/chipseq.idr.optimal_peak.fa memechip_out/dreme_out/dreme.xml memechip_out/meme_out/meme.xml memechip_out/dreme_out/dreme.xml
Finished invoke:
  name: spamo19  status: 0  time: 0.299371
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_1 --bgfile memechip_out/background --motif CWTTSTYATGCAAAT memechip_out/meme_out/meme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.571219
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_2 --bgfile memechip_out/background --motif ATGCGCAT memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.541017
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_3 --bgfile memechip_out/background --motif ACAAWGG memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.529634
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_4 --bgfile memechip_out/background --motif CCWCCY memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.408947
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_5 --bgfile memechip_out/background --motif AAAGRVA memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.391289
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_6 --bgfile memechip_out/background --motif SVSGGGGSGGGGSVGKGSVGGGGVVSSRG memechip_out/meme_out/meme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.662593
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_7 --bgfile memechip_out/background --motif CAGCRGG memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.59251
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_8 --bgfile memechip_out/background --motif ATATGWAT memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.551546
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_9 --bgfile memechip_out/background --motif CMCAGS memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.474736
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_10 --bgfile memechip_out/background --motif RGAGA memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.434084
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_11 --bgfile memechip_out/background --motif GTAWTTM memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.456518
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_12 --bgfile memechip_out/background --motif RCATTCCW memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.447667
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_13 --bgfile memechip_out/background --motif CACSTGS memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.534992
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_14 --bgfile memechip_out/background --motif GGTTCGA memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.534686
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_15 --bgfile memechip_out/background --motif GAGTCAC memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.462942
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_16 --bgfile memechip_out/background --motif CCACWGWG memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo16  status: 0  time: 0.466185
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_17 --bgfile memechip_out/background --motif KCCAGGTA memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo17  status: 0  time: 0.3858
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_18 --bgfile memechip_out/background --motif CTAAYGAG memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo18  status: 0  time: 0.480551
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc memechip_out/fimo_out_19 --bgfile memechip_out/background --motif GCTCTGSA memechip_out/dreme_out/dreme.xml memechip_out/chipseq.idr.optimal_peak.fa
Finished invoke:
  name: fimo19  status: 0  time: 0.505576
Writing output
Invoking:
  meme-chip_html_to_tsv memechip_out/meme-chip.html memechip_out/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.145407
Done